Started by upstream project "BIOFORMATS-test-repo" build number 365
originally caused by:
Started by upstream project "Trigger" build number 391
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins11568804318882081418.sh
+ '[' apng = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58255_merge_ci -v /uod/idr/repos/curated/apng:/data -v /uod/idr-scratch/merge-ci/curated/apng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:18:32,752 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 04:18:32,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
[testng] 04:18:32,753 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:18:32,754 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:18:32,755 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:18:32,755 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:18:32,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:18:32,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:18:32,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:18:32,756 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:18:32,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:18:32,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:18:32,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:18:32,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:18:32,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:18:32,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:18:32,941 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:18:32,941 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:18:32,941 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:18:32,942 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:18:32,942 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
[testng] 04:18:32,942 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
[testng] 04:18:32,943 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 187 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-05 04:18:32,951] [main] java.version = 17.0.2
[testng] 04:18:32,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:18:32,954 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:32,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-05_04-18-32.log]
[testng] 04:18:32,996 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
[testng] [2025-03-05 04:18:32,998] [main] testng.directory = /data
[testng] [2025-03-05 04:18:32,998] [main] testng.configDirectory = /config
[testng] [2025-03-05 04:18:33,006] [main] testng.multiplier = 1.0
[testng] [2025-03-05 04:18:33,007] [main] testng.in-memory = false
[testng] [2025-03-05 04:18:33,007] [main] testng.allow-missing = false
[testng] [2025-03-05 04:18:33,008] [main] user.language = en
[testng] [2025-03-05 04:18:33,008] [main] user.country = ${user.country}
[testng] [2025-03-05 04:18:33,008] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-05 04:18:33,519] [main] ----------------------------------------
[testng] [2025-03-05 04:18:33,519] [main] Total files: 21
[testng] [2025-03-05 04:18:33,519] [main] Scan time: 0.511 s (24 ms/file)
[testng] [2025-03-05 04:18:33,520] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 21 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-05 04:18:36,895] [pool-1-thread-1] Initializing /data/samples/orbit.png:
[testng] 04:18:36,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:18:36,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:36,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-05_04-18-36.log]
[testng] 04:18:36,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47556b5 - End of configuration.
[testng] [2025-03-05 04:18:36,992] [pool-1-thread-12] Initializing /data/samples/daniel_coltri_two.png:
[testng] 04:18:36,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:18:36,993 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:36,994 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-05_04-18-36.log]
[testng] 04:18:36,994 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fa4364f - End of configuration.
[testng] [2025-03-05 04:18:37,036] [pool-1-thread-11] Initializing /data/qa-7473/x.png:
[testng] 04:18:37,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:18:37,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:37,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-05_04-18-37.log]
[testng] 04:18:37,037 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2df68f02 - End of configuration.
[testng] [2025-03-05 04:18:37,083] [pool-1-thread-10] Initializing /data/samples/MoonPhases.png:
[testng] 04:18:37,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:18:37,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:37,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-05_04-18-37.log]
[testng] 04:18:37,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@dda4ba6 - End of configuration.
[testng] [2025-03-05 04:18:37,130] [pool-1-thread-9] Initializing /data/samples/william_wong01.png:
[testng] 04:18:37,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:18:37,130 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:37,130 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-05_04-18-37.log]
[testng] 04:18:37,131 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45b883bb - End of configuration.
[testng] [2025-03-05 04:18:37,187] [pool-1-thread-8] Initializing /data/samples/joanna_viera01.png:
[testng] 04:18:37,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:18:37,188 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:37,189 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-05_04-18-37.log]
[testng] 04:18:37,189 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2713223a - End of configuration.
[testng] [2025-03-05 04:18:37,228] [pool-1-thread-7] Initializing /data/samples/william_wong05.png:
[testng] 04:18:37,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:18:37,229 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:37,230 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-05_04-18-37.log]
[testng] 04:18:37,230 |-INFO in ch.qos.logback.core.sift.SiftProcessor@121d158c - End of configuration.
[testng] [2025-03-05 04:18:37,285] [pool-1-thread-6] Initializing /data/samples/atom.png:
[testng] 04:18:37,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:18:37,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:37,286 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-05_04-18-37.log]
[testng] 04:18:37,286 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a9ab1b - End of configuration.
[testng] [2025-03-05 04:18:37,329] [pool-1-thread-5] Initializing /data/samples/spinfox.png:
[testng] 04:18:37,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:18:37,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:37,330 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-05_04-18-37.log]
[testng] 04:18:37,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@708b0f6f - End of configuration.
[testng] [2025-03-05 04:18:37,388] [pool-1-thread-4] Initializing /data/samples/chompy2.png:
[testng] 04:18:37,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:18:37,388 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:37,389 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-05_04-18-37.log]
[testng] 04:18:37,389 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7bb7b5ce - End of configuration.
[testng] [2025-03-05 04:18:37,448] [pool-1-thread-3] Initializing /data/qa-7473/n.tif:
[testng] 04:18:37,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:18:37,448 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:37,449 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-05_04-18-37.log]
[testng] 04:18:37,449 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41d33b33 - End of configuration.
[testng] [2025-03-05 04:18:39,045] [pool-1-thread-2] Initializing /data/samples/daniel_coltri_one.png:
[testng] 04:18:39,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:18:39,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:18:39,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-05_04-18-39.log]
[testng] 04:18:39,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d5b29e1 - End of configuration.
[testng] [2025-03-05 04:18:41,328] [pool-1-thread-11] Initializing /data/samples/StarV838.png:
[testng] [2025-03-05 04:18:41,379] [pool-1-thread-7] Initializing /data/colin/test.sfstdge.png:
[testng] [2025-03-05 04:18:41,422] [pool-1-thread-8] Initializing /data/samples/PhugAnimation3.png:
[testng] [2025-03-05 04:18:41,479] [pool-1-thread-12] Initializing /data/samples/phug_logo.png:
[testng] [2025-03-05 04:18:41,787] [pool-1-thread-10] Initializing /data/samples/monkey_apng.png:
[testng] [2025-03-05 04:18:41,841] [pool-1-thread-6] Initializing /data/samples/william_wong04.png:
[testng] [2025-03-05 04:18:41,893] [pool-1-thread-2] Initializing /data/samples/Sun.png:
[testng] [2025-03-05 04:18:41,939] [pool-1-thread-1] Initializing /data/samples/Matrix.png:
[testng] [2025-03-05 04:18:42,011] [pool-1-thread-9] Initializing /data/samples/william_wong02.png:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1113, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 19 seconds
Finished: SUCCESS