Started by upstream project "BIOFORMATS-test-repo" build number 365
originally caused by:
Started by upstream project "Trigger" build number 391
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins7800119956020668188.sh
+ '[' biorad-gel = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58262_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 05:01:51,868 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 05:01:51,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
[testng] 05:01:51,869 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:01:51,870 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:01:51,870 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:01:51,871 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:01:51,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:01:51,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:01:51,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:01:51,872 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:01:51,872 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:01:51,872 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:01:52,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:01:52,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:01:52,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:01:52,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:01:52,047 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:01:52,047 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:01:52,048 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:01:52,048 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:01:52,048 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
[testng] 05:01:52,049 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
[testng] 05:01:52,049 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 178 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-05 05:01:52,057] [main] java.version = 17.0.2
[testng] 05:01:52,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:01:52,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:01:52,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-05_05-01-52.log]
[testng] 05:01:52,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
[testng] [2025-03-05 05:01:52,100] [main] testng.directory = /data
[testng] [2025-03-05 05:01:52,101] [main] testng.configDirectory = /config
[testng] [2025-03-05 05:01:52,109] [main] testng.multiplier = 1.0
[testng] [2025-03-05 05:01:52,110] [main] testng.in-memory = false
[testng] [2025-03-05 05:01:52,110] [main] testng.allow-missing = false
[testng] [2025-03-05 05:01:52,110] [main] user.language = en
[testng] [2025-03-05 05:01:52,110] [main] user.country = ${user.country}
[testng] [2025-03-05 05:01:52,110] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-05 05:01:56,174] [main] ----------------------------------------
[testng] [2025-03-05 05:01:56,174] [main] Total files: 32
[testng] [2025-03-05 05:01:56,175] [main] Scan time: 4.064 s (127 ms/file)
[testng] [2025-03-05 05:01:56,175] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 32 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-05 05:02:28,620] [pool-1-thread-1] Initializing /data/sylvain/2009-10-26 14hr 57min:
[testng] 05:02:28,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:02:28,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:28,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-05_05-02-28.log]
[testng] 05:02:28,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b8f3c6c - End of configuration.
[testng] [2025-03-05 05:02:29,252] [pool-1-thread-12] Initializing /data/sylvain/2009-10-23 12hr 19min:
[testng] 05:02:29,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:02:29,252 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:29,253 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-05_05-02-29.log]
[testng] 05:02:29,253 |-INFO in ch.qos.logback.core.sift.SiftProcessor@374d43a9 - End of configuration.
[testng] [2025-03-05 05:02:29,917] [pool-1-thread-11] Initializing /data/keith/PF020426MRSA v2.1sc:
[testng] 05:02:29,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:02:29,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:29,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-05_05-02-29.log]
[testng] 05:02:29,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f6c9d07 - End of configuration.
[testng] [2025-03-05 05:02:30,546] [pool-1-thread-10] Initializing /data/geert/bad example1.jpg:
[testng] 05:02:30,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:02:30,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:30,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-05_05-02-30.log]
[testng] 05:02:30,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@334b391d - End of configuration.
[testng] [2025-03-05 05:02:30,749] [pool-1-thread-9] Initializing /data/david/Original Biorad Gel format file.1sc:
[testng] 05:02:30,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:02:30,749 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:30,750 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-05_05-02-30.log]
[testng] 05:02:30,751 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1dc48a5 - End of configuration.
[testng] [2025-03-05 05:02:31,304] [pool-1-thread-8] Initializing /data/david/Converted in Quantity One (Biorad).tiff:
[testng] 05:02:31,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:02:31,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:31,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-05_05-02-31.log]
[testng] 05:02:31,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ca02fd7 - End of configuration.
[testng] [2025-03-05 05:02:33,301] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 57min.tif:
[testng] 05:02:33,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:02:33,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:33,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-05_05-02-33.log]
[testng] 05:02:33,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5035f461 - End of configuration.
[testng] [2025-03-05 05:02:35,424] [pool-1-thread-6] Initializing /data/geert/bad example1.1sc:
[testng] 05:02:35,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:02:35,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:35,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-05_05-02-35.log]
[testng] 05:02:35,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7e1080e5 - End of configuration.
[testng] [2025-03-05 05:02:36,012] [pool-1-thread-5] Initializing /data/samples/imagesEight.1sc:
[testng] 05:02:36,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:02:36,012 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:36,013 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-05_05-02-36.log]
[testng] 05:02:36,013 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40302b1 - End of configuration.
[testng] [2025-03-05 05:02:36,626] [pool-1-thread-4] Initializing /data/keith/pg020410saur3.1sc:
[testng] 05:02:36,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:02:36,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:36,627 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-05_05-02-36.log]
[testng] 05:02:36,627 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e34d543 - End of configuration.
[testng] [2025-03-05 05:02:37,263] [pool-1-thread-3] Initializing /data/keith/PF020328saur v3.1sc:
[testng] 05:02:37,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:02:37,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:37,264 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-05_05-02-37.log]
[testng] 05:02:37,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@505034f0 - End of configuration.
[testng] [2025-03-05 05:02:37,871] [pool-1-thread-2] Initializing /data/keith/test.1sc:
[testng] 05:02:37,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:02:37,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:02:37,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-05_05-02-37.log]
[testng] 05:02:37,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60bac8d9 - End of configuration.
[testng] [2025-03-05 05:02:44,668] [pool-1-thread-4] Initializing /data/geert/bad example1.1sc.jpg:
[testng] [2025-03-05 05:02:44,888] [pool-1-thread-5] Initializing /data/sylvain/2009-10-23 12hr 18min.tif:
[testng] [2025-03-05 05:02:47,131] [pool-1-thread-3] Initializing /data/sylvain/2009-10-26 14hr 56min:
[testng] [2025-03-05 05:02:47,778] [pool-1-thread-11] Initializing /data/geert/good example1.1sc:
[testng] [2025-03-05 05:02:48,573] [pool-1-thread-2] Initializing /data/adrian/test_img.1sc:
[testng] [2025-03-05 05:02:49,165] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 56min.tif:
[testng] [2025-03-05 05:02:51,410] [pool-1-thread-10] Initializing /data/qa-29469/good.1sc:
[testng] [2025-03-05 05:02:51,988] [pool-1-thread-6] Initializing /data/keith/test2.1sc:
[testng] [2025-03-05 05:02:52,607] [pool-1-thread-1] Initializing /data/geert/good example1.1sc.jpg:
[testng] [2025-03-05 05:02:52,833] [pool-1-thread-12] Initializing /data/david/Opened in imageJ.tiff:
[testng] [2025-03-05 05:03:00,405] [pool-1-thread-6] Initializing /data/qa-29469/bad3.1sc:
[testng] [2025-03-05 05:03:01,145] [pool-1-thread-2] Initializing /data/qa-29469/bad2.1sc:
[testng] [2025-03-05 05:03:01,834] [pool-1-thread-11] Initializing /data/sylvain/2009-10-26 14hr 59min:
[testng] [2025-03-05 05:03:02,458] [pool-1-thread-10] Initializing /data/samples/Criterion.1sc:
[testng] [2025-03-05 05:03:03,047] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 19min.tif:
[testng] [2025-03-05 05:03:05,072] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 18min:
[testng] [2025-03-05 05:03:05,810] [pool-1-thread-4] Initializing /data/qa-29459/bad.jpg:
[testng] [2025-03-05 05:03:05,976] [pool-1-thread-8] Initializing /data/qa-29459/bad.1sc:
[testng] [2025-03-05 05:03:06,793] [pool-1-thread-7] Initializing /data/qa-16880/c-src v7.1sc:
[testng] [2025-03-05 05:03:11,000] [pool-1-thread-6] Initializing /data/sylvain/2009-10-26 14hr 59min.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1696, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 37 seconds
Finished: SUCCESS