Started by upstream project "BIOFORMATS-test-repo" build number 366
originally caused by:
Started by upstream project "Trigger" build number 392
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins7358997544954647210.sh
+ '[' specs = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58320_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:31:50,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 00:31:50,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service.
[testng] 00:31:50,422 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:31:50,423 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:31:50,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:31:50,423 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:31:50,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:31:50,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:31:50,424 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:31:50,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:31:50,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:31:50,425 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:31:50,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:31:50,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:31:50,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:31:50,606 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:31:50,615 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:31:50,615 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:31:50,615 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:31:50,616 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:31:50,616 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration.
[testng] 00:31:50,616 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point
[testng] 00:31:50,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 193 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-06 00:31:50,626] [main] java.version = 21
[testng] 00:31:50,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:31:50,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:31:50,673 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-06_00-31-50.log]
[testng] 00:31:50,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration.
[testng] [2025-03-06 00:31:50,677] [main] testng.directory = /data
[testng] [2025-03-06 00:31:50,677] [main] testng.configDirectory = /config
[testng] [2025-03-06 00:31:50,689] [main] testng.multiplier = 1.0
[testng] [2025-03-06 00:31:50,690] [main] testng.in-memory = false
[testng] [2025-03-06 00:31:50,690] [main] testng.allow-missing = false
[testng] [2025-03-06 00:31:50,690] [main] user.language = en
[testng] [2025-03-06 00:31:50,690] [main] user.country = ${user.country}
[testng] [2025-03-06 00:31:50,690] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-06 00:36:15,624] [main] ----------------------------------------
[testng] [2025-03-06 00:36:15,624] [main] Total files: 226
[testng] [2025-03-06 00:36:15,624] [main] Scan time: 264.934 s (1172 ms/file)
[testng] [2025-03-06 00:36:15,625] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 28 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-06 00:38:56,031] [pool-1-thread-1] Initializing /data/iplab/Blend_Final.IPL:
[testng] 00:38:56,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:38:56,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:56,033 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-06_00-38-56.log]
[testng] 00:38:56,033 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5243ada0 - End of configuration.
[testng] [2025-03-06 00:38:56,159] [pool-1-thread-12] Initializing /data/iplab/Color Image.IPL:
[testng] 00:38:56,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:38:56,160 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:56,160 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-06_00-38-56.log]
[testng] 00:38:56,161 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4944ac4d - End of configuration.
[testng] [2025-03-06 00:38:56,261] [pool-1-thread-11] Initializing /data/iplab/Blend_DIC.IPL:
[testng] 00:38:56,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:38:56,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:56,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-06_00-38-56.log]
[testng] 00:38:56,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@68dfff08 - End of configuration.
[testng] [2025-03-06 00:38:56,373] [pool-1-thread-10] Initializing /data/iplab/Actin.IPL:
[testng] 00:38:56,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:38:56,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:56,374 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-06_00-38-56.log]
[testng] 00:38:56,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38de452b - End of configuration.
[testng] [2025-03-06 00:38:56,486] [pool-1-thread-9] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm:
[testng] 00:38:56,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:38:56,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:56,487 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-06_00-38-56.log]
[testng] 00:38:56,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@189bf79d - End of configuration.
[testng] [2025-03-06 00:38:57,178] [pool-1-thread-8] Initializing /data/iplab/Blend_Dapi.IPL:
[testng] 00:38:57,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:38:57,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:57,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-06_00-38-57.log]
[testng] 00:38:57,180 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79714da3 - End of configuration.
[testng] [2025-03-06 00:38:57,294] [pool-1-thread-7] Initializing /data/fluoview/sample_labled_XYZTCh.tif:
[testng] 00:38:57,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:38:57,295 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:57,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-06_00-38-57.log]
[testng] 00:38:57,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7b8d9f03 - End of configuration.
[testng] [2025-03-06 00:38:58,024] [pool-1-thread-6] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3:
[testng] 00:38:58,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:38:58,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:58,025 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-06_00-38-58.log]
[testng] 00:38:58,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@409059a8 - End of configuration.
[testng] [2025-03-06 00:38:58,207] [pool-1-thread-5] Initializing /data/fluoview/SpineAnimation.tif:
[testng] 00:38:58,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:38:58,207 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:58,208 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-06_00-38-58.log]
[testng] 00:38:58,208 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32f860d - End of configuration.
[testng] [2025-03-06 00:38:59,000] [pool-1-thread-4] Initializing /data/iplab/Blend_Fitc.IPL:
[testng] 00:38:59,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:38:59,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:59,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-06_00-38-59.log]
[testng] 00:38:59,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@31949e61 - End of configuration.
[testng] [2025-03-06 00:38:59,114] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZCh.tif:
[testng] 00:38:59,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:38:59,114 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:59,115 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-06_00-38-59.log]
[testng] 00:38:59,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2878c1ae - End of configuration.
[testng] [2025-03-06 00:38:59,881] [pool-1-thread-2] Initializing /data/fluoview/Sample_XYZ.TIF:
[testng] 00:38:59,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:38:59,881 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:38:59,882 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-06_00-38-59.log]
[testng] 00:38:59,882 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6057f525 - End of configuration.
[testng] [2025-03-06 00:39:03,505] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3:
[testng] [2025-03-06 00:39:03,619] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYT.TIF:
[testng] [2025-03-06 00:39:04,231] [pool-1-thread-1] Initializing /data/fluoview/Sample_TwoCH.TIF:
[testng] [2025-03-06 00:39:04,833] [pool-1-thread-6] Initializing /data/fluoview/SpineAnimation.avi:
[testng] [2025-03-06 00:39:05,019] [pool-1-thread-11] Initializing /data/iplab/10x Blood and Bacteria.IPL:
[testng] [2025-03-06 00:39:05,091] [pool-1-thread-8] Initializing /data/iplab/3t3 Cell.IPL:
[testng] [2025-03-06 00:39:05,171] [pool-1-thread-4] Initializing /data/fluoview/sample_labled_XYTCh.tif:
[testng] [2025-03-06 00:39:06,823] [pool-1-thread-8] Initializing /data/iplab/16Bit XRay.IPL:
[testng] [2025-03-06 00:39:07,027] [pool-1-thread-10] Initializing /data/fluoview/Sample_ThreeCH.TIF:
[testng] [2025-03-06 00:39:07,615] [pool-1-thread-11] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3:
[testng] [2025-03-06 00:39:08,141] [pool-1-thread-3] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm:
[testng] [2025-03-06 00:39:08,554] [pool-1-thread-7] Initializing /data/iplab/Chromosomes.IPL:
[testng] [2025-03-06 00:39:08,634] [pool-1-thread-2] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm:
[testng] [2025-03-06 00:39:09,051] [pool-1-thread-5] Initializing /data/iplab/Blend_Tritc.IPL:
[testng] [2025-03-06 00:39:09,305] [pool-1-thread-6] Initializing /data/fluoview/Sample_XT.tif:
[testng] [2025-03-06 00:39:09,840] [pool-1-thread-8] Initializing /data/iplab/Color Histology.IPL:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1484, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 minutes 30 seconds
Finished: SUCCESS