Started by upstream project "BIOFORMATS-test-repo" build number 366 originally caused by: Started by upstream project "Trigger" build number 392 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins16447012890605355363.sh + '[' pict = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58344_merge_ci -v /uod/idr/repos/curated/pict:/data -v /uod/idr-scratch/merge-ci/curated/pict:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:54:27,408 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:54:27,409 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 00:54:27,409 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:54:27,411 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:54:27,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:54:27,412 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:54:27,412 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:54:27,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:54:27,413 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:54:27,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:54:27,414 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:54:27,415 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:54:27,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:54:27,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:54:27,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:54:27,635 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:54:27,642 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:54:27,642 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:54:27,642 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:54:27,643 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:54:27,643 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 00:54:27,644 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 00:54:27,644 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 231 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-06 00:54:27,653] [main] java.version = 21 [testng] 00:54:27,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:54:27,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:27,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-06_00-54-27.log] [testng] 00:54:27,716 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-06 00:54:27,718] [main] testng.directory = /data [testng] [2025-03-06 00:54:27,718] [main] testng.configDirectory = /config [testng] [2025-03-06 00:54:27,729] [main] testng.multiplier = 1.0 [testng] [2025-03-06 00:54:27,730] [main] testng.in-memory = false [testng] [2025-03-06 00:54:27,730] [main] testng.allow-missing = false [testng] [2025-03-06 00:54:27,730] [main] user.language = en [testng] [2025-03-06 00:54:27,730] [main] user.country = ${user.country} [testng] [2025-03-06 00:54:27,730] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-06 00:54:28,414] [main] ---------------------------------------- [testng] [2025-03-06 00:54:28,414] [main] Total files: 25 [testng] [2025-03-06 00:54:28,414] [main] Scan time: 0.684 s (27 ms/file) [testng] [2025-03-06 00:54:28,415] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 25 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-06 00:54:32,201] [pool-1-thread-1] Initializing /data/jqd/sixteenBit.pict: [testng] 00:54:32,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:54:32,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:32,203 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-06_00-54-32.log] [testng] 00:54:32,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45617bf6 - End of configuration. [testng] [2025-03-06 00:54:32,278] [pool-1-thread-12] Initializing /data/misc/planet.png: [testng] 00:54:32,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:54:32,278 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:32,279 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-06_00-54-32.log] [testng] 00:54:32,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ba95b59 - End of configuration. [testng] [2025-03-06 00:54:32,303] [pool-1-thread-11] Initializing /data/brian/images/MARBLES_RGB.pct: [testng] 00:54:32,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:54:32,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:32,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-06_00-54-32.log] [testng] 00:54:32,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@201b024c - End of configuration. [testng] [2025-03-06 00:54:32,429] [pool-1-thread-10] Initializing /data/brian/images/WHT.PCT: [testng] 00:54:32,429 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:54:32,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:32,431 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-06_00-54-32.log] [testng] 00:54:32,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b89bd71 - End of configuration. [testng] [2025-03-06 00:54:32,547] [pool-1-thread-9] Initializing /data/jqd/mire32.pict: [testng] 00:54:32,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:54:32,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:32,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-06_00-54-32.log] [testng] 00:54:32,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cac88ed - End of configuration. [testng] [2025-03-06 00:54:32,655] [pool-1-thread-8] Initializing /data/jqd/mireSixteen.pict: [testng] 00:54:32,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:54:32,656 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:32,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-06_00-54-32.log] [testng] 00:54:32,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67ced753 - End of configuration. [testng] [2025-03-06 00:54:32,754] [pool-1-thread-7] Initializing /data/wayne/PotatoMeristem.pict: [testng] 00:54:32,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:54:32,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:32,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-06_00-54-32.log] [testng] 00:54:32,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@339e99d1 - End of configuration. [testng] [2025-03-06 00:54:32,903] [pool-1-thread-6] Initializing /data/brian/images/MARBLES_B24.PCT: [testng] 00:54:32,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:54:32,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:32,905 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-06_00-54-32.log] [testng] 00:54:32,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27c0fc43 - End of configuration. [testng] [2025-03-06 00:54:33,223] [pool-1-thread-5] Initializing /data/misc/swlogo.pict: [testng] 00:54:33,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:54:33,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:33,225 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-06_00-54-33.log] [testng] 00:54:33,225 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23486705 - End of configuration. [testng] [2025-03-06 00:54:33,330] [pool-1-thread-4] Initializing /data/brian/images/VENUS.pct: [testng] 00:54:33,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:54:33,330 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:33,331 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-06_00-54-33.log] [testng] 00:54:33,331 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7418af50 - End of configuration. [testng] [2025-03-06 00:54:33,440] [pool-1-thread-3] Initializing /data/brian/images/MARBLES_B32.pct: [testng] 00:54:33,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:54:33,440 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:33,441 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-06_00-54-33.log] [testng] 00:54:33,441 |-INFO in ch.qos.logback.core.sift.SiftProcessor@509b7c2f - End of configuration. [testng] [2025-03-06 00:54:33,690] [pool-1-thread-2] Initializing /data/brian/images/BLK.PCT: [testng] 00:54:33,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:54:33,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:54:33,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-06_00-54-33.log] [testng] 00:54:33,692 |-INFO in ch.qos.logback.core.sift.SiftProcessor@115d85fe - End of configuration. [testng] [2025-03-06 00:54:35,677] [pool-1-thread-5] Initializing /data/misc/planet2.pict: [testng] [2025-03-06 00:54:35,763] [pool-1-thread-9] Initializing /data/brian/images/FLAG_B32_COMPRESSED.pct: [testng] [2025-03-06 00:54:35,820] [pool-1-thread-8] Initializing /data/brian/images/GRN.PCT: [testng] [2025-03-06 00:54:35,955] [pool-1-thread-12] Initializing /data/jqd/32bit.pict: [testng] [2025-03-06 00:54:36,166] [pool-1-thread-1] Initializing /data/brian/images/BLU.PCT: [testng] [2025-03-06 00:54:36,493] [pool-1-thread-10] Initializing /data/brian/images/MARBLES_B32_COMPRESSED.pct: [testng] [2025-03-06 00:54:36,657] [pool-1-thread-2] Initializing /data/brian/images/YEL.PCT: [testng] [2025-03-06 00:54:36,828] [pool-1-thread-4] Initializing /data/brian/images/TRU256.PCT: [testng] [2025-03-06 00:54:36,937] [pool-1-thread-7] Initializing /data/brian/images/FLAG_B32.pct: [testng] [2025-03-06 00:54:37,038] [pool-1-thread-11] Initializing /data/brian/images/RED.PCT: [testng] [2025-03-06 00:54:37,732] [pool-1-thread-3] Initializing /data/brian/images/FLAG_RGB.pct: [testng] [2025-03-06 00:54:37,981] [pool-1-thread-6] Initializing /data/brian/images/FLAG_B24.PCT: [testng] [2025-03-06 00:54:38,432] [pool-1-thread-9] Initializing /data/misc/planet.pict: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1325, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 15 seconds Finished: SUCCESS