Started by upstream project "BIOFORMATS-test-repo" build number 366
originally caused by:
Started by upstream project "Trigger" build number 392
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins13078795695926155632.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58388_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:37:12,054 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 02:37:12,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service.
[testng] 02:37:12,055 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:37:12,056 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:37:12,057 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:37:12,057 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:37:12,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:37:12,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:37:12,058 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:37:12,058 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:37:12,058 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:37:12,059 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:37:12,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:37:12,210 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:37:12,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:37:12,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:37:12,239 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:37:12,240 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:37:12,240 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:37:12,240 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:37:12,240 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration.
[testng] 02:37:12,241 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point
[testng] 02:37:12,241 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-06 02:37:12,250] [main] java.version = 21
[testng] 02:37:12,253 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:37:12,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:12,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-06_02-37-12.log]
[testng] 02:37:12,296 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration.
[testng] [2025-03-06 02:37:12,297] [main] testng.directory = /data
[testng] [2025-03-06 02:37:12,297] [main] testng.configDirectory = /config
[testng] [2025-03-06 02:37:12,306] [main] testng.multiplier = 1.0
[testng] [2025-03-06 02:37:12,306] [main] testng.in-memory = false
[testng] [2025-03-06 02:37:12,306] [main] testng.allow-missing = false
[testng] [2025-03-06 02:37:12,306] [main] user.language = en
[testng] [2025-03-06 02:37:12,306] [main] user.country = ${user.country}
[testng] [2025-03-06 02:37:12,306] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-06 02:37:12,792] [main] ----------------------------------------
[testng] [2025-03-06 02:37:12,792] [main] Total files: 19
[testng] [2025-03-06 02:37:12,793] [main] Scan time: 0.486 s (25 ms/file)
[testng] [2025-03-06 02:37:12,793] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-06 02:37:27,213] [pool-1-thread-1] Initializing /data/samples/200R PICT0002.MRW:
[testng] 02:37:27,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:37:27,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:27,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-06_02-37-27.log]
[testng] 02:37:27,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@165cf591 - End of configuration.
[testng] [2025-03-06 02:37:27,777] [pool-1-thread-12] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 02:37:27,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:37:27,777 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:27,778 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-06_02-37-27.log]
[testng] 02:37:27,778 |-INFO in ch.qos.logback.core.sift.SiftProcessor@295a7e88 - End of configuration.
[testng] [2025-03-06 02:37:28,261] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 02:37:28,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:37:28,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:28,263 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-06_02-37-28.log]
[testng] 02:37:28,264 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66123dd0 - End of configuration.
[testng] [2025-03-06 02:37:28,818] [pool-1-thread-10] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] 02:37:28,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:37:28,818 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:28,819 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-06_02-37-28.log]
[testng] 02:37:28,820 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6131348 - End of configuration.
[testng] [2025-03-06 02:37:29,372] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] 02:37:29,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:37:29,372 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:29,373 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-06_02-37-29.log]
[testng] 02:37:29,373 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ed2914 - End of configuration.
[testng] [2025-03-06 02:37:29,969] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] 02:37:29,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:37:29,969 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:29,970 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-06_02-37-29.log]
[testng] 02:37:29,970 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4eaef7c8 - End of configuration.
[testng] [2025-03-06 02:37:30,583] [pool-1-thread-7] Initializing /data/samples/400R PICT0003.MRW:
[testng] 02:37:30,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:37:30,584 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:30,584 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-06_02-37-30.log]
[testng] 02:37:30,585 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a3bbdd5 - End of configuration.
[testng] [2025-03-06 02:37:31,162] [pool-1-thread-6] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 02:37:31,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:37:31,162 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:31,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-06_02-37-31.log]
[testng] 02:37:31,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ec4cef8 - End of configuration.
[testng] [2025-03-06 02:37:31,721] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 02:37:31,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:37:31,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:31,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-06_02-37-31.log]
[testng] 02:37:31,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6de033c5 - End of configuration.
[testng] [2025-03-06 02:37:32,304] [pool-1-thread-4] Initializing /data/samples/800R PICT0010.MRW:
[testng] 02:37:32,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:37:32,305 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:32,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-06_02-37-32.log]
[testng] 02:37:32,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@29ce1dcf - End of configuration.
[testng] [2025-03-06 02:37:32,866] [pool-1-thread-3] Initializing /data/samples/3200R PICT0006.MRW:
[testng] 02:37:32,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:37:32,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:32,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-06_02-37-32.log]
[testng] 02:37:32,868 |-INFO in ch.qos.logback.core.sift.SiftProcessor@55ebbee6 - End of configuration.
[testng] [2025-03-06 02:37:33,480] [pool-1-thread-2] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 02:37:33,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:37:33,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:33,482 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-06_02-37-33.log]
[testng] 02:37:33,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6dfc6800 - End of configuration.
[testng] [2025-03-06 02:37:43,545] [pool-1-thread-11] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] [2025-03-06 02:37:44,098] [pool-1-thread-2] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] [2025-03-06 02:37:44,671] [pool-1-thread-6] Initializing /data/samples/1600R PICT0005.MRW:
[testng] [2025-03-06 02:37:45,231] [pool-1-thread-4] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] [2025-03-06 02:37:45,803] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] [2025-03-06 02:37:46,434] [pool-1-thread-8] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2025-03-06 02:37:46,943] [pool-1-thread-5] Initializing /data/samples/100R PICT0001.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 46 seconds
Finished: SUCCESS