Started by upstream project "BIOFORMATS-test-repo" build number 366
originally caused by:
Started by upstream project "Trigger" build number 392
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins166540535430393190.sh
+ '[' zeiss-tiff = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58422_merge_ci -v /uod/idr/repos/curated/zeiss-tiff:/data -v /uod/idr-scratch/merge-ci/curated/zeiss-tiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:37:31,791 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 04:37:31,793 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service.
[testng] 04:37:31,793 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:37:31,793 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:37:31,794 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:37:31,794 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:37:31,794 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:37:31,794 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:37:31,795 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:37:31,795 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:37:31,796 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:37:31,796 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:37:31,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:37:31,947 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:37:31,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:37:31,971 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:37:31,977 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:37:31,977 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:37:31,977 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:37:31,977 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:37:31,978 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration.
[testng] 04:37:31,978 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point
[testng] 04:37:31,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-06 04:37:31,987] [main] java.version = 21
[testng] 04:37:31,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:37:31,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:37:32,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-06_04-37-32.log]
[testng] 04:37:32,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration.
[testng] [2025-03-06 04:37:32,033] [main] testng.directory = /data
[testng] [2025-03-06 04:37:32,034] [main] testng.configDirectory = /config
[testng] [2025-03-06 04:37:32,042] [main] testng.multiplier = 1.0
[testng] [2025-03-06 04:37:32,043] [main] testng.in-memory = false
[testng] [2025-03-06 04:37:32,043] [main] testng.allow-missing = false
[testng] [2025-03-06 04:37:32,043] [main] user.language = en
[testng] [2025-03-06 04:37:32,043] [main] user.country = ${user.country}
[testng] [2025-03-06 04:37:32,043] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-06 04:40:09,345] [main] ----------------------------------------
[testng] [2025-03-06 04:40:09,345] [main] Total files: 15735
[testng] [2025-03-06 04:40:09,346] [main] Scan time: 157.302 s (9 ms/file)
[testng] [2025-03-06 04:40:09,346] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 125 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-06 04:43:16,901] [pool-1-thread-1] Initializing /data/converted/markus/HeLa-Reggie-GFP_ZT_fast-DCV-CI-measured-PSF.tif:
[testng] 04:43:16,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 04:43:16,902 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:16,903 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-06_04-43-16.log]
[testng] 04:43:16,903 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b3adf2b - End of configuration.
[testng] [2025-03-06 04:43:18,577] [pool-1-thread-12] Initializing /data/converted/james/Sylvain_run3_1Gy_Live7-2008-0019.tif:
[testng] 04:43:18,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 04:43:18,577 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:18,578 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-06_04-43-18.log]
[testng] 04:43:18,578 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57e6d10c - End of configuration.
[testng] [2025-03-06 04:43:19,706] [pool-1-thread-11] Initializing /data/converted/ville/MultiCh-RGB/pollen_bw.tif:
[testng] 04:43:19,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 04:43:19,706 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:19,707 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-06_04-43-19.log]
[testng] 04:43:19,707 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f1b70ce - End of configuration.
[testng] [2025-03-06 04:43:21,128] [pool-1-thread-10] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sidebyside.tif:
[testng] 04:43:21,128 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 04:43:21,129 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:21,129 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-06_04-43-21.log]
[testng] 04:43:21,130 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dacb45d - End of configuration.
[testng] [2025-03-06 04:43:23,178] [pool-1-thread-9] Initializing /data/converted/converted/2chz.tif:
[testng] 04:43:23,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 04:43:23,178 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:23,179 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-06_04-43-23.log]
[testng] 04:43:23,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@219e67ce - End of configuration.
[testng] [2025-03-06 04:43:24,298] [pool-1-thread-8] Initializing /data/converted/joseph/E-2009-0004.tif:
[testng] 04:43:24,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 04:43:24,299 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:24,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-06_04-43-24.log]
[testng] 04:43:24,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a23b77a - End of configuration.
[testng] [2025-03-06 04:43:26,125] [pool-1-thread-7] Initializing /data/converted/ville/MultiCh-RGB/pollen_rgb.tif:
[testng] 04:43:26,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 04:43:26,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:26,126 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-06_04-43-26.log]
[testng] 04:43:26,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cd97791 - End of configuration.
[testng] [2025-03-06 04:43:27,880] [pool-1-thread-6] Initializing /data/converted/vladan/vladan.tif:
[testng] 04:43:27,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 04:43:27,880 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:27,881 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-06_04-43-27.log]
[testng] 04:43:27,881 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b16d39c - End of configuration.
[testng] [2025-03-06 04:43:29,439] [pool-1-thread-5] Initializing /data/converted/karsten/Bild1.tif:
[testng] 04:43:29,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 04:43:29,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:29,440 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-06_04-43-29.log]
[testng] 04:43:29,440 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3bce6f07 - End of configuration.
[testng] [2025-03-06 04:43:30,977] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_25.tif:
[testng] 04:43:30,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 04:43:30,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:30,978 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-06_04-43-30.log]
[testng] 04:43:30,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25726066 - End of configuration.
[testng] [2025-03-06 04:43:32,752] [pool-1-thread-3] Initializing /data/converted/thomas/test_axiocam_3_1.tif:
[testng] 04:43:32,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 04:43:32,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:32,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-06_04-43-32.log]
[testng] 04:43:32,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ba62a0 - End of configuration.
[testng] [2025-03-06 04:43:34,326] [pool-1-thread-2] Initializing /data/dorai/F_ZImage10_(X10)_C.tif:
[testng] 04:43:34,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 04:43:34,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:43:34,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-06_04-43-34.log]
[testng] 04:43:34,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d003eef - End of configuration.
[testng] [2025-03-06 04:44:12,651] [pool-1-thread-2] Initializing /data/converted/markus/PC12_neuroblastoma_Fura2_exp#9.tif:
[testng] [2025-03-06 04:44:17,513] [pool-1-thread-3] Initializing /data/converted/darren/section0001_w1.tif:
[testng] [2025-03-06 04:44:19,705] [pool-1-thread-7] Initializing /data/converted/markus/Brain_high_dynamic_range_imaging_Z-stack.tif:
[testng] [2025-03-06 04:44:22,717] [pool-1-thread-11] Initializing /data/samples/mri-stack/mri-stack.tif:
[testng] [2025-03-06 04:44:25,675] [pool-1-thread-5] Initializing /data/converted/dietmar/137.tif:
[testng] [2025-03-06 04:44:57,858] [pool-1-thread-11] Initializing /data/converted/miso/Aufnahme-184058-0002.tif:
[testng] [2025-03-06 04:45:02,461] [pool-1-thread-3] Initializing /data/scott/Slide133-01.tif:
[testng] [2025-03-06 04:45:29,155] [pool-1-thread-11] Initializing /data/converted/michel/c.tif:
[testng] [2025-03-06 04:45:39,582] [pool-1-thread-3] Initializing /data/converted/david/snap-181518-0001.tif:
[testng] [2025-03-06 04:46:04,150] [pool-1-thread-12] Initializing /data/qa-21570/250618_J1_diff_D3-2-0004.tif:
[testng] [2025-03-06 04:46:17,333] [pool-1-thread-3] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_08.tif:
[testng] [2025-03-06 04:46:20,143] [pool-1-thread-11] Initializing /data/converted/karsten/Bild2.tif:
[testng] [2025-03-06 04:46:43,322] [pool-1-thread-12] Initializing /data/converted/markus/Mouse-newborn-panorama.tif:
[testng] [2025-03-06 04:47:11,392] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_11.tif:
[testng] [2025-03-06 04:47:38,749] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_15.tif:
[testng] [2025-03-06 04:47:47,094] [pool-1-thread-12] Initializing /data/converted/lior/live+cf2b.tif:
[testng] [2025-03-06 04:48:51,968] [pool-1-thread-12] Initializing /data/othmar/mozaic.tif:
[testng] [2025-03-06 04:49:19,607] [pool-1-thread-7] Initializing /data/converted/michel/b.tif:
[testng] [2025-03-06 04:50:07,322] [pool-1-thread-7] Initializing /data/converted/markus/HighSpeedParas.tif:
[testng] [2025-03-06 04:51:19,645] [pool-1-thread-6] Initializing /data/converted/rolf/example_1-2010_11_25.tif:
[testng] [2025-03-06 04:51:54,150] [pool-1-thread-6] Initializing /data/converted/markus/Mouse-newborn-panorama_lossless_compressed.tif:
[testng] [2025-03-06 04:52:47,365] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_14.tif:
[testng] [2025-03-06 04:53:30,500] [pool-1-thread-12] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_6.tif:
[testng] [2025-03-06 04:53:42,505] [pool-1-thread-5] Initializing /data/converted/jonas/10_0907_multidrug-0001_AB01_03.tif:
[testng] [2025-03-06 04:53:57,471] [pool-1-thread-4] Initializing /data/converted/cecilia/day 1 naked nb positive 1-2007-0055.tif:
[testng] [2025-03-06 04:54:41,202] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_10.tif:
[testng] [2025-03-06 04:54:49,859] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_8.tif:
[testng] [2025-03-06 04:56:14,479] [pool-1-thread-11] Initializing /data/converted/markus/Hypocampus_Tiles_with_stiching.tif:
[testng] [2025-03-06 04:56:38,329] [pool-1-thread-10] Initializing /data/converted/markus/Long_TL_CElegans.tif:
[testng] [2025-03-06 04:56:53,516] [pool-1-thread-9] Initializing /data/converted/jeffrey/750-30-03.tif:
[testng] [2025-03-06 04:57:33,464] [pool-1-thread-9] Initializing /data/converted/converted/wtzer_series76_z003_ch00-with-rois.tif:
[testng] [2025-03-06 04:58:05,289] [pool-1-thread-9] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-0016.tif:
[testng] [2025-03-06 04:59:30,218] [pool-1-thread-11] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-widefield.tif:
[testng] [2025-03-06 05:01:53,950] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_23.tif:
[testng] [2025-03-06 05:02:20,797] [pool-1-thread-6] Initializing /data/converted/converted/deconvolve6_pseudo_tl000_zs000.tif:
[testng] [2025-03-06 05:02:36,079] [pool-1-thread-12] Initializing /data/converted/dietmar/hmads-24h-bac1-7-af647-af488-rho-1day-hyb-csk-2007-06-29-0008_position(113).tif:
[testng] [2025-03-06 05:03:06,578] [pool-1-thread-6] Initializing /data/converted/susan/BY4741NQ2.tif:
[testng] [2025-03-06 05:03:47,989] [pool-1-thread-4] Initializing /data/converted/markus/Branchiostoma_6x12_MosaiX_Tiles_color.tif:
[testng] [2025-03-06 05:03:55,813] [pool-1-thread-6] Initializing /data/converted/michel/d.tif:
[testng] [2025-03-06 05:04:42,032] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_13.tif:
[testng] [2025-03-06 05:04:49,899] [pool-1-thread-6] Initializing /data/converted/lior/live+cf5b.tif:
[testng] [2025-03-06 05:06:11,323] [pool-1-thread-6] Initializing /data/converted/markus/Mouse-newborn-panorama_JPEG_5percent_compressed.tif:
[testng] [2025-03-06 05:07:20,679] [pool-1-thread-6] Initializing /data/scott/Slide133-11.tif:
[testng] [2025-03-06 05:08:04,472] [pool-1-thread-3] Initializing /data/converted/monica/Monica_elegans_movie.tif:
[testng] [2025-03-06 05:08:11,768] [pool-1-thread-6] Initializing /data/converted/dan/zstack_convalaria.tif:
[testng] [2025-03-06 05:09:03,268] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_17.tif:
[testng] [2025-03-06 05:13:14,348] [pool-1-thread-4] Initializing /data/converted/sebastien/F1.tif:
[testng] [2025-03-06 05:13:21,748] [pool-1-thread-12] Initializing /data/converted/stephan/notok1.tif:
[testng] [2025-03-06 05:13:43,415] [pool-1-thread-9] Initializing /data/converted/eirinn/12_16_2009-01-tara-hd-triple-5to15_position(1)5.tif:
[testng] [2025-03-06 05:14:30,189] [pool-1-thread-11] Initializing /data/converted/eirinn/demo-tile.tif:
[testng] [2025-03-06 05:15:55,121] [pool-1-thread-8] Initializing /data/converted/michel/e.tif:
[testng] [2025-03-06 05:16:03,010] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_18.tif:
[testng] [2025-03-06 05:16:36,209] [pool-1-thread-12] Initializing /data/converted/joseph/BEST_EXAMPLE_LONGER_EXPOSURE.tif:
[testng] [2025-03-06 05:16:44,960] [pool-1-thread-5] Initializing /data/converted/shalin/ibidiuslide1-timelapse3_mid2.tif:
[testng] [2025-03-06 05:17:09,823] [pool-1-thread-8] Initializing /data/scott/Slide133-08.tif:
[testng] [2025-03-06 05:17:54,756] [pool-1-thread-8] Initializing /data/converted/markus/Material_color_image_HRc_microscanned_4x3K.tif:
[testng] [2025-03-06 05:18:28,387] [pool-1-thread-12] Initializing /data/converted/converted/2chzt.tif:
[testng] [2025-03-06 05:18:36,028] [pool-1-thread-8] Initializing /data/converted/rachel/40K 30s A1.tif:
[testng] [2025-03-06 05:18:47,996] [pool-1-thread-4] Initializing /data/scott/Slide133-04.tif:
[testng] [2025-03-06 05:18:50,587] [pool-1-thread-1] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_21.tif:
[testng] [2025-03-06 05:19:31,918] [pool-1-thread-8] Initializing /data/converted/kelsey/650x514BW.tif:
[testng] [2025-03-06 05:19:35,058] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_22.tif:
[testng] [2025-03-06 05:20:12,934] [pool-1-thread-8] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_5.tif:
[testng] [2025-03-06 05:20:31,254] [pool-1-thread-6] Initializing /data/converted/joseph/E-2009_0022.tif:
[testng] [2025-03-06 05:22:40,707] [pool-1-thread-5] Initializing /data/converted/converted/damian.tif:
[testng] [2025-03-06 05:23:03,748] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_16.tif:
[testng] [2025-03-06 05:23:32,835] [pool-1-thread-5] Initializing /data/converted/strand/2Colors1Plane.tif:
[testng] [2025-03-06 05:25:24,812] [pool-1-thread-5] Initializing /data/converted/darren/section0002_w1.tif:
[testng] [2025-03-06 05:26:15,434] [pool-1-thread-5] Initializing /data/converted/rolf/example_2-2010_11_25.tif:
[testng] [2025-03-06 05:27:14,414] [pool-1-thread-5] Initializing /data/qa-21570/250618_J1_diff_D3-2-0002.tif:
[testng] [2025-03-06 05:27:57,008] [pool-1-thread-5] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_24.tif:
[testng] [2025-03-06 05:30:23,589] [pool-1-thread-11] Initializing /data/converted/sebastien/test.tif:
[testng] [2025-03-06 05:33:53,691] [pool-1-thread-1] Initializing /data/converted/stephan/notok2.tif:
[testng] [2025-03-06 05:34:24,870] [pool-1-thread-8] Initializing /data/converted/converted/damian-compressed.tif:
[testng] [2025-03-06 05:34:48,751] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_9.tif:
[testng] [2025-03-06 05:35:13,309] [pool-1-thread-8] Initializing /data/qa-21570/250618_J1_diff_D3-2-0003.tif:
[testng] [2025-03-06 05:36:04,062] [pool-1-thread-8] Initializing /data/converted/markus/PhaseGFP-MosaiX-Timelapse_Tiles.tif:
[testng] [2025-03-06 05:36:16,591] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_4.tif:
[testng] [2025-03-06 05:37:49,771] [pool-1-thread-1] Initializing /data/converted/jan/SampleStack_Mosaic4x5_comb.tif:
[testng] [2025-03-06 05:39:14,294] [pool-1-thread-9] Initializing /data/converted/dan/adultnr1.tif:
[testng] [2025-03-06 05:40:59,903] [pool-1-thread-6] Initializing /data/converted/karsten/247096n3s3s9.tif:
[testng] [2025-03-06 05:41:21,301] [pool-1-thread-9] Initializing /data/converted/markus/MosaiX_irregular_Z-stack_with_autofocus.tif:
[testng] [2025-03-06 05:44:11,952] [pool-1-thread-5] Initializing /data/converted/eirinn/11_10_2009-01-lcstim-15-10-09_position(1).tif:
[testng] [2025-03-06 05:45:17,961] [pool-1-thread-6] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_19.tif:
[testng] [2025-03-06 05:47:19,808] [pool-1-thread-11] Initializing /data/converted/dietmar/dapi-texasred-0015.tif:
[testng] [2025-03-06 05:49:52,588] [pool-1-thread-4] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_12.tif:
[testng] [2025-03-06 05:50:24,670] [pool-1-thread-2] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_2.tif:
[testng] [2025-03-06 05:51:54,030] [pool-1-thread-5] Initializing /data/converted/markus/Confidence_ratio_image_PC12_neuroblastoma_Fura2_exp#9-2.tif:
[testng] [2025-03-06 05:54:35,986] [pool-1-thread-10] Initializing /data/converted/joseph/Alike_best_example_but_WORKS_FINE_maybe_cause_shorter_expose.tif:
[testng] [2025-03-06 05:55:36,249] [pool-1-thread-8] Initializing /data/converted/dietmar/138.tif:
[testng] [2025-03-06 05:58:44,480] [pool-1-thread-10] Initializing /data/converted/joseph/E-2009-0001a.tif:
[testng] [2025-03-06 05:58:51,670] [pool-1-thread-11] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_1.tif:
[testng] [2025-03-06 06:00:18,702] [pool-1-thread-9] Initializing /data/converted/gaetan/gml16_cenp-fitc_dapi_3.tif:
[testng] [2025-03-06 06:01:55,203] [pool-1-thread-6] Initializing /data/converted/markus/6ch-Z-stack_deconvolved.tif:
[testng] [2025-03-06 06:04:50,716] [pool-1-thread-2] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-ten.tif:
[testng] [2025-03-06 06:04:53,169] [pool-1-thread-4] Initializing /data/converted/kelsey/1300x1030BW.tif:
[testng] [2025-03-06 06:05:39,427] [pool-1-thread-4] Initializing /data/converted/eirinn/5_6_2009-dj9-03_a01_01.tif:
[testng] [2025-03-06 06:07:00,674] [pool-1-thread-4] Initializing /data/converted/converted/wtzer_series76_z003_ch00.tif:
[testng] [2025-03-06 06:07:48,072] [pool-1-thread-4] Initializing /data/qa-21570/20150421_HepG2_yH2AX_DAPI_0.5h_5GyDOWN_1512_cell04_SIR_ALX.dv_comp.tif:
[testng] [2025-03-06 06:08:03,937] [pool-1-thread-4] Initializing /data/converted/dietmar/hmads-bac1-bac7-af488-rho-af647_pre-2006-03-30-six.tif:
[testng] [2025-03-06 06:09:49,041] [pool-1-thread-8] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast-sectioned.tif:
[testng] [2025-03-06 06:11:35,795] [pool-1-thread-11] Initializing /data/converted/kelsey/432x342BW.tif:
[testng] [2025-03-06 06:12:20,191] [pool-1-thread-11] Initializing /data/converted/markus/VivaTome_sample/cell 40 w raw fast.tif:
[testng] [2025-03-06 06:12:33,086] [pool-1-thread-2] Initializing /data/converted/eirinn/12_2_2009-16-hes5-brdu-proper_position(52).tif:
[testng] [2025-03-06 06:13:49,746] [pool-1-thread-9] Initializing /data/converted/eirinn/pharm3-saline2-0147_11.tif:
[testng] [2025-03-06 06:15:45,229] [pool-1-thread-4] Initializing /data/converted/othmar/mozaic.tif:
[testng] [2025-03-06 06:16:18,117] [pool-1-thread-10] Initializing /data/converted/othmar/z-stack.tif:
[testng] [2025-03-06 06:18:36,910] [pool-1-thread-6] Initializing /data/converted/rachel/40K 30s A2.tif:
[testng] [2025-03-06 06:19:36,544] [pool-1-thread-2] Initializing /data/converted/markus/30channels_exposure-series.tif:
[testng] [2025-03-06 06:19:47,167] [pool-1-thread-6] Initializing /data/converted/michel/a.tif:
[testng] [2025-03-06 06:20:28,668] [pool-1-thread-6] Initializing /data/converted/markus/Smart_Experiment_4ch-T-time-stitched.tif:
[testng] [2025-03-06 06:21:37,222] [pool-1-thread-12] Initializing /data/converted/converted/mri-stack.tif:
[testng] [2025-03-06 06:22:37,855] [pool-1-thread-12] Initializing /data/converted/nicolas/image.tif:
[testng] 06:42:25,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:42:25,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:42:25,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-06_06-42-25.log]
[testng] 06:42:25,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66502cac - End of configuration.
[testng] 07:13:47,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 07:13:47,959 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:13:47,961 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-06_07-13-47.log]
[testng] 07:13:47,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fbe49e8 - End of configuration.
[testng] 07:18:02,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:18:02,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:18:02,625 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-06_07-18-02.log]
[testng] 07:18:02,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fa13835 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 6625, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 160 minutes 35 seconds
Finished: SUCCESS