Started by upstream project "BIOFORMATS-test-repo" build number 367
originally caused by:
Started by upstream project "Trigger" build number 393
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins1389725384197478899.sh
+ '[' tillvision = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58532_merge_ci -v /uod/idr/repos/curated/tillvision:/data -v /uod/idr-scratch/merge-ci/curated/tillvision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:20:19,590 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 02:20:19,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service.
[testng] 02:20:19,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:20:19,593 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:20:19,594 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:20:19,594 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:20:19,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:20:19,594 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:20:19,595 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:20:19,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:20:19,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:20:19,595 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:20:19,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:20:19,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:20:19,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:20:19,861 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:20:19,869 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:20:19,869 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:20:19,869 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:20:19,870 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:20:19,870 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration.
[testng] 02:20:19,871 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point
[testng] 02:20:19,871 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 276 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-07 02:20:19,881] [main] java.version = 1.8.0_342
[testng] 02:20:19,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:20:19,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:20:19,927 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_02-20-19.log]
[testng] 02:20:19,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration.
[testng] [2025-03-07 02:20:19,930] [main] testng.directory = /data
[testng] [2025-03-07 02:20:19,930] [main] testng.configDirectory = /config
[testng] [2025-03-07 02:20:19,942] [main] testng.multiplier = 1.0
[testng] [2025-03-07 02:20:19,943] [main] testng.in-memory = false
[testng] [2025-03-07 02:20:19,943] [main] testng.allow-missing = false
[testng] [2025-03-07 02:20:19,943] [main] user.language = en
[testng] [2025-03-07 02:20:19,943] [main] user.country = ${user.country}
[testng] [2025-03-07 02:20:19,943] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2025-03-07 02:20:51,142] [main] ----------------------------------------
[testng] [2025-03-07 02:20:51,142] [main] Total files: 46
[testng] [2025-03-07 02:20:51,142] [main] Scan time: 31.199 s (678 ms/file)
[testng] [2025-03-07 02:20:51,142] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 25 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-07 02:22:19,789] [pool-1-thread-1] Initializing /data/venu/060310/Visible parts of Fluorescence 380nm1_test1.tif:
[testng] 02:22:19,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:22:19,789 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:19,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_02-22-19.log]
[testng] 02:22:19,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@683a3efd - End of configuration.
[testng] [2025-03-07 02:22:22,882] [pool-1-thread-12] Initializing /data/gerhard/test.vws:
[testng] 02:22:22,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:22:22,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:22,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-07_02-22-22.log]
[testng] 02:22:22,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47260f61 - End of configuration.
[testng] [2025-03-07 02:22:23,843] [pool-1-thread-11] Initializing /data/venu/060310/1_glass bottom dish snapshot.tif:
[testng] 02:22:23,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:22:23,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:23,844 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-07_02-22-23.log]
[testng] 02:22:23,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b0c478 - End of configuration.
[testng] [2025-03-07 02:22:26,799] [pool-1-thread-10] Initializing /data/venu/060310/060310_glass_Wrkspc1.vws:
[testng] 02:22:26,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:22:26,799 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:26,800 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-07_02-22-26.log]
[testng] 02:22:26,800 |-INFO in ch.qos.logback.core.sift.SiftProcessor@ab4e390 - End of configuration.
[testng] [2025-03-07 02:22:29,789] [pool-1-thread-9] Initializing /data/samples/fibre.vws:
[testng] 02:22:29,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:22:29,790 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:29,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_02-22-29.log]
[testng] 02:22:29,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59f1e554 - End of configuration.
[testng] [2025-03-07 02:22:30,569] [pool-1-thread-8] Initializing /data/venu/061410/Rat LD muscle fibers Wrkspc3.vws:
[testng] 02:22:30,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:22:30,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:30,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_02-22-30.log]
[testng] 02:22:30,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6e9b83 - End of configuration.
[testng] [2025-03-07 02:22:32,201] [pool-1-thread-7] Initializing /data/qinghai/TillvisIOn Sample Dataset/Bgr.vws:
[testng] 02:22:32,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:22:32,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:32,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_02-22-32.log]
[testng] 02:22:32,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c8f7100 - End of configuration.
[testng] [2025-03-07 02:22:33,551] [pool-1-thread-6] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc1.vws:
[testng] 02:22:33,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:22:33,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:33,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_02-22-33.log]
[testng] 02:22:33,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@601941cd - End of configuration.
[testng] [2025-03-07 02:22:34,674] [pool-1-thread-5] Initializing /data/ian/working_tillvision_vws/20120322.vws:
[testng] 02:22:34,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:22:34,674 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:34,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_02-22-34.log]
[testng] 02:22:34,675 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f7330ef - End of configuration.
[testng] [2025-03-07 02:22:39,694] [pool-1-thread-4] Initializing /data/andreas/090812E4.vws:
[testng] 02:22:39,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:22:39,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:39,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_02-22-39.log]
[testng] 02:22:39,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@39c6e795 - End of configuration.
[testng] [2025-03-07 02:22:43,605] [pool-1-thread-3] Initializing /data/imagesc-84715/not working.vws:
[testng] 02:22:43,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:22:43,605 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:43,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_02-22-43.log]
[testng] 02:22:43,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@473f3a79 - End of configuration.
[testng] [2025-03-07 02:22:44,766] [pool-1-thread-2] Initializing /data/venu/060310/Fluorescence 340nm1_test 1.tif:
[testng] 02:22:44,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:22:44,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:22:44,767 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_02-22-44.log]
[testng] 02:22:44,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37f851ab - End of configuration.
[testng] [2025-03-07 02:22:57,626] [pool-1-thread-9] Initializing /data/ian/non_working_tillvision_vws/20120404.vws:
[testng] [2025-03-07 02:23:02,772] [pool-1-thread-12] Initializing /data/venu/060310/drug addition _BAM.vws:
[testng] [2025-03-07 02:23:06,707] [pool-1-thread-11] Initializing /data/imagesc-84715/working.vws:
[testng] [2025-03-07 02:23:08,474] [pool-1-thread-1] Initializing /data/andreas/090811E1.vws:
[testng] [2025-03-07 02:23:19,286] [pool-1-thread-2] Initializing /data/venu/060310/1_ drug addition actual test_ glass_Wrkspc6.vws:
[testng] [2025-03-07 02:23:44,847] [pool-1-thread-3] Initializing /data/christian/080807ionophore/080807ionophore3.vws:
[testng] [2025-03-07 02:23:51,452] [pool-1-thread-6] Initializing /data/venu/060310/1_glass bottom dish_fluorescence snapshot.tif:
[testng] [2025-03-07 02:24:00,267] [pool-1-thread-7] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated BAM_Wrkspc1.vws:
[testng] [2025-03-07 02:24:09,026] [pool-1-thread-8] Initializing /data/stephan/two sequences.vws:
[testng] [2025-03-07 02:24:34,619] [pool-1-thread-6] Initializing /data/christian/080807epi/080807epi2.vws:
[testng] [2025-03-07 02:24:37,031] [pool-1-thread-12] Initializing /data/venu/060310/drug addition protocol testing_Wrkspc3.vws:
[testng] [2025-03-07 02:24:54,657] [pool-1-thread-3] Initializing /data/oliver/TillVision-Data-2-from-Oliver-Mueller-Homburg-Germany/2006 DG2 V1 Indo-1 Ratte.vws:
[testng] [2025-03-07 02:25:04,911] [pool-1-thread-11] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc2.vws:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1325, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 35 minutes 48 seconds
Finished: SUCCESS