Started by upstream project "BIOFORMATS-test-repo" build number 367
originally caused by:
Started by upstream project "Trigger" build number 393
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins861506645171282163.sh
+ '[' fuji = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58560_merge_ci -v /uod/idr/repos/curated/fuji:/data -v /uod/idr-scratch/merge-ci/curated/fuji:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 05:55:52,502 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 05:55:52,504 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service.
[testng] 05:55:52,504 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:55:52,505 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 05:55:52,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 05:55:52,505 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 05:55:52,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 05:55:52,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:55:52,506 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 05:55:52,506 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 05:55:52,507 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 05:55:52,507 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 05:55:52,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 05:55:52,731 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 05:55:52,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 05:55:52,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 05:55:52,765 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 05:55:52,766 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 05:55:52,766 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 05:55:52,766 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 05:55:52,766 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration.
[testng] 05:55:52,767 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point
[testng] 05:55:52,767 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 261 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-07 05:55:52,777] [main] java.version = 1.8.0_342
[testng] 05:55:52,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 05:55:52,780 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:55:52,823 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-07_05-55-52.log]
[testng] 05:55:52,825 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration.
[testng] [2025-03-07 05:55:52,826] [main] testng.directory = /data
[testng] [2025-03-07 05:55:52,826] [main] testng.configDirectory = /config
[testng] [2025-03-07 05:55:52,838] [main] testng.multiplier = 1.0
[testng] [2025-03-07 05:55:52,838] [main] testng.in-memory = false
[testng] [2025-03-07 05:55:52,838] [main] testng.allow-missing = false
[testng] [2025-03-07 05:55:52,838] [main] user.language = en
[testng] [2025-03-07 05:55:52,838] [main] user.country = ${user.country}
[testng] [2025-03-07 05:55:52,838] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2025-03-07 05:57:24,165] [main] ----------------------------------------
[testng] [2025-03-07 05:57:24,165] [main] Total files: 24
[testng] [2025-03-07 05:57:24,165] [main] Scan time: 91.327 s (3805 ms/file)
[testng] [2025-03-07 05:57:24,165] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 9 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-07 05:59:57,698] [pool-1-thread-1] Initializing /data/bernie/101210_Substrate10mi/101210_Substrate10mi.tif:
[testng] 05:59:57,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:59:57,699 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:59:57,700 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-07_05-59-57.log]
[testng] 05:59:57,700 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cbdba2c - End of configuration.
[testng] [2025-03-07 06:00:04,401] [pool-1-thread-9] Initializing /data/venu/TPN_membraneC_1sec.inf:
[testng] 06:00:04,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:00:04,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:04,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-07_06-00-04.log]
[testng] 06:00:04,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@124db0ef - End of configuration.
[testng] [2025-03-07 06:00:06,936] [pool-1-thread-8] Initializing /data/bernie/101210_SubstrateTest/101210_SubstrateTest.tif:
[testng] 06:00:06,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:00:06,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:06,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-07_06-00-06.log]
[testng] 06:00:06,938 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37aabff3 - End of configuration.
[testng] [2025-03-07 06:00:13,663] [pool-1-thread-7] Initializing /data/bernie/101110_Oligos_10min/101110_Oligos_10min.tif:
[testng] 06:00:13,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:00:13,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:13,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-07_06-00-13.log]
[testng] 06:00:13,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c316226 - End of configuration.
[testng] [2025-03-07 06:00:18,514] [pool-1-thread-6] Initializing /data/bernie/090810_18hours/090810_18hours.tif:
[testng] 06:00:18,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:00:18,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:18,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-07_06-00-18.log]
[testng] 06:00:18,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d3010e - End of configuration.
[testng] [2025-03-07 06:00:24,379] [pool-1-thread-5] Initializing /data/bernie/101110_Oligos_16hour/101110_Oligos_16hour.tif:
[testng] 06:00:24,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:00:24,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:24,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-07_06-00-24.log]
[testng] 06:00:24,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@511a0739 - End of configuration.
[testng] [2025-03-07 06:00:30,758] [pool-1-thread-4] Initializing /data/bernie/120411_18hrs/120411_18hrs.tif:
[testng] 06:00:30,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:00:30,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:30,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-07_06-00-30.log]
[testng] 06:00:30,760 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3815d3df - End of configuration.
[testng] [2025-03-07 06:00:37,310] [pool-1-thread-3] Initializing /data/bernie/080211_Exo_3hours/080211_Exo_3hours.tif:
[testng] 06:00:37,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:00:37,311 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:37,311 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-07_06-00-37.log]
[testng] 06:00:37,312 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7747102f - End of configuration.
[testng] [2025-03-07 06:00:44,158] [pool-1-thread-2] Initializing /data/bernie/070810_20hours/070810_20hours.tif:
[testng] 06:00:44,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:00:44,158 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:00:44,159 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-07_06-00-44.log]
[testng] 06:00:44,159 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7582e5a1 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 477, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 5 minutes 49 seconds
Finished: SUCCESS