Started by upstream project "BIOFORMATS-test-repo" build number 368 originally caused by: Started by upstream project "Trigger" build number 394 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins6679481737219029582.sh + '[' gatan = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_58607_merge_ci -v /uod/idr/repos/curated/gatan:/data -v /uod/idr-scratch/merge-ci/curated/gatan:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 00:19:10,917 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:19:10,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 00:19:10,919 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:19:10,920 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:19:10,920 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:19:10,921 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:19:10,921 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:19:10,921 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:19:10,921 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:19:10,922 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:19:10,922 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:19:10,922 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:19:11,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:19:11,092 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:19:11,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:19:11,115 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:19:11,121 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:19:11,121 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:19:11,121 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:19:11,122 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:19:11,122 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 00:19:11,122 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 00:19:11,122 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 201 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-08 00:19:11,131] [main] java.version = 11.0.16 [testng] 00:19:11,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:19:11,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:19:11,177 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-08_00-19-11.log] [testng] 00:19:11,179 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-08 00:19:11,181] [main] testng.directory = /data [testng] [2025-03-08 00:19:11,181] [main] testng.configDirectory = /config [testng] [2025-03-08 00:19:11,190] [main] testng.multiplier = 1.0 [testng] [2025-03-08 00:19:11,192] [main] testng.in-memory = false [testng] [2025-03-08 00:19:11,192] [main] testng.allow-missing = false [testng] [2025-03-08 00:19:11,192] [main] user.language = en [testng] [2025-03-08 00:19:11,192] [main] user.country = ${user.country} [testng] [2025-03-08 00:19:11,192] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-08 00:30:16,133] [main] ---------------------------------------- [testng] [2025-03-08 00:30:16,133] [main] Total files: 103 [testng] [2025-03-08 00:30:16,133] [main] Scan time: 664.941 s (6455 ms/file) [testng] [2025-03-08 00:30:16,133] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 98 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-08 01:16:22,160] [pool-1-thread-1] Initializing /data/thorsten/60kx_HAADF_03.dm3: [testng] 01:16:22,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:16:22,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:22,163 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-08_01-16-22.log] [testng] 01:16:22,163 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fd593e7 - End of configuration. [testng] [2025-03-08 01:16:26,203] [pool-1-thread-12] Initializing /data/ofra/lowloss.dm3: [testng] 01:16:26,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:16:26,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:26,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-08_01-16-26.log] [testng] 01:16:26,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@78b97149 - End of configuration. [testng] [2025-03-08 01:16:30,347] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0002.dm4: [testng] 01:16:30,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:16:30,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:30,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-08_01-16-30.log] [testng] 01:16:30,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d031e07 - End of configuration. [testng] [2025-03-08 01:16:34,341] [pool-1-thread-10] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0009.dm4: [testng] 01:16:34,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:16:34,342 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:34,342 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-08_01-16-34.log] [testng] 01:16:34,343 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a79943 - End of configuration. [testng] [2025-03-08 01:16:37,596] [pool-1-thread-9] Initializing /data/jay/samples/APC2a-e3.dm3: [testng] 01:16:37,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:16:37,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:37,596 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-08_01-16-37.log] [testng] 01:16:37,597 |-INFO in ch.qos.logback.core.sift.SiftProcessor@607f1474 - End of configuration. [testng] [2025-03-08 01:16:40,690] [pool-1-thread-8] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-96x96.tif: [testng] 01:16:40,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:16:40,690 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:16:40,691 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-08_01-16-40.log] [testng] 01:16:40,691 |-INFO in ch.qos.logback.core.sift.SiftProcessor@28afa215 - End of configuration. [testng] [2025-03-08 01:17:09,003] [pool-1-thread-7] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-799x799.tif: [testng] 01:17:09,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:17:09,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:17:09,003 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-08_01-17-09.log] [testng] 01:17:09,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a284b4e - End of configuration. [testng] [2025-03-08 01:18:24,184] [pool-1-thread-6] Initializing /data/nuno/Prefix_3VBSED_slice_0011.dm3: [testng] 01:18:24,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:18:24,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:24,185 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-08_01-18-24.log] [testng] 01:18:24,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61f8351 - End of configuration. [testng] [2025-03-08 01:18:31,630] [pool-1-thread-5] Initializing /data/samples/mode-metadata/mode_format_test.dm3: [testng] 01:18:31,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:18:31,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:31,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-08_01-18-31.log] [testng] 01:18:31,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4352a7fc - End of configuration. [testng] [2025-03-08 01:18:41,809] [pool-1-thread-4] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0047.dm4: [testng] 01:18:41,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:18:41,810 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:41,810 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-08_01-18-41.log] [testng] 01:18:41,811 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fa329f9 - End of configuration. [testng] [2025-03-08 01:18:50,764] [pool-1-thread-3] Initializing /data/jay/dnasample1.dm3: [testng] 01:18:50,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:18:50,764 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:50,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-08_01-18-50.log] [testng] 01:18:50,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1145df01 - End of configuration. [testng] [2025-03-08 01:18:59,205] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0000.dm4: [testng] 01:18:59,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:18:59,206 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:18:59,206 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-08_01-18-59.log] [testng] 01:18:59,207 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ed01331 - End of configuration. [testng] [2025-03-08 01:20:11,082] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2025-03-08 01:21:12,489] [pool-1-thread-11] Initializing /data/jay/samples/APC2a-e4.tif: [testng] [2025-03-08 01:22:09,687] [pool-1-thread-6] Initializing /data/imagesc-3719/Prefix_BSE_slice_0001.dm4: [testng] [2025-03-08 01:22:17,813] [pool-1-thread-2] Initializing /data/public/imagesc-36590/SmallMontage0001.dm4: [testng] [2025-03-08 01:22:29,482] [pool-1-thread-1] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0052.dm4: [testng] [2025-03-08 01:22:37,115] [pool-1-thread-9] Initializing /data/jay/recAmag6500dm.dm3: [testng] [2025-03-08 01:22:45,645] [pool-1-thread-10] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.tif: [testng] [2025-03-08 01:23:47,742] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0045.dm4: [testng] [2025-03-08 01:23:55,523] [pool-1-thread-5] Initializing /data/jay/camtest1.dm3: [testng] [2025-03-08 01:24:04,737] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0013.dm4: [testng] [2025-03-08 01:25:07,304] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0053.dm4: [testng] [2025-03-08 01:25:17,270] [pool-1-thread-9] Initializing /data/jayne/AM-2/MonGb2-S7.dm3: [testng] [2025-03-08 01:25:25,151] [pool-1-thread-5] Initializing /data/jay/recAmaghi.dm3: [testng] [2025-03-08 01:25:30,599] [pool-1-thread-6] Initializing /data/jayne/AM-2/MonGb2-S8.dm3: [testng] [2025-03-08 01:25:35,685] [pool-1-thread-4] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2025-03-08 01:26:03,934] [pool-1-thread-1] Initializing /data/ofra/Co on INT 28-12-10.11.dm3: [testng] [2025-03-08 01:26:07,704] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-363.dm3: [testng] [2025-03-08 01:26:41,273] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0048.dm4: [testng] [2025-03-08 01:26:48,456] [pool-1-thread-1] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-480x480.tif: [testng] [2025-03-08 01:27:19,994] [pool-1-thread-9] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-128x128.tif: [testng] [2025-03-08 01:27:47,111] [pool-1-thread-3] Initializing /data/jay/Carbon.34.dm3: [testng] [2025-03-08 01:27:50,963] [pool-1-thread-6] Initializing /data/nuno/Prefix_3VBSED_stack_30_slice_0290.dm3: [testng] [2025-03-08 01:27:54,711] [pool-1-thread-7] Initializing /data/qa-7642/8.dm4: [testng] [2025-03-08 01:27:59,130] [pool-1-thread-5] Initializing /data/public/imagesc-36590/SmallMontage0003.dm4: [testng] [2025-03-08 01:28:02,976] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0006.dm4: [testng] [2025-03-08 01:28:18,710] [pool-1-thread-12] Initializing /data/jay/dnasample.tif: [testng] [2025-03-08 01:28:51,610] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0003.dm4: [testng] [2025-03-08 01:28:58,532] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0005.dm4: [testng] [2025-03-08 01:29:21,038] [pool-1-thread-8] Initializing /data/jayne/AM-2/MonGb2-S9.dm3: [testng] [2025-03-08 01:29:43,489] [pool-1-thread-5] Initializing /data/sindhu/resampled/JC76-G1-80000.0V-15000X-Sindhu-362-256x256.tif: [testng] [2025-03-08 01:30:48,110] [pool-1-thread-7] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0046.dm4: [testng] [2025-03-08 01:30:56,236] [pool-1-thread-2] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0051.dm4: [testng] [2025-03-08 01:31:05,174] [pool-1-thread-3] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0049.dm4: [testng] [2025-03-08 01:31:13,495] [pool-1-thread-6] Initializing /data/jay/ViewDMtest.dm3: [testng] [2025-03-08 01:31:48,288] [pool-1-thread-10] Initializing /data/public/imagesc-36590/SmallMontage0004.dm4: [testng] [2025-03-08 01:31:54,533] [pool-1-thread-11] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.tif: [testng] [2025-03-08 01:33:07,546] [pool-1-thread-4] Initializing /data/jay/smallerfile.dm3: [testng] [2025-03-08 01:33:18,481] [pool-1-thread-1] Initializing /data/melissa/annotation-test.tif: [testng] [2025-03-08 01:34:29,535] [pool-1-thread-8] Initializing /data/jay/samples/APC2a-e5.tif: [testng] [2025-03-08 01:36:49,588] [pool-1-thread-9] Initializing /data/qa-8007/Prefix_3VBSED_slice_0011.dm3: [testng] [2025-03-08 01:37:02,052] [pool-1-thread-6] Initializing /data/jay/samples/APC2a-e3.tif: [testng] [2025-03-08 01:38:20,994] [pool-1-thread-10] Initializing /data/samples/test-tiles.dm3: [testng] [2025-03-08 01:38:31,039] [pool-1-thread-7] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0016.dm4: [testng] [2025-03-08 01:38:42,336] [pool-1-thread-2] Initializing /data/jay/samples/APC2a-e5.dm3: [testng] [2025-03-08 01:38:54,054] [pool-1-thread-3] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.dm3: [testng] [2025-03-08 01:39:43,036] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0010.dm4: [testng] [2025-03-08 01:39:55,241] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0011.dm4: [testng] [2025-03-08 01:40:05,842] [pool-1-thread-4] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0015.dm4: [testng] [2025-03-08 01:40:59,336] [pool-1-thread-10] Initializing /data/sindhu/cropped/JC76-G1-80000.0V-15000X-Sindhu-362-1020x1020.tif: [testng] [2025-03-08 01:42:18,717] [pool-1-thread-7] Initializing /data/jay/biosamplefullframe.dm3: [testng] [2025-03-08 01:42:24,774] [pool-1-thread-2] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0008.dm4: [testng] [2025-03-08 01:42:34,569] [pool-1-thread-3] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362.tif: [testng] [2025-03-08 01:43:42,469] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0007.dm4: [testng] [2025-03-08 01:44:09,988] [pool-1-thread-12] Initializing /data/imagesc-3719/Heart_BSE_slice_0019.dm4: [testng] [2025-03-08 01:44:28,851] [pool-1-thread-4] Initializing /data/public/imagesc-36590/SmallMontage0007.dm4: [testng] [2025-03-08 01:44:36,697] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0000.dm4: [testng] [2025-03-08 01:45:15,407] [pool-1-thread-2] Initializing /data/melissa/annotation-test.dm3: [testng] [2025-03-08 01:45:23,884] [pool-1-thread-7] Initializing /data/chip/Nanogold-1.dm3: [testng] [2025-03-08 01:45:33,237] [pool-1-thread-5] Initializing /data/qa-21647/Sample2_L1-0002.dm4: [testng] [2025-03-08 01:46:03,294] [pool-1-thread-12] Initializing /data/sindhu/JC76-G1-80000.0V-15000X-Sindhu-360.dm3: [testng] [2025-03-08 01:46:12,895] [pool-1-thread-1] Initializing /data/public/imagesc-36590/SmallMontage0006.dm4: [testng] [2025-03-08 01:46:20,217] [pool-1-thread-11] Initializing /data/qa-21761/example.dm4: [testng] [2025-03-08 01:46:28,405] [pool-1-thread-8] Initializing /data/public/imagesc-36590/SmallMontage0002.dm4: [testng] [2025-03-08 01:46:46,529] [pool-1-thread-9] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0012.dm4: [testng] [2025-03-08 01:46:52,076] [pool-1-thread-4] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2025-03-08 01:48:01,843] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0004.dm4: [testng] [2025-03-08 01:48:36,328] [pool-1-thread-2] Initializing /data/qa-21652/E coli phage H2O_100000.0V_67000X.dm4: [testng] [2025-03-08 01:48:48,365] [pool-1-thread-5] Initializing /data/jayne/AM-2/MonGb3-S3.dm3: [testng] [2025-03-08 01:49:08,577] [pool-1-thread-7] Initializing /data/sindhu/8bit/JC76-G1-80000.0V-15000X-Sindhu-362-smaller.tif: [testng] [2025-03-08 01:50:56,325] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0005.dm4: [testng] [2025-03-08 01:51:05,812] [pool-1-thread-1] Initializing /data/jay/samples/APC2a-e4.dm3: [testng] [2025-03-08 01:51:19,025] [pool-1-thread-11] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0018.dm4: [testng] [2025-03-08 01:51:27,780] [pool-1-thread-8] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0019.dm4: [testng] [2025-03-08 01:52:24,856] [pool-1-thread-9] Initializing /data/jay/DMtest.dm3: [testng] [2025-03-08 01:52:38,281] [pool-1-thread-6] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0017.dm4: [testng] [2025-03-08 01:52:50,767] [pool-1-thread-10] Initializing /data/jay/DMtest2.dm3: [testng] [2025-03-08 01:53:00,087] [pool-1-thread-3] Initializing /data/jayne/AM-2/MonGb3-S1.dm3: [testng] [2025-03-08 01:53:12,431] [pool-1-thread-2] Initializing /data/sindhu/JC76-G1-80000.0V-26000X-Sindhu-364.tif: [testng] [2025-03-08 01:54:40,795] [pool-1-thread-5] Initializing /data/qa-11392/Example_Gatan_File.dm4: [testng] [2025-03-08 01:55:37,886] [pool-1-thread-1] Initializing /data/jay/biosamplefullframetif.tif: [testng] [2025-03-08 01:56:52,449] [pool-1-thread-12] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0014.dm4: [testng] [2025-03-08 01:57:03,718] [pool-1-thread-8] Initializing /data/public/imagesc-36590/191041a_ctl_M2_3VBSED_0050.dm4: [testng] [2025-03-08 01:57:15,411] [pool-1-thread-11] Initializing /data/jay/graphitedm3.dm3: [testng] [2025-03-08 01:58:22,435] [pool-1-thread-6] Initializing /data/public/imagesc-36590/SmallMontage0008.dm4: [testng] [2025-03-08 01:58:38,880] [pool-1-thread-5] Initializing /data/jean-marc/5nm pixels 50nm cuts/5nm -- BSED - slice 0001.dm4: [testng] [2025-03-08 01:58:51,040] [pool-1-thread-10] Initializing /data/public/EMPIAR/EMPIAR-10013/BGal_000438_frames.dm4: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 5194, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 106 minutes 48 seconds Finished: SUCCESS