Started by upstream project "BIOFORMATS-test-repo" build number 368
originally caused by:
Started by upstream project "Trigger" build number 394
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins1424579915825134406.sh
+ '[' bmp = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58630_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 06:23:29,175 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 06:23:29,176 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service.
[testng] 06:23:29,176 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:23:29,177 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:23:29,178 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:23:29,178 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:23:29,178 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:23:29,178 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:23:29,179 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:23:29,180 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:23:29,180 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:23:29,180 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:23:29,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:23:29,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:23:29,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:23:29,369 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:23:29,374 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:23:29,374 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:23:29,374 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:23:29,375 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:23:29,375 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration.
[testng] 06:23:29,375 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point
[testng] 06:23:29,376 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 197 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-08 06:23:29,384] [main] java.version = 11.0.16
[testng] 06:23:29,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:23:29,387 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:23:29,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-08_06-23-29.log]
[testng] 06:23:29,429 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration.
[testng] [2025-03-08 06:23:29,432] [main] testng.directory = /data
[testng] [2025-03-08 06:23:29,432] [main] testng.configDirectory = /config
[testng] [2025-03-08 06:23:29,441] [main] testng.multiplier = 1.0
[testng] [2025-03-08 06:23:29,442] [main] testng.in-memory = false
[testng] [2025-03-08 06:23:29,442] [main] testng.allow-missing = false
[testng] [2025-03-08 06:23:29,442] [main] user.language = en
[testng] [2025-03-08 06:23:29,442] [main] user.country = ${user.country}
[testng] [2025-03-08 06:23:29,442] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-08 06:23:31,941] [main] ----------------------------------------
[testng] [2025-03-08 06:23:31,941] [main] Total files: 31
[testng] [2025-03-08 06:23:31,941] [main] Scan time: 2.498 s (80 ms/file)
[testng] [2025-03-08 06:23:31,941] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 31 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-08 06:33:15,192] [pool-1-thread-1] Initializing /data/brian/images/raw_a_rg.bmp:
[testng] 06:33:15,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:33:15,193 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:33:15,195 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-08_06-33-15.log]
[testng] 06:33:15,196 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e3c0412 - End of configuration.
[testng] [2025-03-08 06:33:23,530] [pool-1-thread-12] Initializing /data/stephane/holo0908.bmp:
[testng] 06:33:23,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:33:23,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:33:23,532 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-08_06-33-23.log]
[testng] 06:33:23,532 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64ee525e - End of configuration.
[testng] [2025-03-08 06:33:28,073] [pool-1-thread-11] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp:
[testng] 06:33:28,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:33:28,073 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:33:28,074 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-08_06-33-28.log]
[testng] 06:33:28,074 |-INFO in ch.qos.logback.core.sift.SiftProcessor@473fe167 - End of configuration.
[testng] [2025-03-08 06:33:39,674] [pool-1-thread-10] Initializing /data/big-images/8kx8k-grey.bmp:
[testng] 06:33:39,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:33:39,675 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:33:39,675 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-08_06-33-39.log]
[testng] 06:33:39,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75d92581 - End of configuration.
[testng] [2025-03-08 06:33:50,784] [pool-1-thread-9] Initializing /data/frank/cell_mask_error.bmp:
[testng] 06:33:50,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:33:50,785 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:33:50,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-08_06-33-50.log]
[testng] 06:33:50,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62396472 - End of configuration.
[testng] [2025-03-08 06:34:02,976] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_One.bmp:
[testng] 06:34:02,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:34:02,977 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:34:02,977 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-08_06-34-02.log]
[testng] 06:34:02,978 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eaed20 - End of configuration.
[testng] [2025-03-08 06:34:14,992] [pool-1-thread-7] Initializing /data/brian/images/raw_a.bmp:
[testng] 06:34:14,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:34:14,992 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:34:14,993 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-08_06-34-14.log]
[testng] 06:34:14,993 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46bbdd71 - End of configuration.
[testng] [2025-03-08 06:34:26,940] [pool-1-thread-6] Initializing /data/bk/ch_00.bmp:
[testng] 06:34:26,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:34:26,940 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:34:26,941 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-08_06-34-26.log]
[testng] 06:34:26,941 |-INFO in ch.qos.logback.core.sift.SiftProcessor@96a38ef - End of configuration.
[testng] [2025-03-08 06:34:38,172] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Seven.bmp:
[testng] 06:34:38,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:34:38,172 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:34:38,173 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-08_06-34-38.log]
[testng] 06:34:38,173 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53b54999 - End of configuration.
[testng] [2025-03-08 06:34:50,097] [pool-1-thread-4] Initializing /data/brian/images/raw_a_rg.tiff:
[testng] 06:34:50,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:34:50,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:34:50,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-08_06-34-50.log]
[testng] 06:34:50,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@48896159 - End of configuration.
[testng] [2025-03-08 06:36:51,952] [pool-1-thread-3] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp:
[testng] 06:36:51,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:36:51,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:36:51,953 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-08_06-36-51.log]
[testng] 06:36:51,953 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6aad6f3f - End of configuration.
[testng] [2025-03-08 06:37:03,126] [pool-1-thread-2] Initializing /data/curtis/image5.bmp:
[testng] 06:37:03,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:37:03,126 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:37:03,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-08_06-37-03.log]
[testng] 06:37:03,127 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c74810c - End of configuration.
[testng] [2025-03-08 06:39:22,403] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Four.bmp:
[testng] [2025-03-08 06:39:34,237] [pool-1-thread-11] Initializing /data/brian/images/kidney_TFl_1.bmp:
[testng] [2025-03-08 06:39:45,656] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Five.bmp:
[testng] [2025-03-08 06:39:58,592] [pool-1-thread-6] Initializing /data/curtis/image2.bmp:
[testng] [2025-03-08 06:40:11,262] [pool-1-thread-1] Initializing /data/curtis/image4.bmp:
[testng] [2025-03-08 06:40:23,054] [pool-1-thread-2] Initializing /data/dennis/kidney_TFl_Three.bmp:
[testng] [2025-03-08 06:40:35,678] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_Nine.bmp:
[testng] [2025-03-08 06:40:48,330] [pool-1-thread-9] Initializing /data/ticket-12971/foo.bmp:
[testng] [2025-03-08 06:40:53,859] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Two.bmp:
[testng] [2025-03-08 06:40:59,138] [pool-1-thread-5] Initializing /data/dennis/kidney_TFl_Six.bmp:
[testng] [2025-03-08 06:41:06,300] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Eight.bmp:
[testng] [2025-03-08 06:43:33,627] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp:
[testng] [2025-03-08 06:43:48,483] [pool-1-thread-11] Initializing /data/curtis/image3.bmp:
[testng] [2025-03-08 06:43:53,473] [pool-1-thread-7] Initializing /data/big-images/8kx8k.bmp:
[testng] [2025-03-08 06:43:58,454] [pool-1-thread-8] Initializing /data/brian/images/DMSOHigh_001.bmp:
[testng] [2025-03-08 06:44:08,912] [pool-1-thread-3] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp:
[testng] [2025-03-08 06:44:21,070] [pool-1-thread-2] Initializing /data/big-images/6kx6k-grey.bmp:
[testng] [2025-03-08 06:44:34,167] [pool-1-thread-1] Initializing /data/curtis/image1.bmp:
[testng] [2025-03-08 06:44:48,481] [pool-1-thread-6] Initializing /data/brian/images/23srp5dksub.bmp:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1643, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 27 minutes 21 seconds
Finished: SUCCESS