Started by upstream project "BIOFORMATS-test-repo" build number 369
originally caused by:
Started by upstream project "Trigger" build number 395
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@10
[BIOFORMATS-test-folder@10] $ /bin/bash -xe /tmp/jenkins14571034239045085211.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_58856_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 21:45:52,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 21:45:52,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
[testng] 21:45:52,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 21:45:52,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 21:45:52,677 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 21:45:52,677 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 21:45:52,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 21:45:52,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 21:45:52,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 21:45:52,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 21:45:52,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 21:45:52,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 21:45:52,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 21:45:52,892 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 21:45:52,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 21:45:52,913 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 21:45:52,928 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 21:45:52,928 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 21:45:52,928 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 21:45:52,929 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 21:45:52,929 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
[testng] 21:45:52,930 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
[testng] 21:45:52,930 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 252 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-09 21:45:52,938] [main] java.version = 17.0.2
[testng] 21:45:52,941 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 21:45:52,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:45:53,058 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-09_21-45-52.log]
[testng] 21:45:53,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
[testng] [2025-03-09 21:45:53,068] [main] testng.directory = /data
[testng] [2025-03-09 21:45:53,069] [main] testng.configDirectory = /config
[testng] [2025-03-09 21:45:53,118] [main] testng.multiplier = 1.0
[testng] [2025-03-09 21:45:53,119] [main] testng.in-memory = false
[testng] [2025-03-09 21:45:53,119] [main] testng.allow-missing = false
[testng] [2025-03-09 21:45:53,119] [main] user.language = en
[testng] [2025-03-09 21:45:53,119] [main] user.country = ${user.country}
[testng] [2025-03-09 21:45:53,119] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-09 21:46:06,518] [main] ----------------------------------------
[testng] [2025-03-09 21:46:06,518] [main] Total files: 40
[testng] [2025-03-09 21:46:06,518] [main] Scan time: 13.399 s (334 ms/file)
[testng] [2025-03-09 21:46:06,518] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 38 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-09 21:47:52,378] [pool-1-thread-1] Initializing /data/sample-avis/extra-chunk/HyperStack.avi:
[testng] 21:47:52,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 21:47:52,379 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:47:52,380 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-09_21-47-52.log]
[testng] 21:47:52,380 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e42ade6 - End of configuration.
[testng] [2025-03-09 21:47:54,654] [pool-1-thread-12] Initializing /data/curtis/mri-stack-ij-old.avi:
[testng] 21:47:54,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 21:47:54,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:47:54,655 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-09_21-47-54.log]
[testng] 21:47:54,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@19fe2ba - End of configuration.
[testng] [2025-03-09 21:47:56,303] [pool-1-thread-11] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi:
[testng] 21:47:56,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 21:47:56,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:47:56,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-09_21-47-56.log]
[testng] 21:47:56,305 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60d71e8f - End of configuration.
[testng] [2025-03-09 21:47:58,009] [pool-1-thread-10] Initializing /data/qa-11011/M-flow10001.avi:
[testng] 21:47:58,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 21:47:58,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:47:58,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-09_21-47-58.log]
[testng] 21:47:58,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642c1ef4 - End of configuration.
[testng] [2025-03-09 21:47:59,747] [pool-1-thread-9] Initializing /data/curtis/mri-stack-ij-new.avi:
[testng] 21:47:59,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 21:47:59,747 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:47:59,748 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-09_21-47-59.log]
[testng] 21:47:59,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4463a217 - End of configuration.
[testng] [2025-03-09 21:48:01,686] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 3.avi:
[testng] 21:48:01,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 21:48:01,686 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:48:01,687 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-09_21-48-01.log]
[testng] 21:48:01,687 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dee6701 - End of configuration.
[testng] [2025-03-09 21:48:03,214] [pool-1-thread-7] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi:
[testng] 21:48:03,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 21:48:03,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:48:03,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-09_21-48-03.log]
[testng] 21:48:03,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1fbe49d0 - End of configuration.
[testng] [2025-03-09 21:48:05,623] [pool-1-thread-6] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi:
[testng] 21:48:05,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 21:48:05,624 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:48:05,624 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-09_21-48-05.log]
[testng] 21:48:05,625 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ed16471 - End of configuration.
[testng] [2025-03-09 21:48:07,254] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 4.avi:
[testng] 21:48:07,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 21:48:07,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:48:07,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-09_21-48-07.log]
[testng] 21:48:07,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@432e08f5 - End of configuration.
[testng] [2025-03-09 21:48:22,924] [pool-1-thread-4] Initializing /data/prairie/cornea dc and macs.AVI:
[testng] 21:48:22,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 21:48:22,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:48:22,924 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-09_21-48-22.log]
[testng] 21:48:22,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@613026f1 - End of configuration.
[testng] [2025-03-09 21:48:32,475] [pool-1-thread-3] Initializing /data/chip_avi/Level002-DB-090.avi:
[testng] 21:48:32,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 21:48:32,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:48:32,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-09_21-48-32.log]
[testng] 21:48:32,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@190e263b - End of configuration.
[testng] [2025-03-09 21:48:41,713] [pool-1-thread-2] Initializing /data/chip_avi/Level001-ES-083.avi:
[testng] 21:48:41,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 21:48:41,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 21:48:41,714 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-09_21-48-41.log]
[testng] 21:48:41,714 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ff92f9f - End of configuration.
[testng] [2025-03-09 21:50:06,355] [pool-1-thread-6] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi:
[testng] [2025-03-09 21:50:11,072] [pool-1-thread-10] Initializing /data/roger/spheroid1.lsm movie.avi:
[testng] [2025-03-09 21:50:21,721] [pool-1-thread-1] Initializing /data/kurt/40x_6um_2.avi:
[testng] [2025-03-09 21:50:32,536] [pool-1-thread-3] Initializing /data/qa-7450/MVI_3610.AVI:
[testng] [2025-03-09 21:50:42,425] [pool-1-thread-12] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi:
[testng] [2025-03-09 21:50:56,718] [pool-1-thread-2] Initializing /data/chip_avi/Level004-WA-116.avi:
[testng] [2025-03-09 21:51:20,245] [pool-1-thread-9] Initializing /data/roger/op9middle40x.lsm movie 2.avi:
[testng] [2025-03-09 21:51:31,141] [pool-1-thread-7] Initializing /data/curtis/mri-stack-bf.avi:
[testng] [2025-03-09 21:51:42,613] [pool-1-thread-11] Initializing /data/simon/24_bit_problem.avi:
[testng] [2025-03-09 21:51:54,004] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_1_.avi:
[testng] [2025-03-09 21:52:05,529] [pool-1-thread-8] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi:
[testng] [2025-03-09 21:52:18,918] [pool-1-thread-4] Initializing /data/kurt/63x_6um.avi:
[testng] [2025-03-09 21:52:31,195] [pool-1-thread-6] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi:
[testng] [2025-03-09 21:52:31,967] [pool-1-thread-2] Initializing /data/jae/20xD_5minfor14h.avi:
[testng] [2025-03-09 21:52:32,996] [pool-1-thread-7] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi:
[testng] [2025-03-09 21:52:34,126] [pool-1-thread-4] Initializing /data/chris/APZ04_009.avi:
[testng] [2025-03-09 21:52:36,352] [pool-1-thread-3] Initializing /data/ascb/TIRF.avi:
[testng] [2025-03-09 21:52:38,030] [pool-1-thread-11] Initializing /data/roger/spheroid1-crop.lsm movie.avi:
[testng] [2025-03-09 21:52:40,677] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi:
[testng] [2025-03-09 21:52:42,694] [pool-1-thread-12] Initializing /data/william/worm.avi:
[testng] [2025-03-09 21:52:44,618] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_10_20.avi:
[testng] [2025-03-09 21:52:47,878] [pool-1-thread-1] Initializing /data/kurt/40x_6um.avi:
[testng] [2025-03-09 21:52:48,751] [pool-1-thread-9] Initializing /data/chip_avi/Level003-DB-089.avi:
[testng] [2025-03-09 21:52:55,584] [pool-1-thread-10] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi:
[testng] [2025-03-09 21:52:56,651] [pool-1-thread-6] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi:
[testng] [2025-03-09 21:52:57,714] [pool-1-thread-3] Initializing /data/roger/op9middle40x.lsm movie.avi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 2014, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 7 minutes 16 seconds
Finished: SUCCESS