Started by upstream project "BIOFORMATS-test-repo" build number 42
originally caused by:
Started by upstream project "Trigger" build number 49
originally caused by:
Started by user devspace
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins13503374951266672522.sh
+ '[' lim = slidebook ']'
++ date +%u
+ '[' 2 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_5891_merge_ci -v /uod/idr/repos/curated/lim:/data -v /uod/idr-scratch/merge-ci/curated/lim:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] WARNING: An illegal reflective access operation has occurred
[testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
[testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
[testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
[testng] WARNING: All illegal access operations will be denied in a future release
[testng] File leak detector installed
[testng] 06:08:53,747 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 06:08:53,749 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
[testng] 06:08:53,749 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:08:53,750 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:08:53,751 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:08:53,751 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:08:53,752 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:08:53,752 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:08:53,752 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:08:53,753 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:08:53,754 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:08:53,754 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:08:53,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:08:53,946 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:08:53,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:08:53,970 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:08:53,976 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:08:53,976 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:08:53,976 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:08:53,977 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:08:53,977 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
[testng] 06:08:53,978 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
[testng] 06:08:53,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 226 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-23 06:08:53,987] [main] java.version = 11.0.16
[testng] 06:08:53,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:08:53,990 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:54,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-23_06-08-54.log]
[testng] 06:08:54,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
[testng] [2024-04-23 06:08:54,040] [main] testng.directory = /data
[testng] [2024-04-23 06:08:54,040] [main] testng.configDirectory = /config
[testng] [2024-04-23 06:08:54,050] [main] testng.multiplier = 1.0
[testng] [2024-04-23 06:08:54,052] [main] testng.in-memory = false
[testng] [2024-04-23 06:08:54,052] [main] testng.allow-missing = false
[testng] [2024-04-23 06:08:54,052] [main] user.language = en
[testng] [2024-04-23 06:08:54,052] [main] user.country = ${user.country}
[testng] [2024-04-23 06:08:54,052] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-23 06:08:54,475] [main] ----------------------------------------
[testng] [2024-04-23 06:08:54,475] [main] Total files: 21
[testng] [2024-04-23 06:08:54,475] [main] Scan time: 0.423 s (20 ms/file)
[testng] [2024-04-23 06:08:54,475] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-23 06:08:55,760] [pool-1-thread-1] Initializing /data/venu/Kontrolle0010.lim:
[testng] 06:08:55,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:08:55,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:55,765 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-23_06-08-55.log]
[testng] 06:08:55,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5514cf53 - End of configuration.
[testng] [2024-04-23 06:08:55,830] [pool-1-thread-12] Initializing /data/venu/Kontrolle0018.lim:
[testng] 06:08:55,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:08:55,830 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:55,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-23_06-08-55.log]
[testng] 06:08:55,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2f5b265 - End of configuration.
[testng] [2024-04-23 06:08:55,851] [pool-1-thread-11] Initializing /data/venu/Kontrolle0008.lim:
[testng] 06:08:55,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:08:55,852 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:55,853 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-23_06-08-55.log]
[testng] 06:08:55,853 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ee52cad - End of configuration.
[testng] [2024-04-23 06:08:55,876] [pool-1-thread-10] Initializing /data/venu/Kontrolle0021.lim:
[testng] 06:08:55,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:08:55,877 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:55,878 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-23_06-08-55.log]
[testng] 06:08:55,878 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4473bc6e - End of configuration.
[testng] [2024-04-23 06:08:55,897] [pool-1-thread-9] Initializing /data/venu/Kontrolle0007.lim:
[testng] 06:08:55,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:08:55,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:55,898 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-23_06-08-55.log]
[testng] 06:08:55,898 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5457b557 - End of configuration.
[testng] [2024-04-23 06:08:55,915] [pool-1-thread-8] Initializing /data/venu/Kontrolle0005.lim:
[testng] 06:08:55,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:08:55,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:55,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-23_06-08-55.log]
[testng] 06:08:55,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7909a2d1 - End of configuration.
[testng] [2024-04-23 06:08:55,933] [pool-1-thread-7] Initializing /data/venu/Kontrolle0016.lim:
[testng] 06:08:55,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:08:55,934 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:55,935 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-23_06-08-55.log]
[testng] 06:08:55,935 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67752198 - End of configuration.
[testng] [2024-04-23 06:08:55,955] [pool-1-thread-6] Initializing /data/venu/Kontrolle0004.lim:
[testng] 06:08:55,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:08:55,955 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:55,956 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-23_06-08-55.log]
[testng] 06:08:55,957 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cda5600 - End of configuration.
[testng] [2024-04-23 06:08:55,975] [pool-1-thread-5] Initializing /data/venu/Kontrolle0002.lim:
[testng] 06:08:55,975 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:08:55,976 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:55,976 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-23_06-08-55.log]
[testng] 06:08:55,977 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11b329a9 - End of configuration.
[testng] [2024-04-23 06:08:55,999] [pool-1-thread-4] Initializing /data/venu/Kontrolle0015.lim:
[testng] 06:08:55,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:08:55,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:56,000 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-23_06-08-56.log]
[testng] 06:08:56,001 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5c1820e7 - End of configuration.
[testng] [2024-04-23 06:08:56,024] [pool-1-thread-3] Initializing /data/venu/Kontrolle0014.lim:
[testng] 06:08:56,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:08:56,024 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:56,026 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-23_06-08-56.log]
[testng] 06:08:56,027 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46422171 - End of configuration.
[testng] [2024-04-23 06:08:56,058] [pool-1-thread-2] Initializing /data/venu/Kontrolle0020.lim:
[testng] 06:08:56,058 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:08:56,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:08:56,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-23_06-08-56.log]
[testng] 06:08:56,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2be42659 - End of configuration.
[testng] [2024-04-23 06:08:58,569] [pool-1-thread-1] Initializing /data/venu/Kontrolle0012.lim:
[testng] [2024-04-23 06:08:58,587] [pool-1-thread-4] Initializing /data/venu/Kontrolle0019.lim:
[testng] [2024-04-23 06:08:58,602] [pool-1-thread-5] Initializing /data/venu/Kontrolle0001.lim:
[testng] [2024-04-23 06:08:58,614] [pool-1-thread-3] Initializing /data/venu/Kontrolle0013.lim:
[testng] [2024-04-23 06:08:58,630] [pool-1-thread-9] Initializing /data/venu/Kontrolle0009.lim:
[testng] [2024-04-23 06:08:58,646] [pool-1-thread-11] Initializing /data/venu/Kontrolle0017.lim:
[testng] [2024-04-23 06:08:58,660] [pool-1-thread-2] Initializing /data/venu/Kontrolle0003.lim:
[testng] [2024-04-23 06:08:58,674] [pool-1-thread-8] Initializing /data/venu/Kontrolle0011.lim:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 9 seconds
Finished: SUCCESS