Started by upstream project "BIOFORMATS-test-repo" build number 376
originally caused by:
Started by upstream project "Trigger" build number 399
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins475696230453009724.sh
+ '[' fei = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_59496_merge_ci -v /uod/idr/repos/curated/fei:/data -v /uod/idr-scratch/merge-ci/curated/fei:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 00:32:12,471 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 00:32:12,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service.
[testng] 00:32:12,473 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:32:12,474 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:32:12,474 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:32:12,475 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:32:12,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:32:12,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:32:12,475 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:32:12,476 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:32:12,476 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:32:12,476 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:32:12,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:32:12,626 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:32:12,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:32:12,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:32:12,656 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:32:12,657 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:32:12,657 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:32:12,657 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:32:12,657 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@47d9a273 - End of configuration.
[testng] 00:32:12,658 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4659191b - Registering current configuration as safe fallback point
[testng] 00:32:12,658 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-13 00:32:12,667] [main] java.version = 21
[testng] 00:32:12,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:32:12,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:12,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-13_00-32-12.log]
[testng] 00:32:12,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration.
[testng] [2025-03-13 00:32:12,713] [main] testng.directory = /data
[testng] [2025-03-13 00:32:12,713] [main] testng.configDirectory = /config
[testng] [2025-03-13 00:32:12,725] [main] testng.multiplier = 1.0
[testng] [2025-03-13 00:32:12,726] [main] testng.in-memory = false
[testng] [2025-03-13 00:32:12,726] [main] testng.allow-missing = false
[testng] [2025-03-13 00:32:12,726] [main] user.language = en
[testng] [2025-03-13 00:32:12,726] [main] user.country = ${user.country}
[testng] [2025-03-13 00:32:12,726] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-13 00:32:20,047] [main] ----------------------------------------
[testng] [2025-03-13 00:32:20,047] [main] Total files: 21
[testng] [2025-03-13 00:32:20,047] [main] Scan time: 7.321 s (348 ms/file)
[testng] [2025-03-13 00:32:20,047] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-13 00:32:44,451] [pool-1-thread-1] Initializing /data/steffen/Batman_008.tif:
[testng] 00:32:44,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:32:44,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:44,453 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-13_00-32-44.log]
[testng] 00:32:44,453 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa095c9 - End of configuration.
[testng] [2025-03-13 00:32:45,665] [pool-1-thread-12] Initializing /data/venu/VENU02.IMG:
[testng] 00:32:45,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:32:45,666 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:45,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-13_00-32-45.log]
[testng] 00:32:45,667 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e52b124 - End of configuration.
[testng] [2025-03-13 00:32:46,085] [pool-1-thread-11] Initializing /data/qa-11061/Tile_020-009-000_0.tif:
[testng] 00:32:46,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:32:46,086 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:46,086 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-13_00-32-46.log]
[testng] 00:32:46,087 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3693133 - End of configuration.
[testng] [2025-03-13 00:32:47,364] [pool-1-thread-10] Initializing /data/peter/ZC_PTCS_ED_1000x_002.tif:
[testng] 00:32:47,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:32:47,365 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:47,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-13_00-32-47.log]
[testng] 00:32:47,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@391802cd - End of configuration.
[testng] [2025-03-13 00:32:48,563] [pool-1-thread-9] Initializing /data/qa-10514/TITAN_FEI_TIFF_Test_Image.tif:
[testng] 00:32:48,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:32:48,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:48,564 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-13_00-32-48.log]
[testng] 00:32:48,565 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60ca782f - End of configuration.
[testng] [2025-03-13 00:32:49,661] [pool-1-thread-8] Initializing /data/venu/VENU01.IMG:
[testng] 00:32:49,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:32:49,661 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:49,662 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-13_00-32-49.log]
[testng] 00:32:49,662 |-INFO in ch.qos.logback.core.sift.SiftProcessor@198d958e - End of configuration.
[testng] [2025-03-13 00:32:50,049] [pool-1-thread-7] Initializing /data/antoine/Tile_001-002-000_0-000.tif:
[testng] 00:32:50,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:32:50,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:50,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-13_00-32-50.log]
[testng] 00:32:50,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17e0d82b - End of configuration.
[testng] [2025-03-13 00:32:51,287] [pool-1-thread-6] Initializing /data/venu/VENU02.TIF:
[testng] 00:32:51,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:32:51,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:51,288 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-13_00-32-51.log]
[testng] 00:32:51,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3213e448 - End of configuration.
[testng] [2025-03-13 00:32:52,485] [pool-1-thread-5] Initializing /data/venu/VENU_Five.TIF:
[testng] 00:32:52,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:32:52,486 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:52,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-13_00-32-52.log]
[testng] 00:32:52,487 |-INFO in ch.qos.logback.core.sift.SiftProcessor@680b144f - End of configuration.
[testng] [2025-03-13 00:32:53,638] [pool-1-thread-4] Initializing /data/venu/VENU01.TIF:
[testng] 00:32:53,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:32:53,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:53,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-13_00-32-53.log]
[testng] 00:32:53,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c93012f - End of configuration.
[testng] [2025-03-13 00:32:54,807] [pool-1-thread-3] Initializing /data/venu/VENU_Six.TIF:
[testng] 00:32:54,807 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:32:54,808 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:54,808 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-13_00-32-54.log]
[testng] 00:32:54,809 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17e5c386 - End of configuration.
[testng] [2025-03-13 00:32:56,136] [pool-1-thread-2] Initializing /data/venu/VENU_Four.TIF:
[testng] 00:32:56,136 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:32:56,137 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:56,137 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-13_00-32-56.log]
[testng] 00:32:56,138 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b8cdf3a - End of configuration.
[testng] [2025-03-13 00:33:02,273] [pool-1-thread-8] Initializing /data/venu/VENU03.TIF:
[testng] [2025-03-13 00:33:03,546] [pool-1-thread-12] Initializing /data/venu/VENU_Seven.TIF:
[testng] [2025-03-13 00:33:08,716] [pool-1-thread-9] Initializing /data/venu/VENU03.IMG:
[testng] [2025-03-13 00:33:09,149] [pool-1-thread-3] Initializing /data/venu/VENU_Eight.TIF:
[testng] [2025-03-13 00:33:10,396] [pool-1-thread-1] Initializing /data/qa-4264/08.51.17 CCD Acquire-Acquire CCD Image Display-Acquire CCD -0.tif:
[testng] [2025-03-13 00:33:11,553] [pool-1-thread-5] Initializing /data/venu/VENU.TIF:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 9 seconds
Finished: SUCCESS