Started by upstream project "BIOFORMATS-test-repo" build number 376
originally caused by:
Started by upstream project "Trigger" build number 399
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins4001916833595633168.sh
+ '[' minc = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_59540_merge_ci -v /uod/idr/repos/curated/minc:/data -v /uod/idr-scratch/merge-ci/curated/minc:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:57:29,487 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 01:57:29,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service.
[testng] 01:57:29,488 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:57:29,489 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:57:29,489 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:57:29,490 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:57:29,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:57:29,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:57:29,490 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:57:29,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:57:29,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:57:29,491 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:57:29,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:57:29,637 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:57:29,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:57:29,659 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:57:29,665 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:57:29,665 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:57:29,665 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:57:29,665 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:57:29,665 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration.
[testng] 01:57:29,666 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point
[testng] 01:57:29,666 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 176 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-13 01:57:29,675] [main] java.version = 21
[testng] 01:57:29,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:57:29,677 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:29,719 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-13_01-57-29.log]
[testng] 01:57:29,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration.
[testng] [2025-03-13 01:57:29,723] [main] testng.directory = /data
[testng] [2025-03-13 01:57:29,723] [main] testng.configDirectory = /config
[testng] [2025-03-13 01:57:29,731] [main] testng.multiplier = 1.0
[testng] [2025-03-13 01:57:29,732] [main] testng.in-memory = false
[testng] [2025-03-13 01:57:29,732] [main] testng.allow-missing = false
[testng] [2025-03-13 01:57:29,732] [main] user.language = en
[testng] [2025-03-13 01:57:29,732] [main] user.country = ${user.country}
[testng] [2025-03-13 01:57:29,732] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-03-13 01:57:30,980] [main] ----------------------------------------
[testng] [2025-03-13 01:57:30,980] [main] Total files: 15
[testng] [2025-03-13 01:57:30,980] [main] Scan time: 1.248 s (83 ms/file)
[testng] [2025-03-13 01:57:30,981] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-13 01:57:47,366] [pool-1-thread-1] Initializing /data/samples/ICBM/icbm_template_4.00mm.mnc:
[testng] 01:57:47,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:57:47,367 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:47,368 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-13_01-57-47.log]
[testng] 01:57:47,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@107c1489 - End of configuration.
[testng] [2025-03-13 01:57:48,120] [pool-1-thread-12] Initializing /data/bigbrain/pm6479o.mnc:
[testng] 01:57:48,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:57:48,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:48,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-13_01-57-48.log]
[testng] 01:57:48,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59cfd96e - End of configuration.
[testng] [2025-03-13 01:57:49,196] [pool-1-thread-11] Initializing /data/samples/ICBM/icbm_template_one.00mm.mnc:
[testng] 01:57:49,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:57:49,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:49,198 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-13_01-57-49.log]
[testng] 01:57:49,198 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3aade661 - End of configuration.
[testng] [2025-03-13 01:57:49,855] [pool-1-thread-10] Initializing /data/samples/ICBM/icbm_atlas_cerebellum_avg_53_mask_1mm.mnc:
[testng] 01:57:49,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:57:49,855 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:49,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-13_01-57-49.log]
[testng] 01:57:49,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@442eaed1 - End of configuration.
[testng] [2025-03-13 01:57:50,518] [pool-1-thread-9] Initializing /data/samples/ICBM/icbm_template_2.00mm.mnc:
[testng] 01:57:50,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:57:50,518 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:50,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-13_01-57-50.log]
[testng] 01:57:50,519 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120795c9 - End of configuration.
[testng] [2025-03-13 01:57:51,301] [pool-1-thread-8] Initializing /data/bigbrain/full16_400um_2009b_sym.mnc:
[testng] 01:57:51,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:57:51,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:51,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-13_01-57-51.log]
[testng] 01:57:51,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4a2a266b - End of configuration.
[testng] [2025-03-13 01:57:53,716] [pool-1-thread-7] Initializing /data/daren/test_32bit_float.mnc:
[testng] 01:57:53,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:57:53,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:53,717 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-13_01-57-53.log]
[testng] 01:57:53,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@604d5ca9 - End of configuration.
[testng] [2025-03-13 01:57:54,591] [pool-1-thread-6] Initializing /data/bigbrain/8-bit_full_400um_2009b_sym.mnc:
[testng] 01:57:54,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:57:54,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:54,592 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-13_01-57-54.log]
[testng] 01:57:54,593 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b56f1ea - End of configuration.
[testng] [2025-03-13 01:57:55,965] [pool-1-thread-5] Initializing /data/samples/ICBM/icbm_template_one.50mm.mnc:
[testng] 01:57:55,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:57:55,966 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:55,967 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-13_01-57-55.log]
[testng] 01:57:55,967 |-INFO in ch.qos.logback.core.sift.SiftProcessor@120bce1f - End of configuration.
[testng] [2025-03-13 01:57:56,669] [pool-1-thread-4] Initializing /data/samples/ICBM/icbm_template_zero.50mm.mnc:
[testng] 01:57:56,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:57:56,669 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:56,670 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-13_01-57-56.log]
[testng] 01:57:56,670 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6db7ac6a - End of configuration.
[testng] [2025-03-13 01:57:57,402] [pool-1-thread-3] Initializing /data/qa-17215/IBSR01.mnc:
[testng] 01:57:57,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:57:57,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:57,403 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-13_01-57-57.log]
[testng] 01:57:57,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43f54a69 - End of configuration.
[testng] [2025-03-13 01:57:58,102] [pool-1-thread-2] Initializing /data/samples/ICBM/icbm_template_zero.75mm.mnc:
[testng] 01:57:58,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:57:58,102 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:57:58,103 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-13_01-57-58.log]
[testng] 01:57:58,103 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a7260bc - End of configuration.
BUILD SUCCESSFUL
Total time: 50 seconds
Finished: SUCCESS