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Started by upstream project "BIOFORMATS-test-repo" build number 376 originally caused by: Started by upstream project "Trigger" build number 399 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins14763249144925996754.sh + '[' psd = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59601_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:23:07,941 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:23:07,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 05:23:07,942 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:23:07,943 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:23:07,943 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:23:07,944 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:23:07,944 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:23:07,944 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:23:07,944 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:23:07,945 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:23:07,945 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:23:07,945 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:23:08,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:23:08,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:23:08,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:23:08,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:23:08,131 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:23:08,131 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:23:08,131 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:23:08,132 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:23:08,132 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@47d9a273 - End of configuration. [testng] 05:23:08,132 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4659191b - Registering current configuration as safe fallback point [testng] 05:23:08,132 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-13 05:23:08,141] [main] java.version = 21 [testng] 05:23:08,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:23:08,144 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:08,184 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-13_05-23-08.log] [testng] 05:23:08,185 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-13 05:23:08,187] [main] testng.directory = /data [testng] [2025-03-13 05:23:08,187] [main] testng.configDirectory = /config [testng] [2025-03-13 05:23:08,195] [main] testng.multiplier = 1.0 [testng] [2025-03-13 05:23:08,196] [main] testng.in-memory = false [testng] [2025-03-13 05:23:08,196] [main] testng.allow-missing = false [testng] [2025-03-13 05:23:08,196] [main] user.language = en [testng] [2025-03-13 05:23:08,196] [main] user.country = ${user.country} [testng] [2025-03-13 05:23:08,196] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-13 05:23:10,171] [main] ---------------------------------------- [testng] [2025-03-13 05:23:10,171] [main] Total files: 18 [testng] [2025-03-13 05:23:10,171] [main] Scan time: 1.975 s (109 ms/file) [testng] [2025-03-13 05:23:10,171] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 18 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-13 05:23:25,759] [pool-1-thread-1] Initializing /data/qa-4117/caspase gel-1.psd: [testng] 05:23:25,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:23:25,759 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:25,761 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-13_05-23-25.log] [testng] 05:23:25,761 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d50a32 - End of configuration. [testng] [2025-03-13 05:23:26,469] [pool-1-thread-12] Initializing /data/ascb/thin&thick fill.2.psd: [testng] 05:23:26,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:23:26,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:26,470 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-13_05-23-26.log] [testng] 05:23:26,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7239982c - End of configuration. [testng] [2025-03-13 05:23:27,083] [pool-1-thread-11] Initializing /data/jcb/Fig5A_siHP16h.tif: [testng] 05:23:27,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:23:27,083 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:27,084 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-13_05-23-27.log] [testng] 05:23:27,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6b3c3c9b - End of configuration. [testng] [2025-03-13 05:23:27,744] [pool-1-thread-10] Initializing /data/misc/vig_drawing_1.psd: [testng] 05:23:27,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:23:27,744 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:27,745 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-13_05-23-27.log] [testng] 05:23:27,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e83da82 - End of configuration. [testng] [2025-03-13 05:23:28,415] [pool-1-thread-9] Initializing /data/jcb/Fig5A_sicont6h.tif: [testng] 05:23:28,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:23:28,415 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:28,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-13_05-23-28.log] [testng] 05:23:28,416 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5d5a5294 - End of configuration. [testng] [2025-03-13 05:23:29,059] [pool-1-thread-8] Initializing /data/misc/venus_composite_8bit.psd: [testng] 05:23:29,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:23:29,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:29,059 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-13_05-23-29.log] [testng] 05:23:29,060 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c652f64 - End of configuration. [testng] [2025-03-13 05:23:29,663] [pool-1-thread-7] Initializing /data/misc/venus_composite.psd: [testng] 05:23:29,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:23:29,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:29,664 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-13_05-23-29.log] [testng] 05:23:29,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cd45fd8 - End of configuration. [testng] [2025-03-13 05:23:30,261] [pool-1-thread-6] Initializing /data/ascb/607x.psd: [testng] 05:23:30,261 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:23:30,262 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:30,262 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-13_05-23-30.log] [testng] 05:23:30,263 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2175c67f - End of configuration. [testng] [2025-03-13 05:23:30,873] [pool-1-thread-5] Initializing /data/qa-7632/23283078__NA_NA_27343.psd: [testng] 05:23:30,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:23:30,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:30,874 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-13_05-23-30.log] [testng] 05:23:30,875 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67100144 - End of configuration. [testng] [2025-03-13 05:23:31,574] [pool-1-thread-4] Initializing /data/big-images/8kx8k.psd: [testng] 05:23:31,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:23:31,574 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:31,575 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-13_05-23-31.log] [testng] 05:23:31,575 |-INFO in ch.qos.logback.core.sift.SiftProcessor@417ee16a - End of configuration. [testng] [2025-03-13 05:23:32,189] [pool-1-thread-3] Initializing /data/jcb/Fig5A_sip1506h.tif: [testng] 05:23:32,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:23:32,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:32,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-13_05-23-32.log] [testng] 05:23:32,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60dfd808 - End of configuration. [testng] [2025-03-13 05:23:32,797] [pool-1-thread-2] Initializing /data/ascb/423.psd: [testng] 05:23:32,797 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:23:32,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:23:32,798 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-13_05-23-32.log] [testng] 05:23:32,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25cfda94 - End of configuration. [testng] [2025-03-13 05:23:40,431] [pool-1-thread-7] Initializing /data/misc/glossy_orbs.psd: [testng] [2025-03-13 05:23:41,127] [pool-1-thread-10] Initializing /data/misc/smilie.psd: [testng] [2025-03-13 05:23:41,908] [pool-1-thread-1] Initializing /data/cris/house.tif: [testng] [2025-03-13 05:23:44,602] [pool-1-thread-3] Initializing /data/misc/glossy_buttons.psd: [testng] [2025-03-13 05:23:45,336] [pool-1-thread-8] Initializing /data/simon/colour_separated_image.psd: [testng] [2025-03-13 05:23:46,061] [pool-1-thread-9] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 954, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 57 seconds Finished: SUCCESS