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Started by upstream project "BIOFORMATS-test-repo" build number 376 originally caused by: Started by upstream project "Trigger" build number 399 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@5 [BIOFORMATS-test-folder@5] $ /bin/bash -xe /tmp/jenkins7586587048398964226.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59623_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 06:58:47,508 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 06:58:47,510 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 06:58:47,510 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:58:47,511 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 06:58:47,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 06:58:47,511 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 06:58:47,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 06:58:47,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:58:47,512 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 06:58:47,513 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 06:58:47,513 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 06:58:47,513 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 06:58:47,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 06:58:47,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 06:58:47,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 06:58:47,718 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 06:58:47,726 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 06:58:47,726 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 06:58:47,726 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 06:58:47,727 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 06:58:47,727 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 06:58:47,728 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 06:58:47,728 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 216 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-13 06:58:47,737] [main] java.version = 21 [testng] 06:58:47,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 06:58:47,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:47,783 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-13_06-58-47.log] [testng] 06:58:47,784 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-13 06:58:47,786] [main] testng.directory = /data [testng] [2025-03-13 06:58:47,786] [main] testng.configDirectory = /config [testng] [2025-03-13 06:58:47,795] [main] testng.multiplier = 1.0 [testng] [2025-03-13 06:58:47,795] [main] testng.in-memory = false [testng] [2025-03-13 06:58:47,796] [main] testng.allow-missing = false [testng] [2025-03-13 06:58:47,796] [main] user.language = en [testng] [2025-03-13 06:58:47,796] [main] user.country = ${user.country} [testng] [2025-03-13 06:58:47,796] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-13 06:58:53,167] [main] ---------------------------------------- [testng] [2025-03-13 06:58:53,167] [main] Total files: 17 [testng] [2025-03-13 06:58:53,167] [main] Scan time: 5.371 s (315 ms/file) [testng] [2025-03-13 06:58:53,168] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-13 06:58:58,692] [pool-1-thread-1] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 06:58:58,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:58:58,693 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:58,694 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-13_06-58-58.log] [testng] 06:58:58,694 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23aace58 - End of configuration. [testng] [2025-03-13 06:58:59,019] [pool-1-thread-12] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 06:58:59,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:58:59,019 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:59,021 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-13_06-58-59.log] [testng] 06:58:59,021 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1281e483 - End of configuration. [testng] [2025-03-13 06:58:59,326] [pool-1-thread-11] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] 06:58:59,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:58:59,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:59,328 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-13_06-58-59.log] [testng] 06:58:59,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cfa6ef2 - End of configuration. [testng] [2025-03-13 06:58:59,625] [pool-1-thread-10] Initializing /data/samples/24bit 300x200x3.ipm: [testng] 06:58:59,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:58:59,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:59,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-13_06-58-59.log] [testng] 06:58:59,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d3347d - End of configuration. [testng] [2025-03-13 06:58:59,917] [pool-1-thread-9] Initializing /data/christopher/Color48 Copy.ipm: [testng] 06:58:59,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:58:59,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:59,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-13_06-58-59.log] [testng] 06:58:59,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@707f3685 - End of configuration. [testng] [2025-03-13 06:59:00,190] [pool-1-thread-8] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 06:59:00,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:59:00,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:00,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-13_06-59-00.log] [testng] 06:59:00,192 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7725333a - End of configuration. [testng] [2025-03-13 06:59:00,476] [pool-1-thread-7] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 06:59:00,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:59:00,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:00,478 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-13_06-59-00.log] [testng] 06:59:00,479 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a6cf4c2 - End of configuration. [testng] [2025-03-13 06:59:00,741] [pool-1-thread-6] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 06:59:00,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:59:00,741 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:00,742 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-13_06-59-00.log] [testng] 06:59:00,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d00e4b7 - End of configuration. [testng] [2025-03-13 06:59:01,035] [pool-1-thread-5] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 06:59:01,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:59:01,035 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:01,036 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-13_06-59-01.log] [testng] 06:59:01,036 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3856a1ff - End of configuration. [testng] [2025-03-13 06:59:01,567] [pool-1-thread-4] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] 06:59:01,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:59:01,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:01,568 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-13_06-59-01.log] [testng] 06:59:01,568 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fad7e21 - End of configuration. [testng] [2025-03-13 06:59:02,050] [pool-1-thread-3] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 06:59:02,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:59:02,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:02,051 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-13_06-59-02.log] [testng] 06:59:02,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@8a65d62 - End of configuration. [testng] [2025-03-13 06:59:02,538] [pool-1-thread-2] Initializing /data/samples/16bit 320x256x1.ipm: [testng] 06:59:02,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:59:02,538 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:02,539 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-13_06-59-02.log] [testng] 06:59:02,539 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b3bab6d - End of configuration. [testng] [2025-03-13 06:59:09,414] [pool-1-thread-10] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] [2025-03-13 06:59:09,877] [pool-1-thread-7] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] [2025-03-13 06:59:10,330] [pool-1-thread-6] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] [2025-03-13 06:59:10,730] [pool-1-thread-5] Initializing /data/samples/48bit 150x100x3.ipm: [testng] [2025-03-13 06:59:11,132] [pool-1-thread-11] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 32 seconds Finished: SUCCESS