Started by upstream project "BIOFORMATS-test-repo" build number 378
originally caused by:
Started by upstream project "Trigger" build number 400
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins7240353239500356817.sh
+ '[' jpeg2000 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_59888_merge_ci -v /uod/idr/repos/curated/jpeg2000:/data -v /uod/idr-scratch/merge-ci/curated/jpeg2000:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 11:29:13,041 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 11:29:13,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service.
[testng] 11:29:13,043 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:29:13,044 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 11:29:13,044 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 11:29:13,045 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 11:29:13,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 11:29:13,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:29:13,045 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 11:29:13,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 11:29:13,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 11:29:13,046 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 11:29:13,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 11:29:13,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 11:29:13,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 11:29:13,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 11:29:13,325 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 11:29:13,325 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 11:29:13,325 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 11:29:13,325 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 11:29:13,325 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration.
[testng] 11:29:13,326 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point
[testng] 11:29:13,326 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 281 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-14 11:29:13,336] [main] java.version = 1.8.0_342
[testng] 11:29:13,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 11:29:13,340 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:29:13,383 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-14_11-29-13.log]
[testng] 11:29:13,384 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration.
[testng] [2025-03-14 11:29:13,386] [main] testng.directory = /data
[testng] [2025-03-14 11:29:13,386] [main] testng.configDirectory = /config
[testng] [2025-03-14 11:29:13,398] [main] testng.multiplier = 1.0
[testng] [2025-03-14 11:29:13,398] [main] testng.in-memory = false
[testng] [2025-03-14 11:29:13,398] [main] testng.allow-missing = false
[testng] [2025-03-14 11:29:13,398] [main] user.language = en
[testng] [2025-03-14 11:29:13,398] [main] user.country = ${user.country}
[testng] [2025-03-14 11:29:13,398] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2025-03-14 11:29:47,737] [main] ----------------------------------------
[testng] [2025-03-14 11:29:47,737] [main] Total files: 31
[testng] [2025-03-14 11:29:47,737] [main] Scan time: 34.339 s (1107 ms/file)
[testng] [2025-03-14 11:29:47,737] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 30 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-14 11:30:37,649] [pool-1-thread-1] Initializing /data/vikram/Captured 3.jp2:
[testng] 11:30:37,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 11:30:37,650 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:37,651 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-14_11-30-37.log]
[testng] 11:30:37,651 |-INFO in ch.qos.logback.core.sift.SiftProcessor@764b2837 - End of configuration.
[testng] [2025-03-14 11:30:38,801] [pool-1-thread-12] Initializing /data/vikram/Captured 5.jp2:
[testng] 11:30:38,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 11:30:38,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:38,802 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-14_11-30-38.log]
[testng] 11:30:38,802 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12e9f1cf - End of configuration.
[testng] [2025-03-14 11:30:40,030] [pool-1-thread-11] Initializing /data/venu/Multichannel 3.jp2:
[testng] 11:30:40,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 11:30:40,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:40,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-14_11-30-40.log]
[testng] 11:30:40,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@442931f9 - End of configuration.
[testng] [2025-03-14 11:30:41,304] [pool-1-thread-10] Initializing /data/david/000000_000001.jpx:
[testng] 11:30:41,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 11:30:41,304 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:41,305 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-14_11-30-41.log]
[testng] 11:30:41,306 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4654cdee - End of configuration.
[testng] [2025-03-14 11:30:42,469] [pool-1-thread-9] Initializing /data/david/cy5-tph.jp2:
[testng] 11:30:42,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 11:30:42,469 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:42,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-14_11-30-42.log]
[testng] 11:30:42,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ef2bafc - End of configuration.
[testng] [2025-03-14 11:30:43,456] [pool-1-thread-8] Initializing /data/vikram/Captured 4.jp2:
[testng] 11:30:43,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 11:30:43,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:43,457 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-14_11-30-43.log]
[testng] 11:30:43,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@256e343c - End of configuration.
[testng] [2025-03-14 11:30:45,351] [pool-1-thread-7] Initializing /data/venu/Multichannel 3a.jpg:
[testng] 11:30:45,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 11:30:45,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:45,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-14_11-30-45.log]
[testng] 11:30:45,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@514eeb34 - End of configuration.
[testng] [2025-03-14 11:30:45,618] [pool-1-thread-6] Initializing /data/frans/flower.jp2:
[testng] 11:30:45,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 11:30:45,619 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:45,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-14_11-30-45.log]
[testng] 11:30:45,621 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2170d0f7 - End of configuration.
[testng] [2025-03-14 11:30:46,657] [pool-1-thread-5] Initializing /data/misc/clown-rgb.jp2:
[testng] 11:30:46,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 11:30:46,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:46,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-14_11-30-46.log]
[testng] 11:30:46,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34e40ea8 - End of configuration.
[testng] [2025-03-14 11:30:47,642] [pool-1-thread-4] Initializing /data/misc/clown-rgb.jbig:
[testng] 11:30:47,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 11:30:47,642 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:47,643 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-14_11-30-47.log]
[testng] 11:30:47,643 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f5b09a4 - End of configuration.
[testng] [2025-03-14 11:30:50,820] [pool-1-thread-3] Initializing /data/aryeh/flour 12.jp2:
[testng] 11:30:50,820 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 11:30:50,821 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:50,821 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-14_11-30-50.log]
[testng] 11:30:50,822 |-INFO in ch.qos.logback.core.sift.SiftProcessor@38b86200 - End of configuration.
[testng] [2025-03-14 11:30:51,924] [pool-1-thread-2] Initializing /data/mike/LCM-4-3-color-cleaned.tiff:
[testng] 11:30:51,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 11:30:51,924 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 11:30:51,925 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-14_11-30-51.log]
[testng] 11:30:51,925 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4334d507 - End of configuration.
[testng] [2025-03-14 11:31:07,008] [pool-1-thread-7] Initializing /data/big-images/4kx4k.jpf:
[testng] [2025-03-14 11:31:08,631] [pool-1-thread-5] Initializing /data/vikram/Captured 1.jp2:
[testng] [2025-03-14 11:31:09,805] [pool-1-thread-1] Initializing /data/david/multichannel-3d-MBF-type.jpx:
[testng] [2025-03-14 11:31:12,307] [pool-1-thread-3] Initializing /data/misc/clown-rgb.jpc:
[testng] [2025-03-14 11:31:13,515] [pool-1-thread-12] Initializing /data/mike/LCM-4-3-color-cleaned.jp2:
[testng] [2025-03-14 11:31:14,634] [pool-1-thread-8] Initializing /data/david/multichannel-2d test.jp2:
[testng] [2025-03-14 11:31:15,777] [pool-1-thread-10] Initializing /data/angel/052_L050071_56_x2hv.jp2:
[testng] [2025-03-14 11:31:19,406] [pool-1-thread-4] Initializing /data/big-images/2kx2k.jpf:
[testng] [2025-03-14 11:31:24,088] [pool-1-thread-11] Initializing /data/david/C1R1_FOS.jp2:
[testng] [2025-03-14 11:31:25,727] [pool-1-thread-2] Initializing /data/kraig/head.jp2:
[testng] [2025-03-14 11:31:26,769] [pool-1-thread-6] Initializing /data/vikram/Captured 2.jp2:
[testng] [2025-03-14 11:31:27,747] [pool-1-thread-3] Initializing /data/david/multichannel-3d-non-MBF-trial-2.jpx:
[testng] [2025-03-14 11:31:29,190] [pool-1-thread-5] Initializing /data/angel/002_L050071_32_01_09_x2.jp2:
[testng] [2025-03-14 11:31:38,585] [pool-1-thread-6] Initializing /data/mike/LCM4-1-cr10-cleaned.jp2:
[testng] [2025-03-14 11:31:40,380] [pool-1-thread-2] Initializing /data/big-images/8kx8k.jpf:
[testng] [2025-03-14 11:31:43,885] [pool-1-thread-12] Initializing /data/david/multichannel-2d test-non MBF-type.jp2:
[testng] [2025-03-14 11:31:45,344] [pool-1-thread-4] Initializing /data/mike/LCM-4-3-color-cleaned-LOCI.tiff:
[testng] [2025-03-14 11:31:51,139] [pool-1-thread-10] Initializing /data/mario/b0bCDME-0007_wB05_s1_z1_t1_cGFP_u001.jp2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1590, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 6 minutes 36 seconds
Finished: SUCCESS