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Started by upstream project "BIOFORMATS-test-repo" build number 379 originally caused by: Started by upstream project "Trigger" build number 401 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7 [BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins5210534497714661427.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_59982_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 03:45:04,415 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 03:45:04,416 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 03:45:04,416 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:45:04,417 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:45:04,418 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:45:04,418 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:45:04,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:45:04,418 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:45:04,419 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:45:04,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:45:04,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:45:04,420 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:45:04,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:45:04,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:45:04,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:45:04,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:45:04,617 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:45:04,617 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:45:04,617 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:45:04,618 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:45:04,618 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 03:45:04,619 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 03:45:04,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 200 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-15 03:45:04,629] [main] java.version = 11.0.16 [testng] 03:45:04,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:45:04,632 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:45:04,674 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-15_03-45-04.log] [testng] 03:45:04,676 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-15 03:45:04,678] [main] testng.directory = /data [testng] [2025-03-15 03:45:04,678] [main] testng.configDirectory = /config [testng] [2025-03-15 03:45:04,688] [main] testng.multiplier = 1.0 [testng] [2025-03-15 03:45:04,689] [main] testng.in-memory = false [testng] [2025-03-15 03:45:04,689] [main] testng.allow-missing = false [testng] [2025-03-15 03:45:04,689] [main] user.language = en [testng] [2025-03-15 03:45:04,689] [main] user.country = ${user.country} [testng] [2025-03-15 03:45:04,689] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-15 04:28:33,755] [main] ---------------------------------------- [testng] [2025-03-15 04:28:33,756] [main] Total files: 14121 [testng] [2025-03-15 04:28:33,756] [main] Scan time: 2609.066 s (184 ms/file) [testng] [2025-03-15 04:28:33,756] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 261 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-15 05:08:59,293] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 05:08:59,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:08:59,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:08:59,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-15_05-08-59.log] [testng] 05:08:59,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@553b6139 - End of configuration. [testng] [2025-03-15 05:09:13,377] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] 05:09:13,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:09:13,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:13,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-15_05-09-13.log] [testng] 05:09:13,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37556720 - End of configuration. [testng] [2025-03-15 05:09:15,523] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] 05:09:15,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:09:15,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:15,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-15_05-09-15.log] [testng] 05:09:15,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b109ae5 - End of configuration. [testng] [2025-03-15 05:09:30,350] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] 05:09:30,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:09:30,350 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:30,351 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-15_05-09-30.log] [testng] 05:09:30,351 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d6fb4fe - End of configuration. [testng] [2025-03-15 05:09:34,009] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] 05:09:34,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:09:34,009 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:34,010 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-15_05-09-34.log] [testng] 05:09:34,010 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9743f50 - End of configuration. [testng] [2025-03-15 05:09:43,153] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] 05:09:43,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:09:43,153 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:43,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-15_05-09-43.log] [testng] 05:09:43,154 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79c8e98c - End of configuration. [testng] [2025-03-15 05:09:45,298] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] 05:09:45,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:09:45,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:45,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-15_05-09-45.log] [testng] 05:09:45,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6fe822da - End of configuration. [testng] [2025-03-15 05:09:47,337] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] 05:09:47,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:09:47,337 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:47,337 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-15_05-09-47.log] [testng] 05:09:47,338 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7494efcc - End of configuration. [testng] [2025-03-15 05:09:50,855] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] 05:09:50,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:09:50,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:50,856 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-15_05-09-50.log] [testng] 05:09:50,856 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3d95879a - End of configuration. [testng] [2025-03-15 05:09:53,252] [pool-1-thread-5] Used files list does not include base file [testng] [2025-03-15 05:09:53,254] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] 05:09:53,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:09:53,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:53,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-15_05-09-53.log] [testng] 05:09:53,255 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d202a17 - End of configuration. [testng] [2025-03-15 05:09:55,655] [pool-1-thread-4] Used files list does not include base file [testng] [2025-03-15 05:09:55,658] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] 05:09:55,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:09:55,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:55,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-15_05-09-55.log] [testng] 05:09:55,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77245811 - End of configuration. [testng] [2025-03-15 05:09:57,373] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-15 05:09:57,375] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] 05:09:57,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:09:57,375 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:09:57,376 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-15_05-09-57.log] [testng] 05:09:57,376 |-INFO in ch.qos.logback.core.sift.SiftProcessor@354762f7 - End of configuration. [testng] [2025-03-15 05:10:11,341] [pool-1-thread-2] Initializing /data/samples/zserEight.stk: [testng] [2025-03-15 05:10:17,578] [pool-1-thread-10] Initializing /data/ascb/golgi marker.tif: [testng] [2025-03-15 05:10:29,462] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2025-03-15 05:10:32,253] [pool-1-thread-2] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2025-03-15 05:10:35,094] [pool-1-thread-3] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2025-03-15 05:10:38,720] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-15 05:10:44,490] [pool-1-thread-10] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2025-03-15 05:10:46,933] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-15 05:10:52,634] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2025-03-15 05:10:59,984] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-03-15 05:11:26,890] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2025-03-15 05:11:31,958] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2025-03-15 05:11:35,976] [pool-1-thread-9] Used files list does not include base file [testng] [2025-03-15 05:11:36,040] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2025-03-15 05:11:52,989] [pool-1-thread-2] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2025-03-15 05:11:59,469] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-15 05:12:06,382] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_HTR5_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-15 05:12:18,547] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-15 05:12:26,855] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2025-03-15 05:12:32,553] [pool-1-thread-4] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2025-03-15 05:13:12,365] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2025-03-15 05:13:15,162] [pool-1-thread-5] Used files list does not include base file [testng] [2025-03-15 05:13:23,269] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2025-03-15 05:13:26,936] [pool-1-thread-12] Used files list does not include base file [testng] [2025-03-15 05:13:30,583] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2025-03-15 05:13:42,869] [pool-1-thread-11] Initializing /data/samples/zserSixteen.stk: [testng] [2025-03-15 05:13:46,242] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2025-03-15 05:13:55,867] [pool-1-thread-2] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2025-03-15 05:14:03,716] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish9_w1FRET_s1_t1.TIF: [testng] [2025-03-15 05:14:26,273] [pool-1-thread-11] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] [2025-03-15 05:14:59,106] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-15 05:15:09,168] [pool-1-thread-9] Initializing 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[testng] [2025-03-15 05:20:03,828] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2025-03-15 05:20:21,815] [pool-1-thread-2] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2025-03-15 05:21:08,703] [pool-1-thread-2] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2025-03-15 05:21:26,358] [pool-1-thread-2] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2025-03-15 05:21:42,488] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/HCl/Dish2_w1FRET_t1.TIF: [testng] [2025-03-15 05:23:41,203] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2025-03-15 05:23:45,476] [pool-1-thread-6] Used files list does not include base file [testng] [2025-03-15 05:24:37,487] [pool-1-thread-7] Initializing /data/david/tl4.tif: [testng] [2025-03-15 05:24:59,360] [pool-1-thread-10] Initializing 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[pool-1-thread-12] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2025-03-15 06:10:08,128] [pool-1-thread-12] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-15 06:10:34,824] [pool-1-thread-8] Initializing /data/qa-16915/m-04.tif: [testng] [2025-03-15 06:10:56,616] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-15 06:11:13,039] [pool-1-thread-12] Initializing /data/cumol-test-series/23.001: [testng] [2025-03-15 06:12:37,136] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2025-03-15 06:12:40,615] [pool-1-thread-12] Used files list does not include base file [testng] [2025-03-15 06:13:52,386] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-15 06:14:20,037] [pool-1-thread-2] 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IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2025-03-15 06:27:52,148] [pool-1-thread-8] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2025-03-15 06:28:09,449] [pool-1-thread-8] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2025-03-15 06:28:16,974] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2025-03-15 06:28:20,665] [pool-1-thread-7] Used files list does not include base file [testng] [2025-03-15 06:28:28,477] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2025-03-15 06:28:32,094] [pool-1-thread-8] Used files list does not include base file [testng] [2025-03-15 06:28:32,135] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] [2025-03-15 06:28:52,325] [pool-1-thread-5] Initializing /data/josh/2101to800.stk: [testng] [2025-03-15 06:29:28,527] [pool-1-thread-10] Initializing 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[testng] [2025-03-15 06:38:26,744] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2025-03-15 06:38:44,004] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2025-03-15 06:38:53,041] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] [2025-03-15 06:39:03,144] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-15 06:39:43,781] [pool-1-thread-6] Initializing /data/thomas/t_test2001.tif: [testng] [2025-03-15 06:39:46,370] [pool-1-thread-2] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2025-03-15 06:40:02,088] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-15 06:40:08,682] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2025-03-15 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[testng] [2025-03-15 07:08:33,337] [pool-1-thread-10] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2025-03-15 07:08:41,203] [pool-1-thread-9] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2025-03-15 07:08:53,900] [pool-1-thread-5] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2025-03-15 07:09:01,095] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1B_ISOto5HT_4well/Dish2_w1FRET_s1_t1.TIF: [testng] [2025-03-15 07:09:40,575] [pool-1-thread-9] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2025-03-15 07:09:51,895] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-15 07:10:34,286] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-15 07:11:08,512] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2025-03-15 07:24:35,763] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2025-03-15 07:24:56,105] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-15 07:25:11,501] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2025-03-15 07:26:04,518] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-03-15 07:26:59,983] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2025-03-15 07:27:16,376] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-15 07:28:33,413] [pool-1-thread-4] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2025-03-15 07:33:20,815] [pool-1-thread-7] Initializing /data/josh/2101to400astk.stk: [testng] [2025-03-15 07:34:49,485] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-03-15 07:36:10,212] [pool-1-thread-7] Initializing /data/samples/10xcalib.stk: [testng] [2025-03-15 07:36:23,562] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2025-03-15 07:36:38,477] [pool-1-thread-7] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2025-03-15 07:36:51,864] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2025-03-15 07:36:54,800] [pool-1-thread-7] Initializing /data/ascb/C9 Stack.tif: [testng] [2025-03-15 07:37:11,061] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2025-03-15 07:37:15,024] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2025-03-15 07:37:30,587] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-03-15 07:37:33,411] [pool-1-thread-8] Initializing /data/ascb/mt aim.tif: [testng] [2025-03-15 07:37:48,069] [pool-1-thread-8] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2025-03-15 07:37:51,393] [pool-1-thread-7] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2025-03-15 07:38:03,533] [pool-1-thread-8] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-03-15 07:38:14,981] [pool-1-thread-8] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2025-03-15 07:38:40,031] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish8_w1FRET_s1_t1.TIF: [testng] [2025-03-15 07:38:57,070] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2025-03-15 07:39:08,718] [pool-1-thread-7] Initializing /data/samples/diatoms3d.stk: [testng] [2025-03-15 07:39:10,266] [pool-1-thread-4] Initializing /data/graham/G_Wright raw.stk: [testng] [2025-03-15 07:39:20,260] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2025-03-15 07:39:23,921] [pool-1-thread-4] Initializing /data/qa-30870/220209_posit5.tif: [testng] [2025-03-15 07:39:38,371] [pool-1-thread-4] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2025-03-15 07:39:52,113] [pool-1-thread-7] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2025-03-15 07:40:05,763] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-15 07:42:29,167] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2025-03-15 07:42:42,287] [pool-1-thread-2] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2025-03-15 07:43:01,282] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2025-03-15 07:43:29,950] [pool-1-thread-4] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-15 07:44:13,588] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-15 07:44:24,368] [pool-1-thread-4] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2025-03-15 07:45:04,662] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1A_ISOto5HT_4well/Dish1_w1FRET_s1_t1.TIF: [testng] [2025-03-15 07:49:43,288] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2025-03-15 07:49:54,950] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 12:08:51,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 12:08:51,127 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:08:51,128 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-15_12-08-51.log] [testng] 12:08:51,129 |-INFO in ch.qos.logback.core.sift.SiftProcessor@24a379a - End of configuration. [testng] 12:12:26,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 12:12:26,510 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:12:26,511 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-15_12-12-26.log] [testng] 12:12:26,512 |-INFO in ch.qos.logback.core.sift.SiftProcessor@343367b8 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13833, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 507 minutes 25 seconds Finished: SUCCESS