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Started by upstream project "BIOFORMATS-test-repo" build number 380 originally caused by: Started by upstream project "Trigger" build number 402 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins16764859488417281388.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 7 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60147_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 05:01:44,828 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 05:01:44,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 05:01:44,830 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:01:44,831 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 05:01:44,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 05:01:44,832 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 05:01:44,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 05:01:44,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:01:44,832 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 05:01:44,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 05:01:44,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 05:01:44,833 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 05:01:44,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 05:01:44,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 05:01:45,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 05:01:45,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 05:01:45,028 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 05:01:45,028 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 05:01:45,028 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 05:01:45,029 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 05:01:45,029 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 05:01:45,029 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 05:01:45,030 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 198 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-16 05:01:45,039] [main] java.version = 17.0.2 [testng] 05:01:45,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 05:01:45,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:01:45,082 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-16_05-01-45.log] [testng] 05:01:45,084 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-03-16 05:01:45,086] [main] testng.directory = /data [testng] [2025-03-16 05:01:45,086] [main] testng.configDirectory = /config [testng] [2025-03-16 05:01:45,094] [main] testng.multiplier = 1.0 [testng] [2025-03-16 05:01:45,095] [main] testng.in-memory = false [testng] [2025-03-16 05:01:45,095] [main] testng.allow-missing = false [testng] [2025-03-16 05:01:45,095] [main] user.language = en [testng] [2025-03-16 05:01:45,095] [main] user.country = ${user.country} [testng] [2025-03-16 05:01:45,095] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-16 06:01:19,346] [main] ---------------------------------------- [testng] [2025-03-16 06:01:19,346] [main] Total files: 14121 [testng] [2025-03-16 06:01:19,346] [main] Scan time: 3574.25 s (253 ms/file) [testng] [2025-03-16 06:01:19,346] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 261 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-16 06:58:01,522] [pool-1-thread-1] Initializing /data/qa-30870/220209_posit5.tif: [testng] 06:58:01,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 06:58:01,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:01,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-16_06-58-01.log] [testng] 06:58:01,524 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3eb0cb13 - End of configuration. [testng] [2025-03-16 06:58:03,627] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] 06:58:03,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 06:58:03,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:03,628 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-16_06-58-03.log] [testng] 06:58:03,628 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a64afab - End of configuration. [testng] [2025-03-16 06:58:06,484] [pool-1-thread-11] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] 06:58:06,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 06:58:06,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:06,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-16_06-58-06.log] [testng] 06:58:06,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a44184a - End of configuration. [testng] [2025-03-16 06:58:10,587] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] 06:58:10,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 06:58:10,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:10,588 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-16_06-58-10.log] [testng] 06:58:10,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f80ba9b - End of configuration. [testng] [2025-03-16 06:58:13,935] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish3_w1FRET_s1_t1.TIF: [testng] 06:58:13,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 06:58:13,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:13,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-16_06-58-13.log] [testng] 06:58:13,936 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d167824 - End of configuration. [testng] [2025-03-16 06:58:38,882] [pool-1-thread-8] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] 06:58:38,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 06:58:38,882 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:38,883 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-16_06-58-38.log] [testng] 06:58:38,883 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4dba8d31 - End of configuration. [testng] [2025-03-16 06:58:41,498] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] 06:58:41,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 06:58:41,498 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:41,498 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-16_06-58-41.log] [testng] 06:58:41,499 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57f3b6db - End of configuration. [testng] [2025-03-16 06:58:44,350] [pool-1-thread-7] Used files list does not include base file [testng] [2025-03-16 06:58:44,352] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] 06:58:44,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 06:58:44,352 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:44,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-16_06-58-44.log] [testng] 06:58:44,353 |-INFO in ch.qos.logback.core.sift.SiftProcessor@635c5e5d - End of configuration. [testng] [2025-03-16 06:58:56,429] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish5_w1FRET_s1_t1.TIF: [testng] 06:58:56,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 06:58:56,430 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:58:56,430 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-16_06-58-56.log] [testng] 06:58:56,431 |-INFO in ch.qos.logback.core.sift.SiftProcessor@427b257c - End of configuration. [testng] [2025-03-16 06:59:09,613] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] 06:59:09,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 06:59:09,613 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:09,613 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-16_06-59-09.log] [testng] 06:59:09,614 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45bd186a - End of configuration. [testng] [2025-03-16 06:59:15,045] [pool-1-thread-4] Used files list does not include base file [testng] [2025-03-16 06:59:15,046] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] 06:59:15,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 06:59:15,047 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:15,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-16_06-59-15.log] [testng] 06:59:15,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f45b869 - End of configuration. [testng] [2025-03-16 06:59:18,545] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-16 06:59:18,547] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] 06:59:18,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 06:59:18,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 06:59:18,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-16_06-59-18.log] [testng] 06:59:18,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@247138f8 - End of configuration. [testng] [2025-03-16 06:59:50,100] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/HCl/Dish2_w1FRET_t1.TIF: [testng] [2025-03-16 07:00:00,031] [pool-1-thread-12] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2025-03-16 07:00:04,911] [pool-1-thread-10] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2025-03-16 07:00:08,591] [pool-1-thread-1] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2025-03-16 07:00:22,844] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-16 07:00:43,095] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_4well/Dish10_w1FRET_s1_t1.TIF: [testng] [2025-03-16 07:01:11,621] [pool-1-thread-1] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2025-03-16 07:01:14,978] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1A_ISOto5HT_4well/Dish1_w1FRET_s1_t1.TIF: [testng] [2025-03-16 07:03:28,687] [pool-1-thread-12] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2025-03-16 07:03:35,628] [pool-1-thread-1] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2025-03-16 07:04:11,814] [pool-1-thread-12] Initializing /data/josh/2101to600e.stk: [testng] [2025-03-16 07:04:40,853] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2025-03-16 07:05:02,432] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-16 07:05:12,932] [pool-1-thread-7] Initializing /data/cumol-test-series/23.001: [testng] [2025-03-16 07:05:31,386] [pool-1-thread-1] Initializing /data/josh/2101to400bstk.stk: [testng] [2025-03-16 07:08:36,131] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2025-03-16 07:08:49,730] [pool-1-thread-7] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2025-03-16 07:08:57,240] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1E_ISOto5HT_4well/Dish4_w1FRET_s1_t1.TIF: [testng] [2025-03-16 07:09:30,440] [pool-1-thread-12] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-03-16 07:09:57,284] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2025-03-16 07:10:33,045] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2025-03-16 07:11:10,553] [pool-1-thread-7] Initializing /data/jae/RGB_s34.tif: [testng] [2025-03-16 07:11:24,002] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2025-03-16 07:11:33,751] [pool-1-thread-12] Used files list does not include base file [testng] [2025-03-16 07:12:11,810] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-16 07:15:47,667] [pool-1-thread-12] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2025-03-16 07:16:22,761] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2025-03-16 07:16:49,148] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish4_w1FRET_t1.TIF: [testng] [2025-03-16 07:20:10,497] [pool-1-thread-1] Initializing /data/qa-16915/m-01.tif: [testng] [2025-03-16 07:20:42,844] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-16 07:22:37,660] [pool-1-thread-1] Initializing /data/chris/Stream-2(partial).stk: [testng] [2025-03-16 07:23:44,888] [pool-1-thread-6] Initializing 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[pool-1-thread-9] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2025-03-16 09:52:09,661] [pool-1-thread-9] Initializing /data/ascb/mt mklp1.tif: [testng] [2025-03-16 09:52:45,858] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] [2025-03-16 09:53:32,478] [pool-1-thread-9] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2025-03-16 09:57:53,775] [pool-1-thread-9] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2025-03-16 09:58:32,280] [pool-1-thread-9] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2025-03-16 10:00:19,554] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-16 10:01:05,633] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2025-03-16 10:01:39,300] [pool-1-thread-4] Initializing /data/heiko/sample_2x2.stk: [testng] [2025-03-16 10:02:13,084] [pool-1-thread-4] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2025-03-16 10:03:14,221] [pool-1-thread-5] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2025-03-16 10:04:21,334] [pool-1-thread-5] Initializing /data/qa-16915/m-04.tif: [testng] [2025-03-16 10:04:49,407] [pool-1-thread-5] Initializing /data/graham/G_Wright raw.stk: [testng] [2025-03-16 10:05:01,259] [pool-1-thread-4] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2025-03-16 10:05:19,056] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish6_w1FRET_s1_t1.TIF: [testng] [2025-03-16 10:06:10,003] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-16 10:07:15,468] [pool-1-thread-4] Initializing /data/josh/2101to600b.stk: [testng] [2025-03-16 10:10:24,243] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2025-03-16 10:10:44,552] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-03-16 10:12:05,507] [pool-1-thread-4] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2025-03-16 10:12:43,237] [pool-1-thread-4] Initializing /data/steve/Experiment2.stk: [testng] [2025-03-16 10:13:17,223] [pool-1-thread-4] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2025-03-16 10:14:42,084] [pool-1-thread-12] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2025-03-16 10:15:07,325] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2025-03-16 10:15:32,359] [pool-1-thread-12] Initializing /data/ascb/C9 Stack.tif: [testng] [2025-03-16 10:16:07,277] [pool-1-thread-12] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2025-03-16 10:16:31,335] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-16 10:17:42,054] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-16 10:18:43,774] [pool-1-thread-12] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2025-03-16 10:19:58,573] [pool-1-thread-12] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2025-03-16 10:21:30,252] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-16 10:30:13,554] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2025-03-16 10:30:21,544] [pool-1-thread-12] Used files list does not include base file [testng] [2025-03-16 10:32:35,332] [pool-1-thread-6] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2025-03-16 10:32:40,747] [pool-1-thread-1] Initializing /data/qa-16915/m-04-561.tif: [testng] [2025-03-16 10:33:12,900] [pool-1-thread-1] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2025-03-16 10:34:03,718] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-16 10:34:34,324] [pool-1-thread-12] Initializing /data/steve/Experiment2.tif: [testng] [2025-03-16 10:34:56,964] [pool-1-thread-1] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2025-03-16 10:35:05,858] [pool-1-thread-12] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2025-03-16 10:35:26,305] [pool-1-thread-6] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2025-03-16 10:35:32,188] [pool-1-thread-2] Initializing /data/thomas/t_test2001.tif: [testng] [2025-03-16 10:35:44,212] [pool-1-thread-12] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2025-03-16 10:36:06,466] [pool-1-thread-6] Initializing /data/dave/Z Series.stk: [testng] [2025-03-16 10:36:12,941] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-03-16 10:36:18,084] [pool-1-thread-1] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2025-03-16 10:36:28,174] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2025-03-16 10:36:40,642] [pool-1-thread-6] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2025-03-16 10:36:47,110] [pool-1-thread-1] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2025-03-16 10:36:54,297] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] [2025-03-16 10:37:13,411] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-16 10:37:26,636] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish1(ISO200nM)_w1FRET_s1_t1.TIF: [testng] [2025-03-16 10:38:06,619] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-16 10:38:22,861] [pool-1-thread-1] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2025-03-16 10:38:36,234] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-16 10:39:01,739] [pool-1-thread-1] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2025-03-16 10:39:25,838] [pool-1-thread-1] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2025-03-16 10:39:39,081] [pool-1-thread-1] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish8_w1FRET_s1_t1.TIF: [testng] [2025-03-16 10:43:59,198] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_Vec_ISOto5HT_4well/Dish2_w1FRET_s1_t1.TIF: [testng] [2025-03-16 11:00:44,693] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish9_w1FRET_s1_t1.TIF: [testng] [2025-03-16 11:01:51,275] [pool-1-thread-6] Initializing /data/josh/2101to800.stk: [testng] [2025-03-16 11:04:23,416] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] 11:04:42,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 11:04:42,485 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:04:42,486 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-16_11-04-42.log] [testng] 11:04:42,486 |-INFO in ch.qos.logback.core.sift.SiftProcessor@517f7581 - End of configuration. [testng] [2025-03-16 11:05:26,885] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-16 11:05:59,255] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-03-16 11:06:29,584] [pool-1-thread-6] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2025-03-16 11:07:36,556] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2025-03-16 11:08:12,219] [pool-1-thread-6] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2025-03-16 11:08:39,753] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-03-16 11:10:02,094] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-03-16 11:26:16,846] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2025-03-16 11:26:47,370] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2025-03-16 11:27:10,416] [pool-1-thread-3] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-03-16 11:28:47,572] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2025-03-16 11:28:57,409] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2025-03-16 11:29:25,861] [pool-1-thread-3] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2025-03-16 11:30:01,699] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-03-16 11:30:42,423] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2025-03-16 11:30:48,246] [pool-1-thread-3] Used files list does not include base file [testng] [2025-03-16 11:31:23,911] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2025-03-16 11:31:56,670] [pool-1-thread-3] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2025-03-16 11:32:23,379] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-16 11:32:38,758] [pool-1-thread-4] Initializing /data/grant/X.STK: [testng] [2025-03-16 11:33:32,897] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2025-03-16 11:35:08,424] [pool-1-thread-6] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2025-03-16 11:35:35,363] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2025-03-16 11:35:51,149] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-16 11:36:09,158] [pool-1-thread-6] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2025-03-16 11:36:56,154] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2025-03-16 11:37:12,070] [pool-1-thread-6] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2025-03-16 11:37:32,876] [pool-1-thread-4] Initializing /data/alex/Selected FITC.stk: [testng] [2025-03-16 11:37:56,380] [pool-1-thread-4] Initializing /data/samples/zserEight.stk: [testng] [2025-03-16 11:38:18,434] [pool-1-thread-4] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2025-03-16 11:38:42,324] [pool-1-thread-6] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2025-03-16 11:39:00,858] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2025-03-16 11:39:23,694] [pool-1-thread-4] Initializing /data/samples/diatoms3d.stk: [testng] [2025-03-16 11:39:50,939] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2025-03-16 11:39:57,477] [pool-1-thread-4] Used files list does not include base file [testng] [2025-03-16 11:42:28,338] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_HTR5_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-03-16 11:42:52,403] [pool-1-thread-6] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2025-03-16 11:43:12,107] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-03-16 11:43:34,335] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2025-03-16 11:43:56,655] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2025-03-16 11:44:16,491] [pool-1-thread-5] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2025-03-16 11:44:34,509] [pool-1-thread-5] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2025-03-16 11:44:51,876] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2025-03-16 11:44:55,900] [pool-1-thread-5] Used files list does not include base file [testng] [2025-03-16 11:47:41,844] [pool-1-thread-5] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2025-03-16 11:48:44,360] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2025-03-16 11:49:43,476] [pool-1-thread-5] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2025-03-16 11:49:49,640] [pool-1-thread-3] Initializing /data/grant/XYZ_Image.STK: [testng] [2025-03-16 11:50:06,105] [pool-1-thread-5] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2025-03-16 11:50:21,524] [pool-1-thread-3] Initializing /data/josh/2101to600f.stk: [testng] [2025-03-16 11:51:07,318] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2025-03-16 11:51:28,112] [pool-1-thread-5] Initializing /data/doil/001-23 dapi.stk: [testng] [2025-03-16 11:52:16,725] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-03-16 11:54:56,487] [pool-1-thread-5] Initializing /data/qa-16887/m-01.tif: [testng] [2025-03-16 11:55:15,626] [pool-1-thread-5] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2025-03-16 11:55:37,964] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2025-03-16 11:56:00,095] [pool-1-thread-5] Initializing /data/josh/2101to600astk.stk: [testng] [2025-03-16 11:57:06,657] [pool-1-thread-3] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2025-03-16 11:58:04,470] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2025-03-16 11:58:41,321] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2025-03-16 11:58:59,260] [pool-1-thread-6] Initializing /data/samples/zser24.stk: [testng] [2025-03-16 11:59:09,674] [pool-1-thread-3] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2025-03-16 11:59:18,348] [pool-1-thread-6] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2025-03-16 11:59:25,116] [pool-1-thread-6] Used files list does not include base file [testng] [2025-03-16 11:59:38,352] [pool-1-thread-3] Initializing /data/samples/10xcalib.tif: [testng] [2025-03-16 12:00:04,104] [pool-1-thread-3] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2025-03-16 12:00:31,349] [pool-1-thread-4] Initializing /data/samples/zseries.stk: [testng] [2025-03-16 12:00:50,178] [pool-1-thread-4] Initializing /data/ascb/golgi marker.tif: [testng] [2025-03-16 12:01:10,786] [pool-1-thread-4] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] 01:10:41,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:10:41,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:10:41,114 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-17_01-10-41.log] [testng] 01:10:41,115 |-INFO in ch.qos.logback.core.sift.SiftProcessor@aec71c1 - End of configuration. [testng] 01:15:10,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:15:10,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:15:10,425 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-17_01-15-10.log] [testng] 01:15:10,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@27ff59b4 - End of configuration. [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 13833, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 1213 minutes 30 seconds Finished: SUCCESS