Started by upstream project "BIOFORMATS-test-repo" build number 381
originally caused by:
Started by upstream project "Trigger" build number 403
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins14009879789648998323.sh
+ '[' varian-mri = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_60296_merge_ci -v /uod/idr/repos/curated/varian-mri:/data -v /uod/idr-scratch/merge-ci/curated/varian-mri:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 07:30:54,831 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 07:30:54,833 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service.
[testng] 07:30:54,833 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:30:54,834 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 07:30:54,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 07:30:54,834 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 07:30:54,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 07:30:54,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:30:54,835 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 07:30:54,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 07:30:54,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 07:30:54,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 07:30:55,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 07:30:55,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 07:30:55,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 07:30:55,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 07:30:55,086 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 07:30:55,087 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 07:30:55,087 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 07:30:55,087 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 07:30:55,087 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration.
[testng] 07:30:55,088 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point
[testng] 07:30:55,088 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 253 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-17 07:30:55,098] [main] java.version = 1.8.0_342
[testng] 07:30:55,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 07:30:55,101 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:30:55,144 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-17_07-30-55.log]
[testng] 07:30:55,146 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration.
[testng] [2025-03-17 07:30:55,148] [main] testng.directory = /data
[testng] [2025-03-17 07:30:55,148] [main] testng.configDirectory = /config
[testng] [2025-03-17 07:30:55,162] [main] testng.multiplier = 1.0
[testng] [2025-03-17 07:30:55,162] [main] testng.in-memory = false
[testng] [2025-03-17 07:30:55,162] [main] testng.allow-missing = false
[testng] [2025-03-17 07:30:55,162] [main] user.language = fr
[testng] [2025-03-17 07:30:55,162] [main] user.country = FR
[testng] [2025-03-17 07:30:55,162] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2025-03-17 07:31:10,031] [main] ----------------------------------------
[testng] [2025-03-17 07:31:10,031] [main] Total files: 8
[testng] [2025-03-17 07:31:10,031] [main] Scan time: 14.869 s (1858 ms/file)
[testng] [2025-03-17 07:31:10,031] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 6 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-17 07:31:59,267] [pool-1-thread-1] Initializing /data/chrystelle/gemsir_10TI_01.img/slice001image001echo001.fdf:
[testng] 07:31:59,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 07:31:59,268 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:31:59,270 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-17_07-31-59.log]
[testng] 07:31:59,270 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6684c0a1 - End of configuration.
[testng] [2025-03-17 07:32:08,522] [pool-1-thread-6] Initializing /data/hannes/11.img/img_slab001image001echo001.fdf:
[testng] 07:32:08,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 07:32:08,522 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:32:08,523 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-17_07-32-08.log]
[testng] 07:32:08,523 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4bcf3940 - End of configuration.
[testng] [2025-03-17 07:32:09,607] [pool-1-thread-5] Initializing /data/hannes/11.img/data.fdf:
[testng] 07:32:09,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 07:32:09,607 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:32:09,607 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-17_07-32-09.log]
[testng] 07:32:09,608 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d808be - End of configuration.
[testng] [2025-03-17 07:32:10,715] [pool-1-thread-4] Initializing /data/hannes/12.img/slice001image001echo001.fdf:
[testng] 07:32:10,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 07:32:10,716 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:32:10,716 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-17_07-32-10.log]
[testng] 07:32:10,717 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d5cf83e - End of configuration.
[testng] [2025-03-17 07:32:16,070] [pool-1-thread-3] Initializing /data/hannes/04.img/slice001image001echo001.fdf:
[testng] 07:32:16,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 07:32:16,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:32:16,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-17_07-32-16.log]
[testng] 07:32:16,071 |-INFO in ch.qos.logback.core.sift.SiftProcessor@669e9db2 - End of configuration.
[testng] [2025-03-17 07:32:17,056] [pool-1-thread-2] Initializing /data/chrystelle/img_slab001image001echo001.fdf:
[testng] 07:32:17,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 07:32:17,056 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 07:32:17,057 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-17_07-32-17.log]
[testng] 07:32:17,057 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cec41a5 - End of configuration.
[testng] 08:49:16,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 08:49:16,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 08:49:16,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-17_08-49-16.log]
[testng] 08:49:16,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2320fa6f - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 318, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 78 minutes 24 seconds
Finished: SUCCESS