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Started by upstream project "BIOFORMATS-test-repo" build number 385 originally caused by: Started by upstream project "Trigger" build number 406 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4 [BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins15317494310122376042.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_60847_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 00:28:03,245 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:28:03,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 00:28:03,247 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:28:03,248 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:28:03,248 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:28:03,249 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:28:03,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:28:03,249 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:28:03,250 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:28:03,250 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:28:03,250 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:28:03,251 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:28:03,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:28:03,417 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:28:03,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:28:03,442 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:28:03,449 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:28:03,449 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:28:03,449 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:28:03,450 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:28:03,450 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 00:28:03,451 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 00:28:03,451 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 202 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-20 00:28:03,460] [main] java.version = 21 [testng] 00:28:03,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:28:03,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:03,507 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-20_00-28-03.log] [testng] 00:28:03,508 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-03-20 00:28:03,510] [main] testng.directory = /data [testng] [2025-03-20 00:28:03,510] [main] testng.configDirectory = /config [testng] [2025-03-20 00:28:03,519] [main] testng.multiplier = 1.0 [testng] [2025-03-20 00:28:03,520] [main] testng.in-memory = false [testng] [2025-03-20 00:28:03,520] [main] testng.allow-missing = false [testng] [2025-03-20 00:28:03,520] [main] user.language = en [testng] [2025-03-20 00:28:03,520] [main] user.country = ${user.country} [testng] [2025-03-20 00:28:03,520] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-20 00:28:06,548] [main] ---------------------------------------- [testng] [2025-03-20 00:28:06,548] [main] Total files: 36 [testng] [2025-03-20 00:28:06,548] [main] Scan time: 3.028 s (84 ms/file) [testng] [2025-03-20 00:28:06,549] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-20 00:28:17,242] [pool-1-thread-1] Initializing /data/generated/mri-stack17.pcx: [testng] 00:28:17,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:28:17,243 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:17,244 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-20_00-28-17.log] [testng] 00:28:17,244 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b7e8569 - End of configuration. [testng] [2025-03-20 00:28:17,326] [pool-1-thread-12] Initializing /data/generated/mri-stack15.pcx: [testng] 00:28:17,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:28:17,327 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:17,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-20_00-28-17.log] [testng] 00:28:17,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7418af50 - End of configuration. [testng] [2025-03-20 00:28:17,566] [pool-1-thread-11] Initializing /data/generated/mri-stack18.pcx: [testng] 00:28:17,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:28:17,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:17,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-20_00-28-17.log] [testng] 00:28:17,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0c73f5 - End of configuration. [testng] [2025-03-20 00:28:17,640] [pool-1-thread-10] Initializing /data/generated/mri-stack20.pcx: [testng] 00:28:17,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:28:17,640 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:17,641 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-20_00-28-17.log] [testng] 00:28:17,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a1b15ee - End of configuration. [testng] [2025-03-20 00:28:17,717] [pool-1-thread-9] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] 00:28:17,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:28:17,717 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:17,718 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-20_00-28-17.log] [testng] 00:28:17,718 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1baff8f3 - End of configuration. [testng] [2025-03-20 00:28:17,947] [pool-1-thread-8] Initializing /data/generated/mri-stack5.pcx: [testng] 00:28:17,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:28:17,948 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:17,948 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-20_00-28-17.log] [testng] 00:28:17,949 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1eef41a - End of configuration. [testng] [2025-03-20 00:28:18,031] [pool-1-thread-7] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] 00:28:18,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:28:18,031 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:18,032 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-20_00-28-18.log] [testng] 00:28:18,032 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ba3d91f - End of configuration. [testng] [2025-03-20 00:28:18,278] [pool-1-thread-6] Initializing /data/generated/mri-stack13.pcx: [testng] 00:28:18,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:28:18,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:18,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-20_00-28-18.log] [testng] 00:28:18,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@f6cff2c - End of configuration. [testng] [2025-03-20 00:28:18,420] [pool-1-thread-5] Initializing /data/generated/mri-stack7.pcx: [testng] 00:28:18,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:28:18,420 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:18,421 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-20_00-28-18.log] [testng] 00:28:18,421 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b11b4a5 - End of configuration. [testng] [2025-03-20 00:28:18,628] [pool-1-thread-4] Initializing /data/generated/mri-stack21.pcx: [testng] 00:28:18,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:28:18,628 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:18,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-20_00-28-18.log] [testng] 00:28:18,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6d7b7883 - End of configuration. [testng] [2025-03-20 00:28:18,765] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx: [testng] 00:28:18,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:28:18,765 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:18,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-20_00-28-18.log] [testng] 00:28:18,766 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a89e1c - End of configuration. [testng] [2025-03-20 00:28:18,848] [pool-1-thread-2] Initializing /data/generated/mri-stack11.pcx: [testng] 00:28:18,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:28:18,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:18,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-20_00-28-18.log] [testng] 00:28:18,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79bc10b8 - End of configuration. [testng] [2025-03-20 00:28:24,983] [pool-1-thread-5] Initializing /data/generated/mri-stack22.pcx: [testng] [2025-03-20 00:28:25,142] [pool-1-thread-10] Initializing /data/generated/mri-stack26.pcx: [testng] [2025-03-20 00:28:25,298] [pool-1-thread-3] Initializing /data/generated/mri-stack3.pcx: [testng] [2025-03-20 00:28:25,509] [pool-1-thread-7] Initializing /data/generated/mri-stack19.pcx: [testng] [2025-03-20 00:28:25,700] [pool-1-thread-4] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2025-03-20 00:28:25,873] [pool-1-thread-6] Initializing /data/generated/mri-stack9.pcx: [testng] [2025-03-20 00:28:26,138] [pool-1-thread-11] Initializing /data/generated/mri-stack25.pcx: [testng] [2025-03-20 00:28:26,277] [pool-1-thread-12] Initializing /data/generated/mri-stack10.pcx: [testng] [2025-03-20 00:28:26,400] [pool-1-thread-8] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2025-03-20 00:28:26,577] [pool-1-thread-1] Initializing /data/generated/mri-stack23.pcx: [testng] [2025-03-20 00:28:26,800] [pool-1-thread-9] Initializing /data/generated/mri-stack14.pcx: [testng] [2025-03-20 00:28:26,974] [pool-1-thread-2] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2025-03-20 00:28:30,597] [pool-1-thread-7] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] [2025-03-20 00:28:30,760] [pool-1-thread-1] Initializing /data/generated/mri-stack16.pcx: [testng] [2025-03-20 00:28:30,867] [pool-1-thread-3] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2025-03-20 00:28:30,967] [pool-1-thread-5] Initializing /data/generated/mri-stack4.pcx: [testng] [2025-03-20 00:28:31,112] [pool-1-thread-6] Initializing /data/generated/mri-stack0.pcx: [testng] [2025-03-20 00:28:31,285] [pool-1-thread-11] Initializing /data/generated/mri-stack1.pcx: [testng] [2025-03-20 00:28:31,420] [pool-1-thread-10] Initializing /data/generated/mri-stack8.pcx: [testng] [2025-03-20 00:28:31,532] [pool-1-thread-9] Initializing /data/generated/mri-stack2.pcx: [testng] [2025-03-20 00:28:31,679] [pool-1-thread-12] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2025-03-20 00:28:32,138] [pool-1-thread-4] Initializing /data/generated/mri-stack24.pcx: [testng] [2025-03-20 00:28:32,503] [pool-1-thread-8] Initializing /data/generated/mri-stack6.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 seconds Finished: SUCCESS