Started by upstream project "BIOFORMATS-test-repo" build number 4
originally caused by:
Started by upstream project "Trigger" build number 5
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins8918808371392726155.sh
+ '[' nifti = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_611_merge_ci -v /uod/idr/repos/curated/nifti:/data -v /uod/idr-scratch/merge-ci/curated/nifti:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:30:54,974 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:30:54,975 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:30:54,975 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:30:54,976 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:30:54,977 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:30:54,977 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:30:54,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:30:54,977 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:30:54,978 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:30:54,978 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:30:54,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:30:54,979 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:30:55,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:30:55,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:30:55,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:30:55,176 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:30:55,182 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:30:55,183 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:30:55,183 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:30:55,183 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:30:55,183 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:30:55,184 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:30:55,184 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 206 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-17 02:30:55,193] [main] java.version = 17.0.2
[testng] 02:30:55,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:30:55,197 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:30:55,240 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-17_02-30-55.log]
[testng] 02:30:55,241 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-03-17 02:30:55,243] [main] testng.directory = /data
[testng] [2024-03-17 02:30:55,243] [main] testng.configDirectory = /config
[testng] [2024-03-17 02:30:55,252] [main] testng.multiplier = 1.0
[testng] [2024-03-17 02:30:55,253] [main] testng.in-memory = false
[testng] [2024-03-17 02:30:55,253] [main] testng.allow-missing = false
[testng] [2024-03-17 02:30:55,253] [main] user.language = en
[testng] [2024-03-17 02:30:55,253] [main] user.country = ${user.country}
[testng] [2024-03-17 02:30:55,254] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-03-17 02:30:58,352] [main] ----------------------------------------
[testng] [2024-03-17 02:30:58,352] [main] Total files: 23
[testng] [2024-03-17 02:30:58,353] [main] Scan time: 3.098 s (134 ms/file)
[testng] [2024-03-17 02:30:58,353] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 20 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-17 02:31:08,466] [pool-1-thread-1] Initializing /data/public/NIH/avg152T1_LR_nifti.nii.gz:
[testng] 02:31:08,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:31:08,467 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:08,468 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-17_02-31-08.log]
[testng] 02:31:08,469 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33c43354 - End of configuration.
[testng] [2024-03-17 02:31:09,217] [pool-1-thread-12] Initializing /data/public/NIH/avg152T1_RL_nifti.nii.gz:
[testng] 02:31:09,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:31:09,217 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:09,218 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-17_02-31-09.log]
[testng] 02:31:09,219 |-INFO in ch.qos.logback.core.sift.SiftProcessor@590dbcd2 - End of configuration.
[testng] [2024-03-17 02:31:09,935] [pool-1-thread-11] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_100.hdr:
[testng] 02:31:09,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:31:09,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:09,936 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-17_02-31-09.log]
[testng] 02:31:09,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104609de - End of configuration.
[testng] [2024-03-17 02:31:10,103] [pool-1-thread-10] Initializing /data/public/NIH/avg152T1_RL_nifti.nii:
[testng] 02:31:10,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:31:10,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:10,104 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-17_02-31-10.log]
[testng] 02:31:10,105 |-INFO in ch.qos.logback.core.sift.SiftProcessor@44ad95a8 - End of configuration.
[testng] [2024-03-17 02:31:10,251] [pool-1-thread-9] Initializing /data/qa-17334/volume4d.nii:
[testng] 02:31:10,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:31:10,251 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:10,252 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-17_02-31-10.log]
[testng] 02:31:10,252 |-INFO in ch.qos.logback.core.sift.SiftProcessor@362785ba - End of configuration.
[testng] [2024-03-17 02:31:10,392] [pool-1-thread-8] Initializing /data/public/NIH/newsirp_final_XML.nii:
[testng] 02:31:10,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:31:10,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:10,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-17_02-31-10.log]
[testng] 02:31:10,393 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a01c82 - End of configuration.
[testng] [2024-03-17 02:31:10,544] [pool-1-thread-7] Initializing /data/public/NIH/minimal.hdr:
[testng] 02:31:10,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:31:10,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:10,545 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-17_02-31-10.log]
[testng] 02:31:10,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@639bd8bc - End of configuration.
[testng] [2024-03-17 02:31:10,694] [pool-1-thread-6] Initializing /data/public/NIH/avg152T1_LR_nifti.nii:
[testng] 02:31:10,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:31:10,694 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:10,695 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-17_02-31-10.log]
[testng] 02:31:10,695 |-INFO in ch.qos.logback.core.sift.SiftProcessor@704e9205 - End of configuration.
[testng] [2024-03-17 02:31:10,844] [pool-1-thread-5] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_28_conf_94.hdr:
[testng] 02:31:10,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:31:10,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:10,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-17_02-31-10.log]
[testng] 02:31:10,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4da3e5e3 - End of configuration.
[testng] [2024-03-17 02:31:11,003] [pool-1-thread-4] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_94.hdr:
[testng] 02:31:11,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:31:11,003 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:11,004 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-17_02-31-11.log]
[testng] 02:31:11,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4197096d - End of configuration.
[testng] [2024-03-17 02:31:11,152] [pool-1-thread-3] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_25_conf_100.hdr:
[testng] 02:31:11,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:31:11,152 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:11,153 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-17_02-31-11.log]
[testng] 02:31:11,153 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b918d77 - End of configuration.
[testng] [2024-03-17 02:31:11,293] [pool-1-thread-2] Initializing /data/public/NIH/minimal.nii:
[testng] 02:31:11,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:31:11,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:31:11,294 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-17_02-31-11.log]
[testng] 02:31:11,295 |-INFO in ch.qos.logback.core.sift.SiftProcessor@552d763c - End of configuration.
[testng] [2024-03-17 02:31:13,697] [pool-1-thread-2] Initializing /data/public/NIH/zstat1.nii.gz:
[testng] [2024-03-17 02:31:14,310] [pool-1-thread-6] Initializing /data/public/NIH/zstat1.nii:
[testng] [2024-03-17 02:31:14,454] [pool-1-thread-10] Initializing /data/public/NIH/avg152T1_LR_nifti.hdr:
[testng] [2024-03-17 02:31:14,591] [pool-1-thread-9] Initializing /data/public/NIH/avg152T1_RL_nifti.hdr:
[testng] [2024-03-17 02:31:14,731] [pool-1-thread-8] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_27_conf_86.hdr:
[testng] [2024-03-17 02:31:15,061] [pool-1-thread-3] Initializing /data/public/NIH/filtered_func_data.nii.gz:
[testng] [2024-03-17 02:31:18,293] [pool-1-thread-4] Initializing /data/frans/eNlf-02-05-08-rats25-28_v1_rat_26_conf_91.hdr:
[testng] [2024-03-17 02:31:18,464] [pool-1-thread-11] Initializing /data/public/NIH/filtered_func_data.nii:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1060, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 56 seconds
Finished: SUCCESS