Started by upstream project "BIOFORMATS-test-repo" build number 43
originally caused by:
 Started by upstream project "Trigger" build number 50
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins15024879492710173769.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_6127_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 01:59:49,642 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:59:49,643 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 01:59:49,643 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:59:49,645 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:59:49,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:59:49,646 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:59:49,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:59:49,647 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:59:49,648 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:59:49,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:59:49,649 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:59:49,650 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:59:49,999 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:59:50,000 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:59:50,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:59:50,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:59:50,037 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:59:50,037 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:59:50,037 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:59:50,037 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:59:50,037 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 01:59:50,038 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 01:59:50,038 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 390 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-24 01:59:50,048] [main] java.version = 17.0.2
   [testng] 01:59:50,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:59:50,052 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:59:50,119 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-24_01-59-50.log]
   [testng] 01:59:50,121 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-04-24 01:59:50,125] [main] testng.directory = /data
   [testng] [2024-04-24 01:59:50,125] [main] testng.configDirectory = /config
   [testng] [2024-04-24 01:59:50,144] [main] testng.multiplier = 1.0
   [testng] [2024-04-24 01:59:50,146] [main] testng.in-memory = false
   [testng] [2024-04-24 01:59:50,146] [main] testng.allow-missing = false
   [testng] [2024-04-24 01:59:50,146] [main] user.language = en
   [testng] [2024-04-24 01:59:50,146] [main] user.country = ${user.country}
   [testng] [2024-04-24 01:59:50,146] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-24 01:59:51,272] [main] ----------------------------------------
   [testng] [2024-04-24 01:59:51,272] [main] Total files: 40
   [testng] [2024-04-24 01:59:51,272] [main] Scan time: 1.126 s (28 ms/file)
   [testng] [2024-04-24 01:59:51,272] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 38 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-24 02:04:03,664] [pool-1-thread-1] Initializing /data/william/worm.avi: 
   [testng] 02:04:03,664 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:04:03,665 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:03,666 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-24_02-04-03.log]
   [testng] 02:04:03,666 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60d87777 - End of configuration.
   [testng] [2024-04-24 02:04:03,683] [pool-1-thread-12] Initializing /data/kurt/40x_6um.avi: 
   [testng] 02:04:03,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:04:03,683 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:03,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-24_02-04-03.log]
   [testng] 02:04:03,684 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cd125aa - End of configuration.
   [testng] [2024-04-24 02:04:03,742] [pool-1-thread-11] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: 
   [testng] 02:04:03,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:04:03,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:03,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-24_02-04-03.log]
   [testng] 02:04:03,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@476e7440 - End of configuration.
   [testng] [2024-04-24 02:04:03,758] [pool-1-thread-10] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: 
   [testng] 02:04:03,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:04:03,758 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:03,759 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-24_02-04-03.log]
   [testng] 02:04:03,759 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bacaa8c - End of configuration.
   [testng] [2024-04-24 02:04:03,802] [pool-1-thread-9] Initializing /data/qa-5019/nemo-2_1_.avi: 
   [testng] 02:04:03,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:04:03,802 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:03,803 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-24_02-04-03.log]
   [testng] 02:04:03,803 |-INFO in ch.qos.logback.core.sift.SiftProcessor@b116390 - End of configuration.
   [testng] [2024-04-24 02:04:03,831] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: 
   [testng] 02:04:03,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:04:03,832 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:03,832 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-24_02-04-03.log]
   [testng] 02:04:03,833 |-INFO in ch.qos.logback.core.sift.SiftProcessor@462cf888 - End of configuration.
   [testng] [2024-04-24 02:04:03,865] [pool-1-thread-7] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: 
   [testng] 02:04:03,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:04:03,866 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:03,867 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-24_02-04-03.log]
   [testng] 02:04:03,867 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642045b5 - End of configuration.
   [testng] [2024-04-24 02:04:03,936] [pool-1-thread-6] Initializing /data/kurt/63x_6um.avi: 
   [testng] 02:04:03,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:04:03,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:03,937 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-24_02-04-03.log]
   [testng] 02:04:03,937 |-INFO in ch.qos.logback.core.sift.SiftProcessor@cfa3a19 - End of configuration.
   [testng] [2024-04-24 02:04:04,028] [pool-1-thread-5] Initializing /data/roger/spheroid1-crop.lsm movie.avi: 
   [testng] 02:04:04,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:04:04,028 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:04,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-24_02-04-04.log]
   [testng] 02:04:04,029 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6845aee - End of configuration.
   [testng] [2024-04-24 02:04:04,091] [pool-1-thread-4] Initializing /data/qa-5019/nemo-2_10_20.avi: 
   [testng] 02:04:04,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:04:04,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:04,092 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-24_02-04-04.log]
   [testng] 02:04:04,093 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61b7cb83 - End of configuration.
   [testng] [2024-04-24 02:04:04,124] [pool-1-thread-3] Initializing /data/chris/APZ04_009.avi: 
   [testng] 02:04:04,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:04:04,125 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:04,125 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-24_02-04-04.log]
   [testng] 02:04:04,126 |-INFO in ch.qos.logback.core.sift.SiftProcessor@264bedb1 - End of configuration.
   [testng] [2024-04-24 02:04:08,984] [pool-1-thread-2] Initializing /data/chip_avi/Level004-WA-116.avi: 
   [testng] 02:04:08,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:04:08,984 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:04:08,985 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-24_02-04-08.log]
   [testng] 02:04:08,985 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65f21d80 - End of configuration.
   [testng] [2024-04-24 02:04:10,498] [pool-1-thread-1] Initializing /data/qa-11011/M-flow10001.avi: 
   [testng] [2024-04-24 02:04:10,599] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie.avi: 
   [testng] [2024-04-24 02:04:10,626] [pool-1-thread-11] Initializing /data/jae/20xD_5minfor14h.avi: 
   [testng] [2024-04-24 02:04:11,055] [pool-1-thread-2] Initializing /data/ascb/TIRF.avi: 
   [testng] [2024-04-24 02:04:11,342] [pool-1-thread-4] Initializing /data/chip_avi/Level002-DB-090.avi: 
   [testng] [2024-04-24 02:04:11,356] [pool-1-thread-9] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: 
   [testng] [2024-04-24 02:04:11,676] [pool-1-thread-5] Initializing /data/kurt/40x_6um_2.avi: 
   [testng] [2024-04-24 02:04:11,774] [pool-1-thread-7] Initializing /data/chip_avi/Level001-ES-083.avi: 
   [testng] [2024-04-24 02:04:11,810] [pool-1-thread-10] Initializing /data/curtis/mri-stack-ij-new.avi: 
   [testng] [2024-04-24 02:04:11,986] [pool-1-thread-6] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: 
   [testng] [2024-04-24 02:04:12,057] [pool-1-thread-12] Initializing /data/roger/op9middle40x.lsm movie 3.avi: 
   [testng] [2024-04-24 02:04:12,127] [pool-1-thread-4] Initializing /data/prairie/cornea dc and macs.AVI: 
   [testng] [2024-04-24 02:04:12,179] [pool-1-thread-10] Initializing /data/simon/24_bit_problem.avi: 
   [testng] [2024-04-24 02:04:12,311] [pool-1-thread-8] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: 
   [testng] [2024-04-24 02:04:12,369] [pool-1-thread-7] Initializing /data/roger/op9middle40x.lsm movie 4.avi: 
   [testng] [2024-04-24 02:04:12,495] [pool-1-thread-2] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: 
   [testng] [2024-04-24 02:04:12,625] [pool-1-thread-6] Initializing /data/curtis/mri-stack-bf.avi: 
   [testng] [2024-04-24 02:04:12,766] [pool-1-thread-2] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: 
   [testng] [2024-04-24 02:04:12,920] [pool-1-thread-12] Initializing /data/qa-7450/MVI_3610.AVI: 
   [testng] [2024-04-24 02:04:12,981] [pool-1-thread-5] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: 
   [testng] [2024-04-24 02:04:43,040] [pool-1-thread-1] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: 
   [testng] [2024-04-24 02:04:43,076] [pool-1-thread-10] Initializing /data/chip_avi/Level003-DB-089.avi: 
   [testng] [2024-04-24 02:04:43,159] [pool-1-thread-6] Initializing /data/curtis/mri-stack-ij-old.avi: 
   [testng] [2024-04-24 02:04:43,218] [pool-1-thread-11] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: 
   [testng] [2024-04-24 02:04:43,225] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 2.avi: 
   [testng] [2024-04-24 02:04:43,296] [pool-1-thread-7] Initializing /data/roger/spheroid1.lsm movie.avi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2014, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 5 minutes 7 seconds
Finished: SUCCESS