Started by upstream project "BIOFORMATS-test-repo" build number 389 originally caused by: Started by upstream project "Trigger" build number 412 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3 [BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5127288570255014050.sh + '[' pcx = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_61487_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:28:01,292 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 00:28:01,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 00:28:01,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:28:01,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:28:01,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:28:01,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:28:01,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:28:01,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:28:01,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:28:01,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:28:01,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:28:01,299 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:28:01,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:28:01,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:28:01,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:28:01,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:28:01,580 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:28:01,580 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:28:01,580 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:28:01,581 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:28:01,581 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 00:28:01,582 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 00:28:01,582 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 284 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-24 00:28:01,592] [main] java.version = 1.8.0_342 [testng] 00:28:01,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:28:01,596 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:01,790 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-24_00-28-01.log] [testng] 00:28:01,791 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-03-24 00:28:01,812] [main] testng.directory = /data [testng] [2025-03-24 00:28:01,812] [main] testng.configDirectory = /config [testng] [2025-03-24 00:28:01,831] [main] testng.multiplier = 1.0 [testng] [2025-03-24 00:28:01,831] [main] testng.in-memory = false [testng] [2025-03-24 00:28:01,831] [main] testng.allow-missing = false [testng] [2025-03-24 00:28:01,831] [main] user.language = fr [testng] [2025-03-24 00:28:01,831] [main] user.country = FR [testng] [2025-03-24 00:28:01,832] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-03-24 00:28:03,040] [main] ---------------------------------------- [testng] [2025-03-24 00:28:03,040] [main] Total files: 36 [testng] [2025-03-24 00:28:03,040] [main] Scan time: 1.208 s (33 ms/file) [testng] [2025-03-24 00:28:03,040] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 35 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-24 00:28:04,783] [pool-1-thread-1] Initializing /data/generated/mri-stack13.pcx: [testng] 00:28:04,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:28:04,784 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-24_00-28-04.log] [testng] 00:28:04,785 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4453241b - End of configuration. [testng] [2025-03-24 00:28:04,833] [pool-1-thread-12] Initializing /data/generated/mri-stack23.pcx: [testng] 00:28:04,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:28:04,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-24_00-28-04.log] [testng] 00:28:04,834 |-INFO in ch.qos.logback.core.sift.SiftProcessor@482f83be - End of configuration. [testng] [2025-03-24 00:28:04,845] [pool-1-thread-11] Initializing /data/josh/Screenshots/leica-lif.pcx: [testng] 00:28:04,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:28:04,845 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,846 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-24_00-28-04.log] [testng] 00:28:04,846 |-INFO in ch.qos.logback.core.sift.SiftProcessor@718efea - End of configuration. [testng] [2025-03-24 00:28:04,860] [pool-1-thread-10] Initializing /data/generated/mri-stack17.pcx: [testng] 00:28:04,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:28:04,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,861 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-24_00-28-04.log] [testng] 00:28:04,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fee3bac - End of configuration. [testng] [2025-03-24 00:28:04,871] [pool-1-thread-9] Initializing /data/generated/mri-stack5.pcx: [testng] 00:28:04,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:28:04,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-24_00-28-04.log] [testng] 00:28:04,872 |-INFO in ch.qos.logback.core.sift.SiftProcessor@645d605a - End of configuration. [testng] [2025-03-24 00:28:04,883] [pool-1-thread-8] Initializing /data/generated/mri-stack7.pcx: [testng] 00:28:04,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:28:04,883 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,884 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-24_00-28-04.log] [testng] 00:28:04,884 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d90ac9 - End of configuration. [testng] [2025-03-24 00:28:04,895] [pool-1-thread-7] Initializing /data/generated/mri-stack11.pcx: [testng] 00:28:04,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:28:04,896 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,896 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-24_00-28-04.log] [testng] 00:28:04,897 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69577c52 - End of configuration. [testng] [2025-03-24 00:28:04,907] [pool-1-thread-6] Initializing /data/generated/mri-stack4.pcx: [testng] 00:28:04,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:28:04,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,908 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-24_00-28-04.log] [testng] 00:28:04,908 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b7a81a6 - End of configuration. [testng] [2025-03-24 00:28:04,917] [pool-1-thread-5] Initializing /data/generated/mri-stack15.pcx: [testng] 00:28:04,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:28:04,917 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,918 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-24_00-28-04.log] [testng] 00:28:04,918 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e4886a3 - End of configuration. [testng] [2025-03-24 00:28:04,927] [pool-1-thread-4] Initializing /data/generated/mri-stack2.pcx: [testng] 00:28:04,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:28:04,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-24_00-28-04.log] [testng] 00:28:04,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@61a134f0 - End of configuration. [testng] [2025-03-24 00:28:04,938] [pool-1-thread-3] Initializing /data/generated/mri-stack18.pcx: [testng] 00:28:04,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:28:04,938 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,938 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-24_00-28-04.log] [testng] 00:28:04,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4192d105 - End of configuration. [testng] [2025-03-24 00:28:04,949] [pool-1-thread-2] Initializing /data/generated/mri-stack8.pcx: [testng] 00:28:04,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:28:04,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:28:04,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-24_00-28-04.log] [testng] 00:28:04,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@bde6793 - End of configuration. [testng] [2025-03-24 00:28:06,980] [pool-1-thread-9] Initializing /data/generated/mri-stack3.pcx: [testng] [2025-03-24 00:28:06,994] [pool-1-thread-5] Initializing /data/generated/mri-stack22.pcx: [testng] [2025-03-24 00:28:07,006] [pool-1-thread-12] Initializing /data/generated/mri-stack20.pcx: [testng] [2025-03-24 00:28:07,013] [pool-1-thread-4] Initializing /data/generated/mri-stack19.pcx: [testng] [2025-03-24 00:28:07,022] [pool-1-thread-8] Initializing /data/josh/Screenshots/nd2 color.pcx: [testng] [2025-03-24 00:28:07,032] [pool-1-thread-7] Initializing /data/generated/mri-stack16.pcx: [testng] [2025-03-24 00:28:07,040] [pool-1-thread-3] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx: [testng] [2025-03-24 00:28:07,050] [pool-1-thread-10] Initializing /data/generated/mri-stack1.pcx: [testng] [2025-03-24 00:28:07,059] [pool-1-thread-1] Initializing /data/generated/mri-stack24.pcx: [testng] [2025-03-24 00:28:07,065] [pool-1-thread-6] Initializing /data/generated/mri-stack21.pcx: [testng] [2025-03-24 00:28:07,075] [pool-1-thread-2] Initializing /data/josh/Screenshots/biorad color off.pcx: [testng] [2025-03-24 00:28:07,087] [pool-1-thread-11] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx: [testng] [2025-03-24 00:28:07,568] [pool-1-thread-5] Initializing /data/generated/mri-stack25.pcx: [testng] [2025-03-24 00:28:07,578] [pool-1-thread-10] Initializing /data/generated/mri-stack6.pcx: [testng] [2025-03-24 00:28:07,586] [pool-1-thread-1] Initializing /data/generated/mri-stack26.pcx: [testng] [2025-03-24 00:28:07,593] [pool-1-thread-4] Initializing /data/generated/mri-stack9.pcx: [testng] [2025-03-24 00:28:07,625] [pool-1-thread-7] Initializing /data/josh/Screenshots/deltavision.pcx: [testng] [2025-03-24 00:28:07,646] [pool-1-thread-9] Initializing /data/josh/Screenshots/epscolor.pcx: [testng] [2025-03-24 00:28:07,669] [pool-1-thread-6] Initializing /data/generated/mri-stack12.pcx: [testng] [2025-03-24 00:28:07,690] [pool-1-thread-12] Initializing /data/generated/mri-stack14.pcx: [testng] [2025-03-24 00:28:07,842] [pool-1-thread-4] Initializing /data/josh/Screenshots/fv1000color.pcx: [testng] [2025-03-24 00:28:07,884] [pool-1-thread-10] Initializing /data/generated/mri-stack10.pcx: [testng] [2025-03-24 00:28:07,898] [pool-1-thread-1] Initializing /data/generated/mri-stack0.pcx: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1855, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 10 seconds Finished: SUCCESS