Started by upstream project "BIOFORMATS-test-repo" build number 389
originally caused by:
Started by upstream project "Trigger" build number 412
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins15050945044746271420.sh
+ '[' psd = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_61620_merge_ci -v /uod/idr/repos/curated/psd:/data -v /uod/idr-scratch/merge-ci/curated/psd:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:36:33,269 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 03:36:33,270 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service.
[testng] 03:36:33,271 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:36:33,271 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 03:36:33,272 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 03:36:33,272 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 03:36:33,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 03:36:33,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:36:33,273 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 03:36:33,273 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 03:36:33,273 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 03:36:33,273 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 03:36:33,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:36:33,482 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:36:33,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:36:33,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:36:33,516 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:36:33,516 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:36:33,516 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:36:33,516 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:36:33,516 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration.
[testng] 03:36:33,517 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point
[testng] 03:36:33,517 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 244 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-03-24 03:36:33,527] [main] java.version = 1.8.0_342
[testng] 03:36:33,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:36:33,530 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:36:33,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-24_03-36-33.log]
[testng] 03:36:33,574 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration.
[testng] [2025-03-24 03:36:33,576] [main] testng.directory = /data
[testng] [2025-03-24 03:36:33,576] [main] testng.configDirectory = /config
[testng] [2025-03-24 03:36:33,588] [main] testng.multiplier = 1.0
[testng] [2025-03-24 03:36:33,588] [main] testng.in-memory = false
[testng] [2025-03-24 03:36:33,588] [main] testng.allow-missing = false
[testng] [2025-03-24 03:36:33,588] [main] user.language = fr
[testng] [2025-03-24 03:36:33,588] [main] user.country = FR
[testng] [2025-03-24 03:36:33,588] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2025-03-24 03:36:34,858] [main] ----------------------------------------
[testng] [2025-03-24 03:36:34,858] [main] Total files: 18
[testng] [2025-03-24 03:36:34,858] [main] Scan time: 1.269 s (70 ms/file)
[testng] [2025-03-24 03:36:34,858] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-03-24 03:37:11,756] [pool-1-thread-1] Initializing /data/ascb/thin&thick fill.2.psd:
[testng] 03:37:11,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:37:11,756 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:11,757 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-24_03-37-11.log]
[testng] 03:37:11,758 |-INFO in ch.qos.logback.core.sift.SiftProcessor@516de83 - End of configuration.
[testng] [2025-03-24 03:37:13,564] [pool-1-thread-12] Initializing /data/jcb/Fig5A_sicont6h.tif:
[testng] 03:37:13,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 03:37:13,564 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:13,565 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-24_03-37-13.log]
[testng] 03:37:13,566 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36983228 - End of configuration.
[testng] [2025-03-24 03:37:15,641] [pool-1-thread-11] Initializing /data/qa-4497/22421435_Supl Fig 4_C_Flag_12987.psd:
[testng] 03:37:15,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 03:37:15,641 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:15,642 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-24_03-37-15.log]
[testng] 03:37:15,642 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42a6508a - End of configuration.
[testng] [2025-03-24 03:37:17,550] [pool-1-thread-10] Initializing /data/qa-4117/caspase gel-1.psd:
[testng] 03:37:17,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 03:37:17,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:17,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-24_03-37-17.log]
[testng] 03:37:17,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25d1c711 - End of configuration.
[testng] [2025-03-24 03:37:19,301] [pool-1-thread-9] Initializing /data/simon/colour_separated_image.psd:
[testng] 03:37:19,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 03:37:19,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:19,302 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-24_03-37-19.log]
[testng] 03:37:19,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fa92f05 - End of configuration.
[testng] [2025-03-24 03:37:20,998] [pool-1-thread-8] Initializing /data/misc/vig_drawing_1.psd:
[testng] 03:37:20,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 03:37:20,998 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:20,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-24_03-37-20.log]
[testng] 03:37:20,999 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67e296bc - End of configuration.
[testng] [2025-03-24 03:37:22,657] [pool-1-thread-7] Initializing /data/jcb/Fig5A_sip1506h.tif:
[testng] 03:37:22,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:37:22,658 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:22,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-24_03-37-22.log]
[testng] 03:37:22,659 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1585cf6f - End of configuration.
[testng] [2025-03-24 03:37:24,303] [pool-1-thread-6] Initializing /data/misc/venus_composite_8bit.psd:
[testng] 03:37:24,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:37:24,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:24,304 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-24_03-37-24.log]
[testng] 03:37:24,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5367d4f2 - End of configuration.
[testng] [2025-03-24 03:37:25,743] [pool-1-thread-5] Initializing /data/big-images/8kx8k.psd:
[testng] 03:37:25,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:37:25,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:25,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-24_03-37-25.log]
[testng] 03:37:25,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1589809c - End of configuration.
[testng] [2025-03-24 03:37:27,412] [pool-1-thread-4] Initializing /data/misc/glossy_orbs.psd:
[testng] 03:37:27,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:37:27,413 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:27,413 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-24_03-37-27.log]
[testng] 03:37:27,414 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ea61a97 - End of configuration.
[testng] [2025-03-24 03:37:29,156] [pool-1-thread-3] Initializing /data/ascb/423.psd:
[testng] 03:37:29,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:37:29,156 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:29,157 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-24_03-37-29.log]
[testng] 03:37:29,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2796d2d0 - End of configuration.
[testng] [2025-03-24 03:37:30,856] [pool-1-thread-2] Initializing /data/misc/smilie.psd:
[testng] 03:37:30,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:37:30,856 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:37:30,857 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-24_03-37-30.log]
[testng] 03:37:30,858 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d80dd3 - End of configuration.
[testng] [2025-03-24 03:37:46,659] [pool-1-thread-4] Initializing /data/cris/house.tif:
[testng] [2025-03-24 03:37:52,721] [pool-1-thread-9] Initializing /data/qa-7632/23283078__NA_NA_27343.psd:
[testng] [2025-03-24 03:37:54,604] [pool-1-thread-11] Initializing /data/misc/glossy_buttons.psd:
[testng] [2025-03-24 03:37:56,485] [pool-1-thread-2] Initializing /data/jcb/Fig5A_siHP16h.tif:
[testng] [2025-03-24 03:37:58,458] [pool-1-thread-8] Initializing /data/ascb/607x.psd:
[testng] [2025-03-24 03:38:00,409] [pool-1-thread-12] Initializing /data/misc/venus_composite.psd:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 2 minutes 3 seconds
Finished: SUCCESS