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Started by upstream project "BIOFORMATS-test-repo" build number 390 originally caused by: Started by upstream project "Trigger" build number 414 originally caused by: Started by user devspace Restarted from build #413, stage Bio-Formats Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2 [BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins190583947335938927.sh + '[' mrw = slidebook ']' ++ date +%u + '[' 2 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_61747_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 03:15:40,953 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 03:15:40,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 03:15:40,954 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:15:40,955 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 03:15:40,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 03:15:40,956 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 03:15:40,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 03:15:40,956 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:15:40,957 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 03:15:40,957 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 03:15:40,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 03:15:40,958 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 03:15:41,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 03:15:41,117 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 03:15:41,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 03:15:41,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 03:15:41,144 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 03:15:41,144 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 03:15:41,144 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 03:15:41,144 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 03:15:41,144 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 03:15:41,146 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 03:15:41,146 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 189 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-03-25 03:15:41,154] [main] java.version = 11.0.16 [testng] 03:15:41,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 03:15:41,157 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:15:41,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-03-25_03-15-41.log] [testng] 03:15:41,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-03-25 03:15:41,204] [main] testng.directory = /data [testng] [2025-03-25 03:15:41,204] [main] testng.configDirectory = /config [testng] [2025-03-25 03:15:41,213] [main] testng.multiplier = 1.0 [testng] [2025-03-25 03:15:41,214] [main] testng.in-memory = false [testng] [2025-03-25 03:15:41,214] [main] testng.allow-missing = false [testng] [2025-03-25 03:15:41,214] [main] user.language = en [testng] [2025-03-25 03:15:41,214] [main] user.country = ${user.country} [testng] [2025-03-25 03:15:41,214] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-03-25 03:15:41,701] [main] ---------------------------------------- [testng] [2025-03-25 03:15:41,701] [main] Total files: 19 [testng] [2025-03-25 03:15:41,701] [main] Scan time: 0.486 s (25 ms/file) [testng] [2025-03-25 03:15:41,701] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 19 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-03-25 03:16:43,540] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw: [testng] 03:16:43,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 03:16:43,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:43,543 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-03-25_03-16-43.log] [testng] 03:16:43,544 |-INFO in ch.qos.logback.core.sift.SiftProcessor@21dd91c1 - End of configuration. [testng] [2025-03-25 03:16:45,903] [pool-1-thread-12] Initializing /data/samples/200R PICT0002.MRW: [testng] 03:16:45,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 03:16:45,903 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:45,904 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-03-25_03-16-45.log] [testng] 03:16:45,905 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f675feb - End of configuration. [testng] [2025-03-25 03:16:48,709] [pool-1-thread-11] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw: [testng] 03:16:48,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 03:16:48,710 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:48,710 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-03-25_03-16-48.log] [testng] 03:16:48,711 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ce75244 - End of configuration. [testng] [2025-03-25 03:16:51,566] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW: [testng] 03:16:51,566 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 03:16:51,567 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:51,567 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-03-25_03-16-51.log] [testng] 03:16:51,567 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77e686a2 - End of configuration. [testng] [2025-03-25 03:16:54,459] [pool-1-thread-9] Initializing /data/samples/05-Sep-07_nyc_0531.mrw: [testng] 03:16:54,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 03:16:54,460 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:54,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-03-25_03-16-54.log] [testng] 03:16:54,460 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3850478f - End of configuration. [testng] [2025-03-25 03:16:57,030] [pool-1-thread-8] Initializing /data/samples/05-Sep-03_duperele_0472.mrw: [testng] 03:16:57,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 03:16:57,030 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:57,031 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-03-25_03-16-57.log] [testng] 03:16:57,031 |-INFO in ch.qos.logback.core.sift.SiftProcessor@16603330 - End of configuration. [testng] [2025-03-25 03:16:59,700] [pool-1-thread-7] Initializing /data/samples/05-Sep-14_sigma_0698.mrw: [testng] 03:16:59,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 03:16:59,701 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:16:59,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-03-25_03-16-59.log] [testng] 03:16:59,702 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26fcc203 - End of configuration. [testng] [2025-03-25 03:17:02,346] [pool-1-thread-6] Initializing /data/samples/400R PICT0003.MRW: [testng] 03:17:02,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 03:17:02,347 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:17:02,348 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-03-25_03-17-02.log] [testng] 03:17:02,349 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5fa7b1b7 - End of configuration. [testng] [2025-03-25 03:17:05,830] [pool-1-thread-5] Initializing /data/samples/3200R PICT0006.MRW: [testng] 03:17:05,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 03:17:05,831 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:17:05,831 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-03-25_03-17-05.log] [testng] 03:17:05,832 |-INFO in ch.qos.logback.core.sift.SiftProcessor@65041228 - End of configuration. [testng] [2025-03-25 03:17:08,949] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw: [testng] 03:17:08,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 03:17:08,949 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:17:08,950 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-03-25_03-17-08.log] [testng] 03:17:08,950 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26c20cae - End of configuration. [testng] [2025-03-25 03:17:11,572] [pool-1-thread-3] Initializing /data/samples/05-Sep-22_statua_0837.mrw: [testng] 03:17:11,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 03:17:11,572 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:17:11,573 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-03-25_03-17-11.log] [testng] 03:17:11,573 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fcef0b1 - End of configuration. [testng] [2025-03-25 03:17:14,725] [pool-1-thread-2] Initializing /data/samples/1600R PICT0005.MRW: [testng] 03:17:14,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 03:17:14,725 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 03:17:14,726 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-03-25_03-17-14.log] [testng] 03:17:14,726 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b2a2f3a - End of configuration. [testng] [2025-03-25 03:17:49,398] [pool-1-thread-10] Initializing /data/samples/800R PICT0010.MRW: [testng] [2025-03-25 03:17:53,109] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw: [testng] [2025-03-25 03:17:56,477] [pool-1-thread-3] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw: [testng] [2025-03-25 03:17:59,788] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0818.mrw: [testng] [2025-03-25 03:18:03,136] [pool-1-thread-7] Initializing /data/samples/05-Sep-22_statua_0800.mrw: [testng] [2025-03-25 03:18:06,424] [pool-1-thread-5] Initializing /data/samples/05-Aug-21_duperele_0353.mrw: [testng] [2025-03-25 03:18:10,007] [pool-1-thread-11] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1007, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 57 seconds Finished: SUCCESS