Started by upstream project "BIOFORMATS-test-repo" build number 43
originally caused by:
 Started by upstream project "Trigger" build number 50
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2915517748056688742.sh
+ '[' nikon-jp2 = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_6187_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
   [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
   [testng] File leak detector installed
   [testng] 02:35:59,970 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:35:59,971 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
   [testng] 02:35:59,971 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:35:59,972 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:35:59,972 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:35:59,973 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:35:59,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:35:59,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:35:59,973 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:35:59,974 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:35:59,974 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:35:59,975 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:36:00,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:36:00,298 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:36:00,323 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:36:00,324 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:36:00,330 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:36:00,330 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:36:00,330 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:36:00,331 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:36:00,331 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
   [testng] 02:36:00,331 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
   [testng] 02:36:00,332 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 359 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-24 02:36:00,342] [main] java.version = 17.0.2
   [testng] 02:36:00,345 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:36:00,346 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:00,422 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-24_02-36-00.log]
   [testng] 02:36:00,424 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
   [testng] [2024-04-24 02:36:00,426] [main] testng.directory = /data
   [testng] [2024-04-24 02:36:00,426] [main] testng.configDirectory = /config
   [testng] [2024-04-24 02:36:00,435] [main] testng.multiplier = 1.0
   [testng] [2024-04-24 02:36:00,436] [main] testng.in-memory = false
   [testng] [2024-04-24 02:36:00,436] [main] testng.allow-missing = false
   [testng] [2024-04-24 02:36:00,436] [main] user.language = en
   [testng] [2024-04-24 02:36:00,436] [main] user.country = ${user.country}
   [testng] [2024-04-24 02:36:00,436] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-24 02:36:00,997] [main] ----------------------------------------
   [testng] [2024-04-24 02:36:00,997] [main] Total files: 11
   [testng] [2024-04-24 02:36:00,997] [main] Scan time: 0.561 s (51 ms/file)
   [testng] [2024-04-24 02:36:00,997] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 11 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-24 02:36:02,832] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008B.tif: 
   [testng] 02:36:02,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:36:02,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:02,834 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-24_02-36-02.log]
   [testng] 02:36:02,835 |-INFO in ch.qos.logback.core.sift.SiftProcessor@254d8cfb - End of configuration.
   [testng] [2024-04-24 02:36:02,897] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008.jp2: 
   [testng] 02:36:02,897 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:36:02,898 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:02,899 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-24_02-36-02.log]
   [testng] 02:36:02,899 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6763c0ba - End of configuration.
   [testng] [2024-04-24 02:36:03,098] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed003.jpg: 
   [testng] 02:36:03,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:36:03,099 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:03,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-24_02-36-03.log]
   [testng] 02:36:03,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d99dd05 - End of configuration.
   [testng] [2024-04-24 02:36:03,189] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png: 
   [testng] 02:36:03,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:36:03,189 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:03,190 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-24_02-36-03.log]
   [testng] 02:36:03,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@796b6726 - End of configuration.
   [testng] [2024-04-24 02:36:03,202] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed004.tif: 
   [testng] 02:36:03,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:36:03,203 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:03,204 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-24_02-36-03.log]
   [testng] 02:36:03,204 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c14bf0 - End of configuration.
   [testng] [2024-04-24 02:36:03,297] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed008R.tif: 
   [testng] 02:36:03,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:36:03,297 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:03,299 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-24_02-36-03.log]
   [testng] 02:36:03,299 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d2b60e6 - End of configuration.
   [testng] [2024-04-24 02:36:03,406] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008BGR.tif: 
   [testng] 02:36:03,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:36:03,407 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:03,408 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-24_02-36-03.log]
   [testng] 02:36:03,409 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2c34c1af - End of configuration.
   [testng] [2024-04-24 02:36:03,519] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed007.gif: 
   [testng] 02:36:03,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:36:03,520 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:03,520 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-24_02-36-03.log]
   [testng] 02:36:03,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c78e36d - End of configuration.
   [testng] [2024-04-24 02:36:03,541] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed005.bmp: 
   [testng] 02:36:03,541 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:36:03,542 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:03,542 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-24_02-36-03.log]
   [testng] 02:36:03,543 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20571f81 - End of configuration.
   [testng] [2024-04-24 02:36:03,553] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed008G.tif: 
   [testng] 02:36:03,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:36:03,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:03,554 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-24_02-36-03.log]
   [testng] 02:36:03,554 |-INFO in ch.qos.logback.core.sift.SiftProcessor@702eeffd - End of configuration.
   [testng] [2024-04-24 02:36:03,653] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed001.jp2: 
   [testng] 02:36:03,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:36:03,653 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:36:03,654 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-24_02-36-03.log]
   [testng] 02:36:03,655 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20b26b23 - End of configuration.
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 583, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 26 seconds
Finished: SUCCESS