Started by upstream project "BIOFORMATS-test-repo" build number 44
originally caused by:
Started by upstream project "Trigger" build number 51
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins5779246596573992944.sh
+ '[' pcx = slidebook ']'
++ date +%u
+ '[' 4 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_6206_merge_ci -v /uod/idr/repos/curated/pcx:/data -v /uod/idr-scratch/merge-ci/curated/pcx:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] warning: [options] source value 8 is obsolete and will be removed in a future release
[javac] warning: [options] target value 8 is obsolete and will be removed in a future release
[javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options.
[javac] 4 warnings
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:21:01,615 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 01:21:01,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - No custom configurators were discovered as a service.
[testng] 01:21:01,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:01,617 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:21:01,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:21:01,618 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:21:01,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:21:01,618 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:01,619 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:21:01,619 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:21:01,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:21:01,620 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:21:01,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:21:01,771 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:21:01,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:21:01,794 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:21:01,800 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:21:01,801 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:21:01,801 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:21:01,801 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:21:01,801 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@d9345cd - End of configuration.
[testng] 01:21:01,802 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48aca48b - Registering current configuration as safe fallback point
[testng] 01:21:01,802 |-INFO in ch.qos.logback.classic.util.ContextInitializer@46fa7c39 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 183 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-25 01:21:01,810] [main] java.version = 21
[testng] 01:21:01,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:21:01,813 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:01,852 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-25_01-21-01.log]
[testng] 01:21:01,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@71687585 - End of configuration.
[testng] [2024-04-25 01:21:01,855] [main] testng.directory = /data
[testng] [2024-04-25 01:21:01,855] [main] testng.configDirectory = /config
[testng] [2024-04-25 01:21:01,863] [main] testng.multiplier = 1.0
[testng] [2024-04-25 01:21:01,864] [main] testng.in-memory = false
[testng] [2024-04-25 01:21:01,864] [main] testng.allow-missing = false
[testng] [2024-04-25 01:21:01,864] [main] user.language = en
[testng] [2024-04-25 01:21:01,864] [main] user.country = ${user.country}
[testng] [2024-04-25 01:21:01,864] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-25 01:21:02,291] [main] ----------------------------------------
[testng] [2024-04-25 01:21:02,291] [main] Total files: 36
[testng] [2024-04-25 01:21:02,291] [main] Scan time: 0.427 s (11 ms/file)
[testng] [2024-04-25 01:21:02,292] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 35 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-25 01:21:03,449] [pool-1-thread-1] Initializing /data/generated/mri-stack17.pcx:
[testng] 01:21:03,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:21:03,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,451 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-25_01-21-03.log]
[testng] 01:21:03,451 |-INFO in ch.qos.logback.core.sift.SiftProcessor@555f0293 - End of configuration.
[testng] [2024-04-25 01:21:03,468] [pool-1-thread-12] Initializing /data/generated/mri-stack15.pcx:
[testng] 01:21:03,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:21:03,468 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,469 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-25_01-21-03.log]
[testng] 01:21:03,470 |-INFO in ch.qos.logback.core.sift.SiftProcessor@43cde3e7 - End of configuration.
[testng] [2024-04-25 01:21:03,475] [pool-1-thread-11] Initializing /data/generated/mri-stack18.pcx:
[testng] 01:21:03,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:21:03,476 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-25_01-21-03.log]
[testng] 01:21:03,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41041080 - End of configuration.
[testng] [2024-04-25 01:21:03,487] [pool-1-thread-10] Initializing /data/generated/mri-stack20.pcx:
[testng] 01:21:03,487 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:21:03,488 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,488 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-25_01-21-03.log]
[testng] 01:21:03,489 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f395f6 - End of configuration.
[testng] [2024-04-25 01:21:03,499] [pool-1-thread-9] Initializing /data/josh/Screenshots/deltavision.pcx:
[testng] 01:21:03,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:21:03,499 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-25_01-21-03.log]
[testng] 01:21:03,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e7ef75b - End of configuration.
[testng] [2024-04-25 01:21:03,509] [pool-1-thread-8] Initializing /data/generated/mri-stack5.pcx:
[testng] 01:21:03,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:21:03,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-25_01-21-03.log]
[testng] 01:21:03,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ad44dc0 - End of configuration.
[testng] [2024-04-25 01:21:03,516] [pool-1-thread-7] Initializing /data/josh/Screenshots/fv1000color.pcx:
[testng] 01:21:03,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:21:03,516 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-25_01-21-03.log]
[testng] 01:21:03,517 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32ee1702 - End of configuration.
[testng] [2024-04-25 01:21:03,527] [pool-1-thread-6] Initializing /data/generated/mri-stack13.pcx:
[testng] 01:21:03,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:21:03,527 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,528 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-25_01-21-03.log]
[testng] 01:21:03,529 |-INFO in ch.qos.logback.core.sift.SiftProcessor@226c77dd - End of configuration.
[testng] [2024-04-25 01:21:03,534] [pool-1-thread-5] Initializing /data/generated/mri-stack7.pcx:
[testng] 01:21:03,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:21:03,535 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-25_01-21-03.log]
[testng] 01:21:03,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@505501df - End of configuration.
[testng] [2024-04-25 01:21:03,543] [pool-1-thread-4] Initializing /data/generated/mri-stack21.pcx:
[testng] 01:21:03,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:21:03,544 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,544 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-25_01-21-03.log]
[testng] 01:21:03,545 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74db2791 - End of configuration.
[testng] [2024-04-25 01:21:03,551] [pool-1-thread-3] Initializing /data/generated/mri-stack12.pcx:
[testng] 01:21:03,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:21:03,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,552 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-25_01-21-03.log]
[testng] 01:21:03,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58da4d70 - End of configuration.
[testng] [2024-04-25 01:21:03,557] [pool-1-thread-2] Initializing /data/generated/mri-stack11.pcx:
[testng] 01:21:03,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:21:03,558 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:21:03,558 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-25_01-21-03.log]
[testng] 01:21:03,559 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4fedd066 - End of configuration.
[testng] [2024-04-25 01:21:06,386] [pool-1-thread-11] Initializing /data/generated/mri-stack22.pcx:
[testng] [2024-04-25 01:21:06,392] [pool-1-thread-12] Initializing /data/generated/mri-stack26.pcx:
[testng] [2024-04-25 01:21:06,396] [pool-1-thread-2] Initializing /data/generated/mri-stack3.pcx:
[testng] [2024-04-25 01:21:06,400] [pool-1-thread-3] Initializing /data/generated/mri-stack19.pcx:
[testng] [2024-04-25 01:21:06,404] [pool-1-thread-6] Initializing /data/josh/Screenshots/Metamorph image-stack.pcx:
[testng] [2024-04-25 01:21:06,413] [pool-1-thread-5] Initializing /data/generated/mri-stack9.pcx:
[testng] [2024-04-25 01:21:06,419] [pool-1-thread-8] Initializing /data/generated/mri-stack25.pcx:
[testng] [2024-04-25 01:21:06,424] [pool-1-thread-1] Initializing /data/generated/mri-stack10.pcx:
[testng] [2024-04-25 01:21:06,429] [pool-1-thread-10] Initializing /data/josh/Screenshots/nd2 color.pcx:
[testng] [2024-04-25 01:21:06,438] [pool-1-thread-4] Initializing /data/generated/mri-stack23.pcx:
[testng] [2024-04-25 01:21:06,442] [pool-1-thread-9] Initializing /data/generated/mri-stack14.pcx:
[testng] [2024-04-25 01:21:06,446] [pool-1-thread-7] Initializing /data/josh/Screenshots/slidebooksamezposition.pcx:
[testng] [2024-04-25 01:21:06,685] [pool-1-thread-12] Initializing /data/josh/Screenshots/leica-lif.pcx:
[testng] [2024-04-25 01:21:06,690] [pool-1-thread-5] Initializing /data/generated/mri-stack8.pcx:
[testng] [2024-04-25 01:21:06,693] [pool-1-thread-8] Initializing /data/generated/mri-stack2.pcx:
[testng] [2024-04-25 01:21:06,695] [pool-1-thread-1] Initializing /data/josh/Screenshots/biorad color off.pcx:
[testng] [2024-04-25 01:21:06,749] [pool-1-thread-4] Initializing /data/generated/mri-stack1.pcx:
[testng] [2024-04-25 01:21:06,753] [pool-1-thread-11] Initializing /data/generated/mri-stack16.pcx:
[testng] [2024-04-25 01:21:06,756] [pool-1-thread-2] Initializing /data/josh/Screenshots/epscolor.pcx:
[testng] [2024-04-25 01:21:06,762] [pool-1-thread-9] Initializing /data/generated/mri-stack4.pcx:
[testng] [2024-04-25 01:21:06,766] [pool-1-thread-3] Initializing /data/generated/mri-stack0.pcx:
[testng] [2024-04-25 01:21:06,862] [pool-1-thread-8] Initializing /data/generated/mri-stack24.pcx:
[testng] [2024-04-25 01:21:06,879] [pool-1-thread-5] Initializing /data/generated/mri-stack6.pcx:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1855, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 8 seconds
Finished: SUCCESS