Started by upstream project "BIOFORMATS-test-repo" build number 394
originally caused by:
Started by upstream project "Trigger" build number 463
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@18
[BIOFORMATS-test-folder@18] $ /bin/bash -xe /tmp/jenkins2772019792341974710.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 3 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_62213_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:36:00,860 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 02:36:00,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
[testng] 02:36:00,861 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:36:00,862 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:36:00,862 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:36:00,863 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:36:00,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:36:00,863 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:36:00,864 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:36:00,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:36:00,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:36:00,865 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:36:01,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:36:01,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:36:01,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:36:01,051 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:36:01,057 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:36:01,057 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:36:01,057 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:36:01,058 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:36:01,058 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
[testng] 02:36:01,058 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
[testng] 02:36:01,058 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 194 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-05-07 02:36:01,067] [main] java.version = 17.0.2
[testng] 02:36:01,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:36:01,070 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:36:01,111 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-07_02-36-01.log]
[testng] 02:36:01,112 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
[testng] [2025-05-07 02:36:01,114] [main] testng.directory = /data
[testng] [2025-05-07 02:36:01,115] [main] testng.configDirectory = /config
[testng] [2025-05-07 02:36:01,123] [main] testng.multiplier = 1.0
[testng] [2025-05-07 02:36:01,124] [main] testng.in-memory = false
[testng] [2025-05-07 02:36:01,124] [main] testng.allow-missing = false
[testng] [2025-05-07 02:36:01,124] [main] user.language = en
[testng] [2025-05-07 02:36:01,124] [main] user.country = ${user.country}
[testng] [2025-05-07 02:36:01,124] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-05-07 02:36:18,285] [main] ----------------------------------------
[testng] [2025-05-07 02:36:18,285] [main] Total files: 16
[testng] [2025-05-07 02:36:18,285] [main] Scan time: 17.16 s (1072 ms/file)
[testng] [2025-05-07 02:36:18,285] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-05-07 02:37:44,383] [pool-1-thread-1] Initializing /data/samples/5358.afi:
[testng] 02:37:44,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:37:44,384 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:44,385 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-07_02-37-44.log]
[testng] 02:37:44,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e93f808 - End of configuration.
[testng] [2025-05-07 02:37:48,483] [pool-1-thread-12] Initializing /data/samples/5371.afi:
[testng] 02:37:48,483 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:37:48,492 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:48,493 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-07_02-37-48.log]
[testng] 02:37:48,494 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2aead771 - End of configuration.
[testng] [2025-05-07 02:37:52,352] [pool-1-thread-11] Initializing /data/samples/5306.afi:
[testng] 02:37:52,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:37:52,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:52,354 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-07_02-37-52.log]
[testng] 02:37:52,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@590c7ffe - End of configuration.
[testng] [2025-05-07 02:37:56,508] [pool-1-thread-10] Initializing /data/samples/5407.afi:
[testng] 02:37:56,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:37:56,508 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:37:56,509 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-07_02-37-56.log]
[testng] 02:37:56,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f8f4faa - End of configuration.
[testng] [2025-05-07 02:38:00,959] [pool-1-thread-9] Initializing /data/samples/5351.afi:
[testng] 02:38:00,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:38:00,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:00,960 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-07_02-38-00.log]
[testng] 02:38:00,961 |-INFO in ch.qos.logback.core.sift.SiftProcessor@548af19e - End of configuration.
[testng] [2025-05-07 02:38:05,666] [pool-1-thread-8] Initializing /data/samples/5440.afi:
[testng] 02:38:05,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:38:05,667 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:05,667 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-07_02-38-05.log]
[testng] 02:38:05,668 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5bd91c5d - End of configuration.
[testng] [2025-05-07 02:38:09,707] [pool-1-thread-7] Initializing /data/samples/5387.afi:
[testng] 02:38:09,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:38:09,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:09,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-07_02-38-09.log]
[testng] 02:38:09,710 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53139ab4 - End of configuration.
[testng] [2025-05-07 02:38:13,699] [pool-1-thread-6] Initializing /data/samples/5339.afi:
[testng] 02:38:13,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:38:13,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:13,701 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-07_02-38-13.log]
[testng] 02:38:13,701 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b7fc79 - End of configuration.
[testng] [2025-05-07 02:38:17,517] [pool-1-thread-5] Initializing /data/samples/5343.afi:
[testng] 02:38:17,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:38:17,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:17,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-07_02-38-17.log]
[testng] 02:38:17,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@207694ec - End of configuration.
[testng] [2025-05-07 02:38:21,399] [pool-1-thread-4] Initializing /data/samples/5446.afi:
[testng] 02:38:21,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:38:21,399 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:21,400 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-07_02-38-21.log]
[testng] 02:38:21,400 |-INFO in ch.qos.logback.core.sift.SiftProcessor@705ef7b4 - End of configuration.
[testng] [2025-05-07 02:38:25,270] [pool-1-thread-3] Initializing /data/samples/5400.afi:
[testng] 02:38:25,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:38:25,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:25,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-07_02-38-25.log]
[testng] 02:38:25,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da718ec - End of configuration.
[testng] [2025-05-07 02:38:32,023] [pool-1-thread-2] Initializing /data/samples/5347.afi:
[testng] 02:38:32,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:38:32,023 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:32,024 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-07_02-38-32.log]
[testng] 02:38:32,025 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5accc29 - End of configuration.
[testng] [2025-05-07 02:40:09,285] [pool-1-thread-11] Initializing /data/samples/5383.afi:
[testng] [2025-05-07 02:40:12,627] [pool-1-thread-3] Initializing /data/samples/5414.afi:
[testng] [2025-05-07 02:40:14,942] [pool-1-thread-1] Initializing /data/samples/5365.afi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 6 minutes 13 seconds
Finished: SUCCESS