Started by upstream project "BIOFORMATS-test-repo" build number 394 originally caused by: Started by upstream project "Trigger" build number 463 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8 [BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins18182685676573907521.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 3 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62217_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 02:56:07,022 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 02:56:07,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service. [testng] 02:56:07,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:56:07,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 02:56:07,024 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 02:56:07,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 02:56:07,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 02:56:07,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:56:07,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 02:56:07,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 02:56:07,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 02:56:07,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 02:56:07,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 02:56:07,221 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 02:56:07,244 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 02:56:07,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 02:56:07,250 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 02:56:07,251 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 02:56:07,251 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 02:56:07,251 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 02:56:07,251 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration. [testng] 02:56:07,252 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point [testng] 02:56:07,252 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 227 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-07 02:56:07,261] [main] java.version = 17.0.2 [testng] 02:56:07,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 02:56:07,265 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:56:07,315 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-07_02-56-07.log] [testng] 02:56:07,316 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration. [testng] [2025-05-07 02:56:07,319] [main] testng.directory = /data [testng] [2025-05-07 02:56:07,319] [main] testng.configDirectory = /config [testng] [2025-05-07 02:56:07,329] [main] testng.multiplier = 1.0 [testng] [2025-05-07 02:56:07,330] [main] testng.in-memory = false [testng] [2025-05-07 02:56:07,330] [main] testng.allow-missing = false [testng] [2025-05-07 02:56:07,330] [main] user.language = en [testng] [2025-05-07 02:56:07,330] [main] user.country = ${user.country} [testng] [2025-05-07 02:56:07,330] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-07 04:01:51,352] [main] ---------------------------------------- [testng] [2025-05-07 04:01:51,352] [main] Total files: 14121 [testng] [2025-05-07 04:01:51,352] [main] Scan time: 3944.022 s (279 ms/file) [testng] [2025-05-07 04:01:51,352] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 261 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-07 05:39:57,627] [pool-1-thread-1] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] 05:39:57,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 05:39:57,627 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:39:57,629 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-07_05-39-57.log] [testng] 05:39:57,629 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5da52e4 - End of configuration. [testng] [2025-05-07 05:40:09,848] [pool-1-thread-12] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] 05:40:09,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 05:40:09,848 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:40:09,849 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-07_05-40-09.log] [testng] 05:40:09,850 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6084282 - End of configuration. [testng] [2025-05-07 05:40:14,539] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] 05:40:14,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 05:40:14,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:40:14,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-07_05-40-14.log] [testng] 05:40:14,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7661f946 - End of configuration. [testng] [2025-05-07 05:40:26,279] [pool-1-thread-10] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] 05:40:26,279 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 05:40:26,280 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:40:26,280 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-07_05-40-26.log] [testng] 05:40:26,280 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7d9cf7c3 - End of configuration. [testng] [2025-05-07 05:40:35,048] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] 05:40:35,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 05:40:35,048 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:40:35,049 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-07_05-40-35.log] [testng] 05:40:35,049 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2bb31a89 - End of configuration. [testng] [2025-05-07 05:40:43,827] [pool-1-thread-8] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment5_w1DUAL 491-561_t1.TIF: [testng] 05:40:43,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 05:40:43,827 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:40:43,828 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-07_05-40-43.log] [testng] 05:40:43,828 |-INFO in ch.qos.logback.core.sift.SiftProcessor@238c1aa5 - End of configuration. [testng] [2025-05-07 05:40:59,678] [pool-1-thread-7] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] 05:40:59,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 05:40:59,678 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:40:59,679 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-07_05-40-59.log] [testng] 05:40:59,679 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3e4c768e - End of configuration. [testng] [2025-05-07 05:41:08,657] [pool-1-thread-6] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] 05:41:08,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 05:41:08,657 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:08,658 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-07_05-41-08.log] [testng] 05:41:08,658 |-INFO in ch.qos.logback.core.sift.SiftProcessor@478fb886 - End of configuration. [testng] [2025-05-07 05:41:44,619] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish6_w1FRET_s1_t1.TIF: [testng] 05:41:44,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 05:41:44,620 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:41:44,620 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-07_05-41-44.log] [testng] 05:41:44,620 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6afd7e4 - End of configuration. [testng] [2025-05-07 05:42:54,038] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] 05:42:54,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 05:42:54,039 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:42:54,039 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-07_05-42-54.log] [testng] 05:42:54,040 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b82b856 - End of configuration. [testng] [2025-05-07 05:43:04,474] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] 05:43:04,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 05:43:04,474 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:43:04,474 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-07_05-43-04.log] [testng] 05:43:04,475 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f07dff6 - End of configuration. [testng] [2025-05-07 05:43:11,360] [pool-1-thread-2] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] 05:43:11,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 05:43:11,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 05:43:11,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-07_05-43-11.log] [testng] 05:43:11,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1cfd1abf - End of configuration. [testng] [2025-05-07 05:44:01,995] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2025-05-07 05:44:12,558] [pool-1-thread-2] Used files list does not include base file [testng] [2025-05-07 05:44:12,785] [pool-1-thread-3] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2025-05-07 05:44:23,634] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2025-05-07 05:44:34,301] [pool-1-thread-10] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2025-05-07 05:44:59,510] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2025-05-07 05:45:10,176] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1F_ISOto5HT_4well/Dish5_w1FRET_s1_t1.TIF: [testng] [2025-05-07 05:47:01,097] [pool-1-thread-12] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] [2025-05-07 05:47:32,794] [pool-1-thread-2] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2025-05-07 05:47:41,384] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-05-07 05:48:22,040] [pool-1-thread-12] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish4_w1FRET_t1.TIF: [testng] [2025-05-07 05:48:57,822] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-07 05:49:10,434] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 05:49:46,667] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2025-05-07 05:50:02,837] [pool-1-thread-2] Used files list does not include base file [testng] [2025-05-07 05:50:05,706] [pool-1-thread-1] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2025-05-07 05:51:01,158] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-07 05:52:36,617] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2025-05-07 05:53:41,445] [pool-1-thread-3] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2025-05-07 05:53:46,411] [pool-1-thread-7] Initializing /data/thomas/test.tif: [testng] [2025-05-07 05:54:44,518] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2025-05-07 05:54:55,284] [pool-1-thread-7] Used files list does not include base file [testng] [2025-05-07 05:54:55,399] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2025-05-07 05:55:51,698] [pool-1-thread-3] Initializing /data/ascb/mt aim.tif: [testng] [2025-05-07 05:56:47,494] [pool-1-thread-3] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2025-05-07 05:57:58,011] [pool-1-thread-3] Initializing /data/doil/001-23 dapi.stk: [testng] [2025-05-07 05:59:03,488] [pool-1-thread-2] Initializing /data/qa-16887/m-01.tif: [testng] [2025-05-07 05:59:30,958] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2025-05-07 06:00:15,599] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2025-05-07 06:01:07,611] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2025-05-07 06:01:55,348] [pool-1-thread-7] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2025-05-07 06:02:10,364] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2025-05-07 06:03:01,751] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 06:03:46,148] [pool-1-thread-2] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2025-05-07 06:06:02,751] [pool-1-thread-3] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2025-05-07 06:06:55,728] [pool-1-thread-3] Initializing /data/samples/diatoms3d.stk: [testng] [2025-05-07 06:07:45,290] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_Vec_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-07 06:08:40,965] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-07 06:30:51,819] [pool-1-thread-4] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2025-05-07 06:31:16,184] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2025-05-07 06:31:49,155] [pool-1-thread-4] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-05-07 06:32:03,574] [pool-1-thread-9] Initializing /data/ascb/RNA dye MT 2.tif: [testng] [2025-05-07 06:32:27,197] [pool-1-thread-12] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2025-05-07 06:32:58,721] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2025-05-07 06:33:07,141] [pool-1-thread-9] Used files list does not include base file [testng] [2025-05-07 06:34:27,706] [pool-1-thread-4] Initializing /data/ascb/C9 Stack.tif: [testng] [2025-05-07 06:34:54,336] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2025-05-07 06:35:07,563] [pool-1-thread-12] Used files list does not include base file [testng] [2025-05-07 06:35:07,819] [pool-1-thread-9] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2025-05-07 06:35:40,506] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 06:37:12,963] [pool-1-thread-9] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_Vec_ISOto5HT_4well/Dish2_w1FRET_s1_t1.TIF: [testng] [2025-05-07 06:41:44,177] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2025-05-07 06:42:31,258] [pool-1-thread-12] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2025-05-07 06:43:14,385] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2025-05-07 06:43:20,585] [pool-1-thread-12] Initializing /data/chris/Foo/exp1_w1_s1_t1.tif: [testng] [2025-05-07 06:45:31,416] [pool-1-thread-2] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2025-05-07 06:46:14,303] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2025-05-07 06:46:23,970] [pool-1-thread-7] Used files list does not include base file [testng] [2025-05-07 06:46:28,240] [pool-1-thread-2] Initializing /data/aaron/metamorph.stk: [testng] [2025-05-07 06:47:16,829] [pool-1-thread-2] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2025-05-07 06:48:45,498] [pool-1-thread-3] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2025-05-07 06:49:16,589] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2025-05-07 06:49:49,991] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-05-07 06:51:12,290] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2025-05-07 06:51:53,443] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-07 06:52:18,115] [pool-1-thread-7] Initializing /data/samples/zser24.stk: [testng] [2025-05-07 06:52:59,695] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish7_w1FRET_s1_t1.TIF: [testng] [2025-05-07 07:01:13,136] [pool-1-thread-3] Initializing /data/josh/2101to400bstk.stk: [testng] [2025-05-07 07:07:31,250] [pool-1-thread-4] Initializing /data/qa-16915/m-01.tif: [testng] [2025-05-07 07:08:16,809] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 07:09:25,947] [pool-1-thread-6] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2025-05-07 07:10:10,370] [pool-1-thread-6] Initializing /data/sebastien-besson/A._WTChlor.2.nd_[Stage1__Position52_]/A. WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2025-05-07 07:15:43,067] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2025-05-07 07:16:47,719] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2025-05-07 07:17:04,197] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2025-05-07 07:17:30,811] [pool-1-thread-2] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2025-05-07 07:17:50,154] [pool-1-thread-3] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2025-05-07 07:17:57,484] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-05-07 07:18:49,415] [pool-1-thread-3] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2025-05-07 07:19:07,965] [pool-1-thread-10] Initializing /data/jerome/deconv.STK: [testng] [2025-05-07 07:19:34,240] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2025-05-07 07:19:41,942] [pool-1-thread-10] Used files list does not include base file [testng] [2025-05-07 07:20:20,694] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/HCl/Dish2_w1FRET_t1.TIF: [testng] [2025-05-07 07:20:52,642] [pool-1-thread-8] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2025-05-07 07:24:50,675] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2025-05-07 07:25:03,890] [pool-1-thread-10] Used files list does not include base file [testng] [2025-05-07 07:31:58,849] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-07 07:32:42,007] [pool-1-thread-8] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2025-05-07 07:37:03,973] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-05-07 07:37:51,719] [pool-1-thread-8] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2025-05-07 07:38:38,547] [pool-1-thread-8] Initializing /data/samples/zserEight.stk: [testng] [2025-05-07 07:39:18,624] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] [2025-05-07 07:41:29,556] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1B_ISOto5HT_4well/Dish2_w1FRET_s1_t1.TIF: [testng] [2025-05-07 07:43:22,634] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] [2025-05-07 08:00:40,781] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] [2025-05-07 08:01:11,230] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1E_ISOto5HT_4well/Dish4_w1FRET_s1_t1.TIF: [testng] [2025-05-07 08:16:07,397] [pool-1-thread-10] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2025-05-07 08:17:46,327] [pool-1-thread-10] Initializing /data/steve/Experiment2.stk: [testng] [2025-05-07 08:19:18,633] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2025-05-07 08:24:01,714] [pool-1-thread-10] Initializing /data/grant/XYZ_Image.STK: [testng] [2025-05-07 08:25:03,417] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_4well/Dish10_w1FRET_s1_t1.TIF: [testng] [2025-05-07 08:26:53,252] [pool-1-thread-4] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2025-05-07 08:28:27,713] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2025-05-07 08:28:38,057] [pool-1-thread-4] Used files list does not include base file [testng] [2025-05-07 08:29:00,463] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish8_w1FRET_s1_t1.TIF: [testng] [2025-05-07 08:30:00,158] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] 08:30:01,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 08:30:01,391 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 08:30:01,391 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-07_08-30-01.log] [testng] 08:30:01,392 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72e4d7af - End of configuration. [testng] [2025-05-07 08:31:46,327] [pool-1-thread-11] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2025-05-07 08:32:26,395] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2025-05-07 08:33:53,407] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_4well/Dish6_w1FRET_s1_t1.TIF: [testng] [2025-05-07 08:34:56,074] [pool-1-thread-4] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2025-05-07 08:36:32,070] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2025-05-07 08:42:42,596] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2025-05-07 08:43:24,637] [pool-1-thread-4] Initializing /data/jacques/Repositionnement/Repositionnement_s1_t1.TIF: [testng] [2025-05-07 08:49:34,496] [pool-1-thread-4] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2025-05-07 08:50:33,085] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2025-05-07 08:52:28,806] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-07 08:59:20,895] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish2_w1FRET_s1_t1.TIF: [testng] 09:05:05,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 09:05:05,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 09:05:05,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-07_09-05-05.log] [testng] 09:05:05,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a72eb7e - End of configuration. [testng] [2025-05-07 10:12:50,515] [pool-1-thread-9] Initializing /data/qa-16915/m-02.tif: [testng] [2025-05-07 10:18:11,161] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.jpg: [testng] [2025-05-07 10:20:43,649] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2025-05-07 10:26:53,832] [pool-1-thread-9] Initializing /data/chris/exp1_w2CSU RED_s3_t003.stk: [testng] 10:31:13,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:31:13,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:31:13,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-07_10-31-13.log] [testng] 10:31:13,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@460bfcc3 - End of configuration. [testng] [2025-05-07 10:33:19,793] [pool-1-thread-9] Initializing /data/thomas/t_test2001.tif: [testng] [2025-05-07 10:38:50,408] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2025-05-07 10:41:34,883] [pool-1-thread-9] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2025-05-07 10:46:14,934] [pool-1-thread-9] Initializing /data/sebastien-besson/001/120119_VimMito_001_w1DIC_t1.TIF: [testng] 10:47:22,320 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:47:22,321 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:47:22,321 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-07_10-47-22.log] [testng] 10:47:22,321 |-INFO in ch.qos.logback.core.sift.SiftProcessor@349724b0 - End of configuration. [testng] 10:57:23,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:57:23,560 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:57:23,561 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-07_10-57-23.log] [testng] 10:57:23,561 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f54139b - End of configuration. [testng] [2025-05-07 10:59:07,559] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 11:05:07,180] [pool-1-thread-7] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2025-05-07 11:06:55,364] [pool-1-thread-7] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2025-05-07 11:08:27,939] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] 11:31:46,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 11:31:46,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 11:31:46,112 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-07_11-31-46.log] [testng] 11:31:46,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3f8caa9f - End of configuration. [testng] [2025-05-07 11:47:18,240] [pool-1-thread-6] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2025-05-07 11:48:04,006] [pool-1-thread-6] Initializing /data/josh/2101to600b.stk: [testng] [2025-05-07 11:49:18,814] [pool-1-thread-2] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2025-05-07 11:51:30,655] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_Vec_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 11:53:47,149] [pool-1-thread-7] Initializing /data/qa-16915/m-04-488.tif: [testng] [2025-05-07 11:54:42,612] [pool-1-thread-7] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2025-05-07 11:55:58,933] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR1D_ISOto5HT_35mmdish/Dish3_w1FRET_t1.TIF: [testng] [2025-05-07 11:57:47,437] [pool-1-thread-6] Initializing /data/josh/2101to400astk.stk: [testng] [2025-05-07 12:09:58,464] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-07 12:16:06,434] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1E_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: [testng] 12:28:57,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 12:28:57,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 12:28:57,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-07_12-28-57.log] [testng] 12:28:57,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@58c4cc8 - End of configuration. [testng] [2025-05-07 12:35:29,205] [pool-1-thread-3] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2025-05-07 12:35:41,181] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 12:36:35,803] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] [2025-05-07 12:39:39,743] [pool-1-thread-7] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2025-05-07 12:40:35,266] [pool-1-thread-7] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2025-05-07 12:41:32,042] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_Vec_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 12:42:33,811] [pool-1-thread-3] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2025-05-07 12:43:21,412] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] [2025-05-07 12:44:15,051] [pool-1-thread-3] Initializing /data/samples/zserSixteen.stk: [testng] [2025-05-07 12:45:02,683] [pool-1-thread-3] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2025-05-07 12:47:08,821] [pool-1-thread-3] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR1A_ISOto5HT_4well/Dish1_w1FRET_s1_t1.TIF: [testng] [2025-05-07 12:51:03,335] [pool-1-thread-6] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2025-05-07 12:54:07,586] [pool-1-thread-6] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2025-05-07 12:56:22,871] [pool-1-thread-6] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2025-05-07 12:57:33,100] [pool-1-thread-10] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2025-05-07 12:58:47,354] [pool-1-thread-6] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211123_HTR5_ISOto5HT_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-05-07 13:00:42,974] [pool-1-thread-8] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2025-05-07 13:01:54,541] [pool-1-thread-8] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2025-05-07 13:07:19,505] [pool-1-thread-5] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2025-05-07 13:07:33,493] [pool-1-thread-5] Used files list does not include base file [testng] [2025-05-07 13:11:40,945] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2025-05-07 13:12:25,926] [pool-1-thread-5] Used files list does not include base file [testng] [2025-05-07 13:21:09,377] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 13:30:47,443] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_Vec_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-07 13:40:44,817] [pool-1-thread-10] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-07 13:41:29,174] [pool-1-thread-8] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] [2025-05-07 13:42:37,804] [pool-1-thread-2] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-05-07 13:43:52,579] [pool-1-thread-8] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2025-05-07 13:47:26,718] [pool-1-thread-10] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2025-05-07 13:52:38,025] [pool-1-thread-8] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD2_ISOtoDA_4well/Dish1(ISO200nM)_w1FRET_s1_t1.TIF: [testng] [2025-05-07 13:56:07,773] [pool-1-thread-2] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2025-05-07 13:58:32,674] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2025-05-07 14:00:42,838] [pool-1-thread-2] Initializing /data/grant/X.STK: [testng] [2025-05-07 14:04:14,865] [pool-1-thread-7] Initializing /data/ascb/golgi marker 2.tif: [testng] [2025-05-07 14:05:12,800] [pool-1-thread-10] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2025-05-07 14:05:56,914] [pool-1-thread-2] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2025-05-07 14:09:52,254] [pool-1-thread-7] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2025-05-07 14:20:54,744] [pool-1-thread-7] Initializing /data/graham/G_Wright raw.stk: [testng] [2025-05-07 14:21:34,207] [pool-1-thread-10] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] [2025-05-07 14:22:10,758] [pool-1-thread-2] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2025-05-07 14:24:10,493] [pool-1-thread-7] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2025-05-07 14:25:01,246] [pool-1-thread-7] Used files list does not include base file [testng] [2025-05-07 14:25:56,457] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211115_HTR5_ISOto5HT_35mmdish/5HT/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 14:29:42,892] [pool-1-thread-10] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2025-05-07 14:31:22,984] [pool-1-thread-4] Initializing /data/qa-16915/m-04.tif: [testng] [2025-05-07 14:36:47,372] [pool-1-thread-4] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD4_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 14:38:46,615] [pool-1-thread-10] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2025-05-07 14:43:13,951] [pool-1-thread-10] Initializing /data/ascb/mt mklp1.tif: [testng] [2025-05-07 14:46:46,946] [pool-1-thread-10] Initializing /data/heiko/sample_3x3.stk: [testng] [2025-05-07 14:51:14,692] [pool-1-thread-10] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2025-05-07 14:55:41,161] [pool-1-thread-10] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2025-05-07 14:56:55,884] [pool-1-thread-10] Used files list does not include base file [testng] [2025-05-07 14:57:48,687] [pool-1-thread-7] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_DRD3_ISOtoDA_4well/Dish9_w1FRET_s1_t1.TIF: [testng] [2025-05-07 15:29:51,323] [pool-1-thread-10] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] [2025-05-07 15:35:32,889] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211122_HTR5_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] 15:39:42,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 15:39:42,793 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:39:42,794 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-07_15-39-42.log] [testng] 15:39:42,794 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67b510c2 - End of configuration. [testng] 15:50:55,885 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 15:50:55,886 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:50:55,886 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-07_15-50-55.log] [testng] 15:50:55,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6acc234e - End of configuration. [testng] 15:57:02,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 15:57:02,381 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 15:57:02,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-07_15-57-02.log] [testng] 15:57:02,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64effebd - End of configuration. [testng] [2025-05-07 16:12:50,434] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-07 16:16:29,049] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2025-05-07 16:20:42,983] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2025-05-07 16:27:30,990] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2025-05-07 16:30:10,611] [pool-1-thread-12] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-07 16:35:52,688] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2025-05-07 16:44:01,197] [pool-1-thread-11] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2025-05-07 16:48:24,513] [pool-1-thread-5] Initializing /data/ascb/C1 Stack.stk: [testng] [2025-05-07 16:50:00,128] [pool-1-thread-12] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2025-05-07 16:51:04,460] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2025-05-07 16:52:12,870] [pool-1-thread-11] Used files list does not include base file [testng] [2025-05-07 16:55:18,392] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2025-05-07 17:02:44,315] [pool-1-thread-12] Initializing /data/josh/2101to600astk.stk: [testng] 17:10:11,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 17:10:11,339 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:10:11,339 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-07_17-10-11.log] [testng] 17:10:11,340 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ea4cf9d - End of configuration. [testng] [2025-05-07 17:21:05,817] [pool-1-thread-11] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] 17:22:37,981 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 17:22:37,982 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 17:22:37,982 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-07_17-22-37.log] [testng] 17:22:37,982 |-INFO in ch.qos.logback.core.sift.SiftProcessor@540a25f8 - End of configuration. [testng] [2025-05-07 17:26:32,072] [pool-1-thread-5] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] [2025-05-07 17:31:49,705] [pool-1-thread-5] Initializing /data/josh/2101to600f.stk: [testng] [2025-05-07 17:48:57,252] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2025-05-07 18:01:26,421] [pool-1-thread-11] Initializing /data/dave/Z Series.stk: [testng] [2025-05-07 18:05:58,602] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2025-05-07 18:07:11,584] [pool-1-thread-11] Used files list does not include base file [testng] [2025-05-07 18:26:39,676] [pool-1-thread-2] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2025-05-07 18:31:55,394] [pool-1-thread-2] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2025-05-07 18:36:24,491] [pool-1-thread-2] Initializing /data/josh/2101to600e.stk: [testng] [2025-05-07 18:42:47,665] [pool-1-thread-5] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2025-05-07 18:45:44,343] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2025-05-07 18:46:39,318] [pool-1-thread-4] Initializing /data/samples/10xcalib.tif: [testng] [2025-05-07 18:51:16,377] [pool-1-thread-11] Initializing /data/samples/10xcalib.stk: [testng] [2025-05-07 18:52:34,902] [pool-1-thread-4] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2025-05-07 18:57:51,475] [pool-1-thread-11] Initializing /data/ascb/golgi marker.tif: [testng] [2025-05-07 19:04:11,165] [pool-1-thread-11] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211116_Vec_ISOtoDA_35mmdish/Dish1_w1FRET_t1.TIF: [testng] [2025-05-07 19:08:45,722] [pool-1-thread-4] Initializing /data/david/tl4.tif: [testng] [2025-05-07 19:16:47,177] [pool-1-thread-4] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] 19:18:01,539 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 19:18:01,540 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 19:18:01,540 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-07_19-18-01.log] [testng] 19:18:01,540 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25b052d3 - End of configuration. [testng] [2025-05-07 19:18:42,954] [pool-1-thread-4] Used files list does not include base file [testng] [2025-05-07 19:18:43,868] [pool-1-thread-2] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211202_HTR1E_ISOto5HT_4well/Dish3_w1FRET_s1_t1.TIF: [testng] [2025-05-07 19:29:33,211] [pool-1-thread-12] Initializing /data/samples/zseries.stk: [testng] [2025-05-07 19:31:39,335] [pool-1-thread-5] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2025-05-07 19:37:54,607] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2025-05-07 19:50:14,498] [pool-1-thread-5] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2025-05-07 19:51:21,678] [pool-1-thread-5] Used files list does not include base file [testng] [2025-05-07 20:06:55,114] [pool-1-thread-10] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2025-05-07 20:18:08,636] [pool-1-thread-4] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2025-05-07 20:20:48,911] [pool-1-thread-10] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211111_HTR5_ISOto5HT_35mmdish/Dish2_w1FRET_t1.TIF: [testng] [2025-05-07 20:24:22,979] [pool-1-thread-4] Initializing /data/cumol-test-series/23.001: [testng] [2025-05-07 20:31:15,858] [pool-1-thread-5] Initializing /data/public/ssbd-repos-000232/FigureS2/TIFF/20211203_HTR1F_ISOto5HT_35mm/Dish2_w1FRET_t1.TIF: Build was aborted Calling Pipeline was cancelled Finished: ABORTED