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Started by upstream project "BIOFORMATS-test-repo" build number 395 originally caused by: Started by upstream project "Trigger" build number 479 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@19 [BIOFORMATS-test-folder@19] $ /bin/bash -xe /tmp/jenkins1279938100551623229.sh + '[' biorad-gel = slidebook ']' ++ date +%u + '[' 4 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62432_merge_ci -v /uod/idr/repos/curated/biorad-gel:/data -v /uod/idr-scratch/merge-ci/curated/biorad-gel:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] warning: [options] source value 8 is obsolete and will be removed in a future release [javac] warning: [options] target value 8 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] 4 warnings test-automated: [testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket [testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket [testng] File leak detector installed [testng] 04:07:09,020 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 04:07:09,022 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - No custom configurators were discovered as a service. [testng] 04:07:09,022 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:07:09,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 04:07:09,023 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 04:07:09,023 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 04:07:09,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 04:07:09,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:07:09,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 04:07:09,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 04:07:09,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 04:07:09,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 04:07:09,179 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 04:07:09,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 04:07:09,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 04:07:09,204 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 04:07:09,210 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 04:07:09,210 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 04:07:09,210 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 04:07:09,211 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 04:07:09,211 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@4310d43 - End of configuration. [testng] 04:07:09,212 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@1b11171f - Registering current configuration as safe fallback point [testng] 04:07:09,212 |-INFO in ch.qos.logback.classic.util.ContextInitializer@36d585c - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 188 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-15 04:07:09,221] [main] java.version = 21 [testng] 04:07:09,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 04:07:09,224 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:07:09,265 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-15_04-07-09.log] [testng] 04:07:09,266 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69504ae9 - End of configuration. [testng] [2025-05-15 04:07:09,268] [main] testng.directory = /data [testng] [2025-05-15 04:07:09,268] [main] testng.configDirectory = /config [testng] [2025-05-15 04:07:09,277] [main] testng.multiplier = 1.0 [testng] [2025-05-15 04:07:09,278] [main] testng.in-memory = false [testng] [2025-05-15 04:07:09,278] [main] testng.allow-missing = false [testng] [2025-05-15 04:07:09,278] [main] user.language = en [testng] [2025-05-15 04:07:09,278] [main] user.country = ${user.country} [testng] [2025-05-15 04:07:09,278] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-15 04:07:22,424] [main] ---------------------------------------- [testng] [2025-05-15 04:07:22,424] [main] Total files: 32 [testng] [2025-05-15 04:07:22,424] [main] Scan time: 13.146 s (410 ms/file) [testng] [2025-05-15 04:07:22,425] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 32 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-15 04:09:02,411] [pool-1-thread-1] Initializing /data/adrian/test_img.1sc: [testng] 04:09:02,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 04:09:02,412 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:02,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-15_04-09-02.log] [testng] 04:09:02,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1883e1a1 - End of configuration. [testng] [2025-05-15 04:09:04,846] [pool-1-thread-12] Initializing /data/qa-29469/good.1sc: [testng] 04:09:04,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 04:09:04,846 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:04,847 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-15_04-09-04.log] [testng] 04:09:04,847 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41395d90 - End of configuration. [testng] [2025-05-15 04:09:07,142] [pool-1-thread-11] Initializing /data/geert/bad example1.1sc: [testng] 04:09:07,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 04:09:07,142 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:07,143 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-15_04-09-07.log] [testng] 04:09:07,144 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ec122c8 - End of configuration. [testng] [2025-05-15 04:09:09,399] [pool-1-thread-10] Initializing /data/david/Converted in Quantity One (Biorad).tiff: [testng] 04:09:09,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 04:09:09,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:09,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-15_04-09-09.log] [testng] 04:09:09,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@59f16c79 - End of configuration. [testng] [2025-05-15 04:09:16,630] [pool-1-thread-9] Initializing /data/keith/test.1sc: [testng] 04:09:16,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 04:09:16,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:16,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-15_04-09-16.log] [testng] 04:09:16,631 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1df60ad9 - End of configuration. [testng] [2025-05-15 04:09:18,609] [pool-1-thread-8] Initializing /data/sylvain/2009-10-26 14hr 59min: [testng] 04:09:18,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 04:09:18,609 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:18,610 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-15_04-09-18.log] [testng] 04:09:18,611 |-INFO in ch.qos.logback.core.sift.SiftProcessor@73bb9f56 - End of configuration. [testng] [2025-05-15 04:09:20,932] [pool-1-thread-7] Initializing /data/sylvain/2009-10-26 14hr 56min.tif: [testng] 04:09:20,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 04:09:20,932 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:20,933 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-15_04-09-20.log] [testng] 04:09:20,933 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2a592f6f - End of configuration. [testng] [2025-05-15 04:09:29,097] [pool-1-thread-6] Initializing /data/geert/bad example1.1sc.jpg: [testng] 04:09:29,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 04:09:29,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:29,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-15_04-09-29.log] [testng] 04:09:29,099 |-INFO in ch.qos.logback.core.sift.SiftProcessor@277833 - End of configuration. [testng] [2025-05-15 04:09:29,871] [pool-1-thread-5] Initializing /data/sylvain/2009-10-26 14hr 56min: [testng] 04:09:29,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 04:09:29,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:29,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-15_04-09-29.log] [testng] 04:09:29,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e595963 - End of configuration. [testng] [2025-05-15 04:09:32,257] [pool-1-thread-4] Initializing /data/david/Original Biorad Gel format file.1sc: [testng] 04:09:32,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 04:09:32,257 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:32,258 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-15_04-09-32.log] [testng] 04:09:32,258 |-INFO in ch.qos.logback.core.sift.SiftProcessor@114b721c - End of configuration. [testng] [2025-05-15 04:09:34,517] [pool-1-thread-3] Initializing /data/qa-29469/bad2.1sc: [testng] 04:09:34,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 04:09:34,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:34,518 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-15_04-09-34.log] [testng] 04:09:34,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1b83b17b - End of configuration. [testng] [2025-05-15 04:09:36,514] [pool-1-thread-2] Initializing /data/qa-29469/bad3.1sc: [testng] 04:09:36,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 04:09:36,515 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 04:09:36,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-15_04-09-36.log] [testng] 04:09:36,516 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e248698 - End of configuration. [testng] [2025-05-15 04:09:54,416] [pool-1-thread-9] Initializing /data/qa-16880/c-src v7.1sc: [testng] [2025-05-15 04:09:56,791] [pool-1-thread-3] Initializing /data/sylvain/2009-10-23 12hr 19min: [testng] [2025-05-15 04:09:59,232] [pool-1-thread-2] Initializing /data/keith/pg020410saur3.1sc: [testng] [2025-05-15 04:10:01,291] [pool-1-thread-4] Initializing /data/sylvain/2009-10-23 12hr 19min.tif: [testng] [2025-05-15 04:10:08,741] [pool-1-thread-12] Initializing /data/qa-29459/bad.1sc: [testng] [2025-05-15 04:10:10,801] [pool-1-thread-8] Initializing /data/geert/good example1.1sc: [testng] [2025-05-15 04:10:12,924] [pool-1-thread-5] Initializing /data/geert/bad example1.jpg: [testng] [2025-05-15 04:10:13,685] [pool-1-thread-6] Initializing /data/sylvain/2009-10-23 12hr 18min: [testng] [2025-05-15 04:10:15,914] [pool-1-thread-1] Initializing /data/sylvain/2009-10-23 12hr 18min.tif: [testng] [2025-05-15 04:10:23,426] [pool-1-thread-11] Initializing /data/keith/PF020426MRSA v2.1sc: [testng] [2025-05-15 04:10:37,431] [pool-1-thread-2] Initializing /data/sylvain/2009-10-26 14hr 59min.tif: [testng] [2025-05-15 04:10:45,122] [pool-1-thread-11] Initializing /data/samples/Criterion.1sc: [testng] [2025-05-15 04:10:47,312] [pool-1-thread-6] Initializing /data/geert/good example1.1sc.jpg: [testng] [2025-05-15 04:10:47,965] [pool-1-thread-3] Initializing /data/keith/test2.1sc: [testng] [2025-05-15 04:10:49,867] [pool-1-thread-8] Initializing /data/samples/imagesEight.1sc: [testng] [2025-05-15 04:10:51,947] [pool-1-thread-10] Initializing /data/keith/PF020328saur v3.1sc: [testng] [2025-05-15 04:10:54,192] [pool-1-thread-12] Initializing /data/sylvain/2009-10-26 14hr 57min.tif: [testng] [2025-05-15 04:11:02,389] [pool-1-thread-9] Initializing /data/sylvain/2009-10-26 14hr 57min: [testng] [2025-05-15 04:11:04,799] [pool-1-thread-5] Initializing /data/qa-29459/bad.jpg: [testng] [2025-05-15 04:11:05,501] [pool-1-thread-7] Initializing /data/david/Opened in imageJ.tiff: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1696, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 4 minutes 49 seconds Finished: SUCCESS