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Started by upstream project "BIOFORMATS-test-repo" build number 396 originally caused by: Started by upstream project "Trigger" build number 480 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@18 [BIOFORMATS-test-folder@18] $ /bin/bash -xe /tmp/jenkins5336996550471770834.sh + '[' specs = slidebook ']' ++ date +%u + '[' 5 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62490_merge_ci -v /uod/idr/repos/curated/specs:/data -v /uod/idr-scratch/merge-ci/curated/specs:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:44:53,793 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 01:44:53,795 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service. [testng] 01:44:53,795 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:44:53,796 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:44:53,796 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:44:53,796 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:44:53,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:44:53,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:44:53,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:44:53,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:44:53,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:44:53,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:44:54,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:44:54,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:44:54,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:44:54,078 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:44:54,088 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:44:54,088 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:44:54,088 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:44:54,088 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:44:54,089 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration. [testng] 01:44:54,089 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point [testng] 01:44:54,090 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 293 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-16 01:44:54,100] [main] java.version = 1.8.0_342 [testng] 01:44:54,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:44:54,104 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:44:54,156 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-16_01-44-54.log] [testng] 01:44:54,158 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration. [testng] [2025-05-16 01:44:54,161] [main] testng.directory = /data [testng] [2025-05-16 01:44:54,161] [main] testng.configDirectory = /config [testng] [2025-05-16 01:44:54,174] [main] testng.multiplier = 1.0 [testng] [2025-05-16 01:44:54,175] [main] testng.in-memory = false [testng] [2025-05-16 01:44:54,175] [main] testng.allow-missing = false [testng] [2025-05-16 01:44:54,175] [main] user.language = en [testng] [2025-05-16 01:44:54,175] [main] user.country = ${user.country} [testng] [2025-05-16 01:44:54,175] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2025-05-16 01:58:26,096] [main] ---------------------------------------- [testng] [2025-05-16 01:58:26,096] [main] Total files: 226 [testng] [2025-05-16 01:58:26,097] [main] Scan time: 811.921 s (3592 ms/file) [testng] [2025-05-16 01:58:26,097] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 28 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-16 02:17:36,183] [pool-1-thread-1] Initializing /data/fluoview/Sample_ThreeCH.TIF: [testng] 02:17:36,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 02:17:36,184 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:36,186 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-16_02-17-36.log] [testng] 02:17:36,186 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72f12916 - End of configuration. [testng] [2025-05-16 02:17:40,401] [pool-1-thread-12] Initializing /data/iplab/16Bit XRay.IPL: [testng] 02:17:40,401 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 02:17:40,402 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:40,402 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-16_02-17-40.log] [testng] 02:17:40,403 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4f6762e9 - End of configuration. [testng] [2025-05-16 02:17:41,076] [pool-1-thread-11] Initializing /data/fluoview/sample_labled_XYZCh.tif: [testng] 02:17:41,076 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 02:17:41,077 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:41,077 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-16_02-17-41.log] [testng] 02:17:41,078 |-INFO in ch.qos.logback.core.sift.SiftProcessor@104dfba8 - End of configuration. [testng] [2025-05-16 02:17:46,201] [pool-1-thread-10] Initializing /data/iplab/Chromosomes.IPL: [testng] 02:17:46,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 02:17:46,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:46,202 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-16_02-17-46.log] [testng] 02:17:46,203 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4195630d - End of configuration. [testng] [2025-05-16 02:17:46,602] [pool-1-thread-9] Initializing /data/iplab/Blend_DIC.IPL: [testng] 02:17:46,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 02:17:46,603 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:46,603 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-16_02-17-46.log] [testng] 02:17:46,604 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a2f9115 - End of configuration. [testng] [2025-05-16 02:17:46,989] [pool-1-thread-8] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile--MultiTrack-1.lsm: [testng] 02:17:46,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 02:17:46,989 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:46,990 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-16_02-17-46.log] [testng] 02:17:46,990 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b8a99c6 - End of configuration. [testng] [2025-05-16 02:17:50,475] [pool-1-thread-7] Initializing /data/fluoview/Sample_TwoCH.TIF: [testng] 02:17:50,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 02:17:50,475 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:50,476 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-16_02-17-50.log] [testng] 02:17:50,476 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26b74f21 - End of configuration. [testng] [2025-05-16 02:17:55,811] [pool-1-thread-6] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-2.lsm: [testng] 02:17:55,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 02:17:55,811 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:55,811 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-16_02-17-55.log] [testng] 02:17:55,812 |-INFO in ch.qos.logback.core.sift.SiftProcessor@62e737d3 - End of configuration. [testng] [2025-05-16 02:17:58,055] [pool-1-thread-5] Initializing /data/iplab/10x Blood and Bacteria.IPL: [testng] 02:17:58,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 02:17:58,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:58,056 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-16_02-17-58.log] [testng] 02:17:58,056 |-INFO in ch.qos.logback.core.sift.SiftProcessor@247667e2 - End of configuration. [testng] [2025-05-16 02:17:58,449] [pool-1-thread-4] Initializing /data/iplab/Blend_Dapi.IPL: [testng] 02:17:58,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 02:17:58,449 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:58,450 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-16_02-17-58.log] [testng] 02:17:58,450 |-INFO in ch.qos.logback.core.sift.SiftProcessor@34950e94 - End of configuration. [testng] [2025-05-16 02:17:58,853] [pool-1-thread-3] Initializing /data/fluoview/sample_labled_XYZTCh.tif: [testng] 02:17:58,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 02:17:58,853 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:17:58,854 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-16_02-17-58.log] [testng] 02:17:58,854 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74097485 - End of configuration. [testng] [2025-05-16 02:18:01,385] [pool-1-thread-2] Initializing /data/fluoview/sample_labled_XYTCh.tif: [testng] 02:18:01,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 02:18:01,385 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 02:18:01,386 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-16_02-18-01.log] [testng] 02:18:01,386 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6146efb7 - End of configuration. [testng] [2025-05-16 02:18:11,769] [pool-1-thread-12] Initializing /data/fluoview/SpineAnimation.avi: [testng] [2025-05-16 02:18:13,312] [pool-1-thread-10] Initializing /data/iplab/Actin.IPL: [testng] [2025-05-16 02:18:14,032] [pool-1-thread-4] Initializing /data/fluoview/Sample_XYT.TIF: [testng] [2025-05-16 02:18:20,019] [pool-1-thread-9] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/test3.dm3: [testng] [2025-05-16 02:18:21,313] [pool-1-thread-5] Initializing /data/zeiss_lsm/X-Y-Z-T-Ch-Tile-1.lsm: [testng] [2025-05-16 02:18:37,039] [pool-1-thread-10] Initializing /data/iplab/Color Histology.IPL: [testng] [2025-05-16 02:18:38,708] [pool-1-thread-9] Initializing /data/iplab/3t3 Cell.IPL: [testng] [2025-05-16 02:18:43,735] [pool-1-thread-12] Initializing /data/iplab/Color Image.IPL: [testng] [2025-05-16 02:18:48,643] [pool-1-thread-2] Initializing /data/iplab/Blend_Final.IPL: [testng] [2025-05-16 02:18:49,606] [pool-1-thread-7] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test2.dm3: [testng] [2025-05-16 02:18:50,740] [pool-1-thread-1] Initializing /data/iplab/Blend_Fitc.IPL: [testng] [2025-05-16 02:18:51,680] [pool-1-thread-11] Initializing /data/fluoview/SpineAnimation.tif: [testng] [2025-05-16 02:18:56,808] [pool-1-thread-3] Initializing /data/fluoview/Sample_XT.tif: [testng] [2025-05-16 02:19:02,505] [pool-1-thread-10] Initializing /data/gatan/ImageReader2003/ImageReaderTest/TestFiles/Test.dm3: [testng] [2025-05-16 02:19:04,418] [pool-1-thread-9] Initializing /data/iplab/Blend_Tritc.IPL: [testng] [2025-05-16 02:19:08,423] [pool-1-thread-12] Initializing /data/fluoview/Sample_XYZ.TIF: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1484, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 35 minutes 1 second Finished: SUCCESS