Started by upstream project "BIOFORMATS-test-repo" build number 396
originally caused by:
Started by upstream project "Trigger" build number 480
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@11
[BIOFORMATS-test-folder@11] $ /bin/bash -xe /tmp/jenkins13408198872627188915.sh
+ '[' gatan-dm2 = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_62530_merge_ci -v /uod/idr/repos/curated/gatan-dm2:/data -v /uod/idr-scratch/merge-ci/curated/gatan-dm2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:08:12,795 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 02:08:12,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - No custom configurators were discovered as a service.
[testng] 02:08:12,797 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:08:12,798 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:08:12,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:08:12,798 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:08:12,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:08:12,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:08:12,799 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:08:12,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:08:12,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:08:12,799 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:08:13,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:08:13,026 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:08:13,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:08:13,055 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:08:13,064 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:08:13,064 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:08:13,064 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:08:13,065 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:08:13,065 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@63355449 - End of configuration.
[testng] 02:08:13,066 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@48ae9b55 - Registering current configuration as safe fallback point
[testng] 02:08:13,066 |-INFO in ch.qos.logback.classic.util.ContextInitializer@7ff95560 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 267 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-05-16 02:08:13,076] [main] java.version = 1.8.0_342
[testng] 02:08:13,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:08:13,080 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:08:13,127 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-16_02-08-13.log]
[testng] 02:08:13,128 |-INFO in ch.qos.logback.core.sift.SiftProcessor@765d7657 - End of configuration.
[testng] [2025-05-16 02:08:13,130] [main] testng.directory = /data
[testng] [2025-05-16 02:08:13,130] [main] testng.configDirectory = /config
[testng] [2025-05-16 02:08:13,143] [main] testng.multiplier = 1.0
[testng] [2025-05-16 02:08:13,143] [main] testng.in-memory = false
[testng] [2025-05-16 02:08:13,143] [main] testng.allow-missing = false
[testng] [2025-05-16 02:08:13,143] [main] user.language = en
[testng] [2025-05-16 02:08:13,143] [main] user.country = ${user.country}
[testng] [2025-05-16 02:08:13,143] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2025-05-16 02:08:54,197] [main] ----------------------------------------
[testng] [2025-05-16 02:08:54,197] [main] Total files: 25
[testng] [2025-05-16 02:08:54,197] [main] Scan time: 41.054 s (1642 ms/file)
[testng] [2025-05-16 02:08:54,197] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-05-16 02:09:32,479] [pool-1-thread-1] Initializing /data/imagic/TEM 10118.dm2:
[testng] 02:09:32,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:09:32,480 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:32,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-16_02-09-32.log]
[testng] 02:09:32,481 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22d2a36f - End of configuration.
[testng] [2025-05-16 02:09:32,962] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_general_info.png:
[testng] 02:09:32,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:09:32,962 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:32,963 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-16_02-09-32.log]
[testng] 02:09:32,964 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25db37f6 - End of configuration.
[testng] [2025-05-16 02:09:33,068] [pool-1-thread-11] Initializing /data/pang/grating025k.dm2:
[testng] 02:09:33,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:09:33,069 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:33,070 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-16_02-09-33.log]
[testng] 02:09:33,070 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45c95e35 - End of configuration.
[testng] [2025-05-16 02:09:33,862] [pool-1-thread-10] Initializing /data/pang/unproc-auto:
[testng] 02:09:33,862 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:09:33,863 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:33,863 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-16_02-09-33.log]
[testng] 02:09:33,864 |-INFO in ch.qos.logback.core.sift.SiftProcessor@47bf407b - End of configuration.
[testng] [2025-05-16 02:09:34,684] [pool-1-thread-9] Initializing /data/pang/signed:
[testng] 02:09:34,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:09:34,684 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:34,684 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-16_02-09-34.log]
[testng] 02:09:34,685 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53ae646 - End of configuration.
[testng] [2025-05-16 02:09:35,484] [pool-1-thread-8] Initializing /data/imagic/not read correctly/Abeta Moon.dm2:
[testng] 02:09:35,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:09:35,484 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:35,485 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-16_02-09-35.log]
[testng] 02:09:35,485 |-INFO in ch.qos.logback.core.sift.SiftProcessor@617cd3ad - End of configuration.
[testng] [2025-05-16 02:09:36,212] [pool-1-thread-7] Initializing /data/imagic/13008.dm2:
[testng] 02:09:36,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:09:36,212 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:36,213 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-16_02-09-36.log]
[testng] 02:09:36,213 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41019bae - End of configuration.
[testng] [2025-05-16 02:09:36,927] [pool-1-thread-6] Initializing /data/imagic/Histiocyte in Skin Dermis.dm2:
[testng] 02:09:36,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:09:36,927 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:36,928 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-16_02-09-36.log]
[testng] 02:09:36,928 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fd3c18f - End of configuration.
[testng] [2025-05-16 02:09:37,601] [pool-1-thread-5] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info2.png:
[testng] 02:09:37,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:09:37,601 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:37,602 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-16_02-09-37.log]
[testng] 02:09:37,602 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1ac99820 - End of configuration.
[testng] [2025-05-16 02:09:37,743] [pool-1-thread-4] Initializing /data/pang/screen capture of metadata/tem_dm_tags_info1.png:
[testng] 02:09:37,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:09:37,743 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:37,744 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-16_02-09-37.log]
[testng] 02:09:37,744 |-INFO in ch.qos.logback.core.sift.SiftProcessor@253bb622 - End of configuration.
[testng] [2025-05-16 02:09:37,871] [pool-1-thread-3] Initializing /data/imagic/1-1.dm2:
[testng] 02:09:37,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:09:37,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:37,872 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-16_02-09-37.log]
[testng] 02:09:37,873 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7006e9ba - End of configuration.
[testng] [2025-05-16 02:09:38,676] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Zucchini_preview.png:
[testng] 02:09:38,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:09:38,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:09:38,677 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-16_02-09-38.log]
[testng] 02:09:38,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e503aae - End of configuration.
[testng] [2025-05-16 02:09:43,590] [pool-1-thread-5] Initializing /data/pang/screen capture of metadata/tem_dm_microscope_info.png:
[testng] [2025-05-16 02:09:43,764] [pool-1-thread-4] Initializing /data/pang/10500x-o4:
[testng] [2025-05-16 02:09:44,618] [pool-1-thread-2] Initializing /data/imagic/not read correctly/Abeta Moon_preview.png:
[testng] [2025-05-16 02:09:44,755] [pool-1-thread-12] Initializing /data/pang/screen capture of metadata/tem_dm_keywords_info.png:
[testng] [2025-05-16 02:09:46,882] [pool-1-thread-8] Initializing /data/pang/DLMeD2E1_010500x03.dm2:
[testng] [2025-05-16 02:09:47,821] [pool-1-thread-6] Initializing /data/imagic/not read correctly/Zucchini.dm2:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 46 seconds
Finished: SUCCESS