Started by upstream project "BIOFORMATS-test-repo" build number 397 originally caused by: Started by upstream project "Trigger" build number 481 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@14 [BIOFORMATS-test-folder@14] $ /bin/bash -xe /tmp/jenkins12407466607865100263.sh + '[' ivision = slidebook ']' ++ date +%u + '[' 6 -le 1 ']' + sudo docker run --rm --name BIOFORMATS-test-folder_62785_merge_ci -v /uod/idr/repos/curated/ivision:/data -v /uod/idr-scratch/merge-ci/curated/ivision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] 1 warning test-automated: [testng] WARNING: An illegal reflective access operation has occurred [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations [testng] WARNING: All illegal access operations will be denied in a future release [testng] File leak detector installed [testng] 10:21:01,354 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15 [testng] 10:21:01,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - No custom configurators were discovered as a service. [testng] 10:21:01,356 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:21:01,357 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 10:21:01,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 10:21:01,357 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 10:21:01,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 10:21:01,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:21:01,358 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 10:21:01,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 10:21:01,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 10:21:01,359 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 10:21:01,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 10:21:01,615 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 10:21:01,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 10:21:01,636 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 10:21:01,641 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 10:21:01,642 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 10:21:01,642 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 10:21:01,642 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 10:21:01,642 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@65c7a252 - End of configuration. [testng] 10:21:01,643 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@38cee291 - Registering current configuration as safe fallback point [testng] 10:21:01,643 |-INFO in ch.qos.logback.classic.util.ContextInitializer@4d910fd6 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 285 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2025-05-17 10:21:01,651] [main] java.version = 11.0.16 [testng] 10:21:01,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 10:21:01,654 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:21:01,785 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-17_10-21-01.log] [testng] 10:21:01,786 |-INFO in ch.qos.logback.core.sift.SiftProcessor@13d73f29 - End of configuration. [testng] [2025-05-17 10:21:01,787] [main] testng.directory = /data [testng] [2025-05-17 10:21:01,788] [main] testng.configDirectory = /config [testng] [2025-05-17 10:21:01,797] [main] testng.multiplier = 1.0 [testng] [2025-05-17 10:21:01,798] [main] testng.in-memory = false [testng] [2025-05-17 10:21:01,798] [main] testng.allow-missing = false [testng] [2025-05-17 10:21:01,798] [main] user.language = en [testng] [2025-05-17 10:21:01,798] [main] user.country = ${user.country} [testng] [2025-05-17 10:21:01,799] [main] Maximum heap size = 15360 MB [testng] Scanning for files... [testng] [2025-05-17 10:21:26,499] [main] ---------------------------------------- [testng] [2025-05-17 10:21:26,499] [main] Total files: 17 [testng] [2025-05-17 10:21:26,499] [main] Scan time: 24.7 s (1452 ms/file) [testng] [2025-05-17 10:21:26,499] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 17 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2025-05-17 10:22:02,425] [pool-1-thread-1] Initializing /data/christopher/122308_I_MPT_4x-Test1.ipm: [testng] 10:22:02,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 10:22:02,426 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:02,428 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-17_10-22-02.log] [testng] 10:22:02,428 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53bc57ce - End of configuration. [testng] [2025-05-17 10:22:04,181] [pool-1-thread-12] Initializing /data/samples/08Bit 320x256x1.ipm: [testng] 10:22:04,181 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 10:22:04,182 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:04,183 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-17_10-22-04.log] [testng] 10:22:04,183 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4057a61f - End of configuration. [testng] [2025-05-17 10:22:05,844] [pool-1-thread-11] Initializing /data/jcb/200810162/mutBA plus bio.ipm: [testng] 10:22:05,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 10:22:05,844 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:05,845 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-17_10-22-05.log] [testng] 10:22:05,845 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c2e86ab - End of configuration. [testng] [2025-05-17 10:22:07,680] [pool-1-thread-10] Initializing /data/samples/08Bit 320x256xthree.ipm: [testng] 10:22:07,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 10:22:07,680 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:07,680 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-17_10-22-07.log] [testng] 10:22:07,681 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e43642b - End of configuration. [testng] [2025-05-17 10:22:09,697] [pool-1-thread-9] Initializing /data/jcb/JCB 200905007 Fig 7B gfp center: [testng] 10:22:09,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 10:22:09,698 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:09,698 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-17_10-22-09.log] [testng] 10:22:09,699 |-INFO in ch.qos.logback.core.sift.SiftProcessor@691ce870 - End of configuration. [testng] [2025-05-17 10:22:11,524] [pool-1-thread-8] Initializing /data/jcb/200810162/mut BA no bio.ipm: [testng] 10:22:11,524 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 10:22:11,525 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:11,525 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-17_10-22-11.log] [testng] 10:22:11,526 |-INFO in ch.qos.logback.core.sift.SiftProcessor@17de64cd - End of configuration. [testng] [2025-05-17 10:22:13,100] [pool-1-thread-7] Initializing /data/jcb/200810162/wt ba no bio.ipm: [testng] 10:22:13,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 10:22:13,100 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:13,101 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-17_10-22-13.log] [testng] 10:22:13,101 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a2c10ca - End of configuration. [testng] [2025-05-17 10:22:14,915] [pool-1-thread-6] Initializing /data/christopher/Color48 Copy.ipm: [testng] 10:22:14,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 10:22:14,915 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:14,916 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-17_10-22-14.log] [testng] 10:22:14,916 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4b7b84e - End of configuration. [testng] [2025-05-17 10:22:16,983] [pool-1-thread-5] Initializing /data/nigel/CD48_75_24hrColor.ipm: [testng] 10:22:16,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 10:22:16,983 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:16,984 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-17_10-22-16.log] [testng] 10:22:16,984 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7278c9a5 - End of configuration. [testng] [2025-05-17 10:22:18,787] [pool-1-thread-4] Initializing /data/samples/48bit 150x100x3.ipm: [testng] 10:22:18,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 10:22:18,787 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:18,788 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-17_10-22-18.log] [testng] 10:22:18,788 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1f6f9b22 - End of configuration. [testng] [2025-05-17 10:22:20,495] [pool-1-thread-3] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).GOOD.ipm: [testng] 10:22:20,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 10:22:20,495 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:20,496 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-17_10-22-20.log] [testng] 10:22:20,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@141fc1fc - End of configuration. [testng] [2025-05-17 10:22:22,215] [pool-1-thread-2] Initializing /data/samples/16-bit 320x256x3.ipm: [testng] 10:22:22,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 10:22:22,215 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 10:22:22,216 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-17_10-22-22.log] [testng] 10:22:22,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b9e56c - End of configuration. [testng] [2025-05-17 10:22:37,308] [pool-1-thread-12] Initializing /data/samples/24bit 300x200x3.ipm: [testng] [2025-05-17 10:22:39,226] [pool-1-thread-4] Initializing /data/john/Images for BioFormats/512x512x16x24bit(ARGB).BAD.ipm: [testng] [2025-05-17 10:22:41,297] [pool-1-thread-2] Initializing /data/jcb/200810162/wt BA plus bio.ipm: [testng] [2025-05-17 10:22:43,300] [pool-1-thread-10] Initializing /data/christopher/122308_I_MPT_4x-test2.ipm: [testng] [2025-05-17 10:22:52,173] [pool-1-thread-3] Initializing /data/samples/16bit 320x256x1.ipm: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 901, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 2 minutes 48 seconds Finished: SUCCESS