Started by upstream project "BIOFORMATS-test-repo" build number 398
originally caused by:
Started by upstream project "Trigger" build number 484
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@13
[BIOFORMATS-test-folder@13] $ /bin/bash -xe /tmp/jenkins7894493568843553876.sh
+ '[' hitachi = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_62811_merge_ci -v /uod/idr/repos/curated/hitachi:/data -v /uod/idr-scratch/merge-ci/curated/hitachi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 01:32:46,396 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 01:32:46,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
[testng] 01:32:46,397 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:32:46,398 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 01:32:46,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 01:32:46,398 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 01:32:46,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 01:32:46,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:32:46,399 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 01:32:46,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 01:32:46,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 01:32:46,400 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 01:32:46,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:32:46,553 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:32:46,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:32:46,575 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:32:46,580 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:32:46,580 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:32:46,580 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:32:46,580 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:32:46,580 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
[testng] 01:32:46,581 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
[testng] 01:32:46,581 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 182 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-05-18 01:32:46,589] [main] java.version = 17.0.2
[testng] 01:32:46,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:32:46,592 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:32:46,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_01-32-46.log]
[testng] 01:32:46,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
[testng] [2025-05-18 01:32:46,634] [main] testng.directory = /data
[testng] [2025-05-18 01:32:46,634] [main] testng.configDirectory = /config
[testng] [2025-05-18 01:32:46,642] [main] testng.multiplier = 1.0
[testng] [2025-05-18 01:32:46,643] [main] testng.in-memory = false
[testng] [2025-05-18 01:32:46,644] [main] testng.allow-missing = false
[testng] [2025-05-18 01:32:46,644] [main] user.language = en
[testng] [2025-05-18 01:32:46,644] [main] user.country = ${user.country}
[testng] [2025-05-18 01:32:46,644] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-05-18 01:35:03,098] [main] ----------------------------------------
[testng] [2025-05-18 01:35:03,098] [main] Total files: 21
[testng] [2025-05-18 01:35:03,098] [main] Scan time: 136.454 s (6497 ms/file)
[testng] [2025-05-18 01:35:03,098] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 18 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-05-18 01:41:35,744] [pool-1-thread-1] Initializing /data/stefan/001_q18.txt:
[testng] 01:41:35,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:41:35,745 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:41:35,746 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-18_01-41-35.log]
[testng] 01:41:35,746 |-INFO in ch.qos.logback.core.sift.SiftProcessor@385470e5 - End of configuration.
[testng] [2025-05-18 01:42:03,753] [pool-1-thread-12] Initializing /data/stefan/001_q08.txt:
[testng] 01:42:03,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:42:03,754 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:03,754 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_01-42-03.log]
[testng] 01:42:03,755 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5236f142 - End of configuration.
[testng] [2025-05-18 01:42:34,676] [pool-1-thread-11] Initializing /data/stefan/001_q13.txt:
[testng] 01:42:34,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:42:34,676 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:42:34,678 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_01-42-34.log]
[testng] 01:42:34,678 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3868f937 - End of configuration.
[testng] [2025-05-18 01:43:08,633] [pool-1-thread-10] Initializing /data/stefan/001_q11.txt:
[testng] 01:43:08,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:43:08,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:43:08,635 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_01-43-08.log]
[testng] 01:43:08,635 |-INFO in ch.qos.logback.core.sift.SiftProcessor@528bb70d - End of configuration.
[testng] [2025-05-18 01:44:02,847] [pool-1-thread-9] Initializing /data/stefan/001_q07.txt:
[testng] 01:44:02,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:44:02,847 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:02,848 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_01-44-02.log]
[testng] 01:44:02,848 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a86fc1e - End of configuration.
[testng] [2025-05-18 01:44:35,169] [pool-1-thread-8] Initializing /data/stefan/001_q04.txt:
[testng] 01:44:35,169 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:44:35,170 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:35,170 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-18_01-44-35.log]
[testng] 01:44:35,171 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2937bd26 - End of configuration.
[testng] [2025-05-18 01:44:58,122] [pool-1-thread-7] Initializing /data/stefan/001_q10.txt:
[testng] 01:44:58,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:44:58,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:44:58,122 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_01-44-58.log]
[testng] 01:44:58,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ba6cf50 - End of configuration.
[testng] [2025-05-18 01:45:19,036] [pool-1-thread-6] Initializing /data/stefan/001_q15.txt:
[testng] 01:45:19,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:45:19,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:45:19,037 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-18_01-45-19.log]
[testng] 01:45:19,038 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60f66772 - End of configuration.
[testng] [2025-05-18 01:45:34,400] [pool-1-thread-5] Initializing /data/stefan/001_q12.txt:
[testng] 01:45:34,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:45:34,400 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:45:34,401 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_01-45-34.log]
[testng] 01:45:34,401 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60289874 - End of configuration.
[testng] [2025-05-18 01:46:23,630] [pool-1-thread-4] Initializing /data/stefan/001_q09.txt:
[testng] 01:46:23,630 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:46:23,631 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:23,631 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_01-46-23.log]
[testng] 01:46:23,632 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5dfa9ee5 - End of configuration.
[testng] [2025-05-18 01:46:40,228] [pool-1-thread-3] Initializing /data/stefan/001_q02.txt:
[testng] 01:46:40,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:46:40,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:40,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_01-46-40.log]
[testng] 01:46:40,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@50de708e - End of configuration.
[testng] [2025-05-18 01:46:53,359] [pool-1-thread-2] Initializing /data/stefan/001_q17.txt:
[testng] 01:46:53,359 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:46:53,360 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:46:53,360 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_01-46-53.log]
[testng] 01:46:53,361 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c5c9d15 - End of configuration.
[testng] [2025-05-18 01:52:57,934] [pool-1-thread-8] Initializing /data/stefan/001_q16.txt:
[testng] [2025-05-18 01:53:28,557] [pool-1-thread-3] Initializing /data/stefan/001_q03.txt:
[testng] [2025-05-18 01:53:57,336] [pool-1-thread-11] Initializing /data/stefan/001_q01.txt:
[testng] [2025-05-18 01:54:12,633] [pool-1-thread-2] Initializing /data/stefan/001_q06.txt:
[testng] [2025-05-18 01:54:32,052] [pool-1-thread-6] Initializing /data/stefan/001_q05.txt:
[testng] [2025-05-18 01:54:40,225] [pool-1-thread-1] Initializing /data/stefan/001_q14.txt:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 954, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 25 minutes 10 seconds
Finished: SUCCESS