Started by upstream project "BIOFORMATS-test-repo" build number 398
originally caused by:
Started by upstream project "Trigger" build number 484
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins9550075588303124473.sh
+ '[' afi = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_62877_merge_ci -v /uod/idr/repos/curated/afi:/data -v /uod/idr-scratch/merge-ci/curated/afi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 04:58:11,220 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 04:58:11,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
[testng] 04:58:11,221 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:58:11,222 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 04:58:11,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 04:58:11,222 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 04:58:11,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 04:58:11,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:58:11,223 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 04:58:11,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 04:58:11,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 04:58:11,224 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 04:58:11,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 04:58:11,418 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 04:58:11,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 04:58:11,439 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 04:58:11,444 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 04:58:11,445 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 04:58:11,445 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 04:58:11,445 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 04:58:11,445 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
[testng] 04:58:11,446 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
[testng] 04:58:11,446 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 223 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-05-18 04:58:11,454] [main] java.version = 17.0.2
[testng] 04:58:11,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 04:58:11,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 04:58:11,766 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_04-58-11.log]
[testng] 04:58:11,767 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
[testng] [2025-05-18 04:58:11,769] [main] testng.directory = /data
[testng] [2025-05-18 04:58:11,770] [main] testng.configDirectory = /config
[testng] [2025-05-18 04:58:11,778] [main] testng.multiplier = 1.0
[testng] [2025-05-18 04:58:11,779] [main] testng.in-memory = false
[testng] [2025-05-18 04:58:11,779] [main] testng.allow-missing = false
[testng] [2025-05-18 04:58:11,779] [main] user.language = en
[testng] [2025-05-18 04:58:11,779] [main] user.country = ${user.country}
[testng] [2025-05-18 04:58:11,779] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-05-18 04:58:34,394] [main] ----------------------------------------
[testng] [2025-05-18 04:58:34,394] [main] Total files: 16
[testng] [2025-05-18 04:58:34,394] [main] Scan time: 22.614 s (1413 ms/file)
[testng] [2025-05-18 04:58:34,394] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 15 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-05-18 05:00:45,545] [pool-1-thread-1] Initializing /data/samples/5343.afi:
[testng] 05:00:45,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 05:00:45,546 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:00:45,547 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-18_05-00-45.log]
[testng] 05:00:45,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@204f371f - End of configuration.
[testng] [2025-05-18 05:00:52,859] [pool-1-thread-12] Initializing /data/samples/5414.afi:
[testng] 05:00:52,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 05:00:52,860 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:00:52,860 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_05-00-52.log]
[testng] 05:00:52,861 |-INFO in ch.qos.logback.core.sift.SiftProcessor@e4a8f3b - End of configuration.
[testng] [2025-05-18 05:00:59,752] [pool-1-thread-11] Initializing /data/samples/5351.afi:
[testng] 05:00:59,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 05:00:59,752 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:00:59,753 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_05-00-59.log]
[testng] 05:00:59,753 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1177caf6 - End of configuration.
[testng] [2025-05-18 05:01:05,546] [pool-1-thread-10] Initializing /data/samples/5383.afi:
[testng] 05:01:05,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 05:01:05,547 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:01:05,548 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_05-01-05.log]
[testng] 05:01:05,548 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4e936439 - End of configuration.
[testng] [2025-05-18 05:01:11,499] [pool-1-thread-9] Initializing /data/samples/5446.afi:
[testng] 05:01:11,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 05:01:11,500 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:01:11,500 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_05-01-11.log]
[testng] 05:01:11,501 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ce66f7d - End of configuration.
[testng] [2025-05-18 05:01:17,446] [pool-1-thread-8] Initializing /data/samples/5339.afi:
[testng] 05:01:17,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 05:01:17,447 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:01:17,447 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-18_05-01-17.log]
[testng] 05:01:17,448 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20ecf0dc - End of configuration.
[testng] [2025-05-18 05:01:24,043] [pool-1-thread-7] Initializing /data/samples/5440.afi:
[testng] 05:01:24,043 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 05:01:24,044 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:01:24,044 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_05-01-24.log]
[testng] 05:01:24,045 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33c989d2 - End of configuration.
[testng] [2025-05-18 05:01:29,175] [pool-1-thread-6] Initializing /data/samples/5400.afi:
[testng] 05:01:29,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 05:01:29,175 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:01:29,176 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-18_05-01-29.log]
[testng] 05:01:29,176 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d888d59 - End of configuration.
[testng] [2025-05-18 05:01:32,625] [pool-1-thread-5] Initializing /data/samples/5365.afi:
[testng] 05:01:32,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 05:01:32,625 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:01:32,626 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_05-01-32.log]
[testng] 05:01:32,626 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7445c664 - End of configuration.
[testng] [2025-05-18 05:01:38,214] [pool-1-thread-4] Initializing /data/samples/5407.afi:
[testng] 05:01:38,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 05:01:38,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:01:38,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_05-01-38.log]
[testng] 05:01:38,216 |-INFO in ch.qos.logback.core.sift.SiftProcessor@426602e - End of configuration.
[testng] [2025-05-18 05:01:45,090] [pool-1-thread-3] Initializing /data/samples/5371.afi:
[testng] 05:01:45,090 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 05:01:45,091 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:01:45,091 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_05-01-45.log]
[testng] 05:01:45,092 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30e1e4a4 - End of configuration.
[testng] [2025-05-18 05:01:52,708] [pool-1-thread-2] Initializing /data/samples/5306.afi:
[testng] 05:01:52,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 05:01:52,708 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 05:01:52,709 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_05-01-52.log]
[testng] 05:01:52,709 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ca6ae30 - End of configuration.
[testng] [2025-05-18 05:06:03,779] [pool-1-thread-9] Initializing /data/samples/5358.afi:
[testng] [2025-05-18 05:06:11,678] [pool-1-thread-5] Initializing /data/samples/5347.afi:
[testng] [2025-05-18 05:06:19,047] [pool-1-thread-6] Initializing /data/samples/5387.afi:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 795, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 10 minutes 37 seconds
Finished: SUCCESS