Started by upstream project "BIOFORMATS-test-repo" build number 398
originally caused by:
Started by upstream project "Trigger" build number 484
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins5679028420830778931.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_62891_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 06:17:23,021 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.15
[testng] 06:17:23,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - No custom configurators were discovered as a service.
[testng] 06:17:23,023 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:17:23,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 06:17:23,024 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 06:17:23,024 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 06:17:23,024 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 0 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 06:17:23,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:17:23,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 06:17:23,025 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 06:17:23,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 06:17:23,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 06:17:23,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 06:17:23,180 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 06:17:23,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 06:17:23,202 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 06:17:23,207 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 06:17:23,207 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 06:17:23,207 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 06:17:23,208 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 06:17:23,208 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@3f6f6701 - End of configuration.
[testng] 06:17:23,209 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@4f80542f - Registering current configuration as safe fallback point
[testng] 06:17:23,209 |-INFO in ch.qos.logback.classic.util.ContextInitializer@2beee7ff - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 184 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2025-05-18 06:17:23,217] [main] java.version = 17.0.2
[testng] 06:17:23,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 06:17:23,220 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:17:23,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2025-05-18_06-17-23.log]
[testng] 06:17:23,261 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14bdbc74 - End of configuration.
[testng] [2025-05-18 06:17:23,264] [main] testng.directory = /data
[testng] [2025-05-18 06:17:23,264] [main] testng.configDirectory = /config
[testng] [2025-05-18 06:17:23,272] [main] testng.multiplier = 1.0
[testng] [2025-05-18 06:17:23,273] [main] testng.in-memory = false
[testng] [2025-05-18 06:17:23,273] [main] testng.allow-missing = false
[testng] [2025-05-18 06:17:23,273] [main] user.language = en
[testng] [2025-05-18 06:17:23,274] [main] user.country = ${user.country}
[testng] [2025-05-18 06:17:23,274] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2025-05-18 06:17:23,769] [main] ----------------------------------------
[testng] [2025-05-18 06:17:23,769] [main] Total files: 19
[testng] [2025-05-18 06:17:23,769] [main] Scan time: 0.495 s (26 ms/file)
[testng] [2025-05-18 06:17:23,769] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2025-05-18 06:18:40,713] [pool-1-thread-1] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] 06:18:40,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 06:18:40,713 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:40,715 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2025-05-18_06-18-40.log]
[testng] 06:18:40,715 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5001f6e9 - End of configuration.
[testng] [2025-05-18 06:18:43,798] [pool-1-thread-12] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 06:18:43,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 06:18:43,798 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:43,799 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2025-05-18_06-18-43.log]
[testng] 06:18:43,799 |-INFO in ch.qos.logback.core.sift.SiftProcessor@57af4386 - End of configuration.
[testng] [2025-05-18 06:18:47,872] [pool-1-thread-11] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] 06:18:47,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 06:18:47,873 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:47,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2025-05-18_06-18-47.log]
[testng] 06:18:47,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3cc4bfc9 - End of configuration.
[testng] [2025-05-18 06:18:51,754] [pool-1-thread-10] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 06:18:51,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 06:18:51,755 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:51,755 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2025-05-18_06-18-51.log]
[testng] 06:18:51,756 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66d3eac0 - End of configuration.
[testng] [2025-05-18 06:18:55,647] [pool-1-thread-9] Initializing /data/samples/100R PICT0001.MRW:
[testng] 06:18:55,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 06:18:55,648 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:55,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2025-05-18_06-18-55.log]
[testng] 06:18:55,649 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25f0ff9e - End of configuration.
[testng] [2025-05-18 06:18:59,196] [pool-1-thread-8] Initializing /data/samples/400R PICT0003.MRW:
[testng] 06:18:59,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 06:18:59,196 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:18:59,197 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2025-05-18_06-18-59.log]
[testng] 06:18:59,197 |-INFO in ch.qos.logback.core.sift.SiftProcessor@188a9798 - End of configuration.
[testng] [2025-05-18 06:19:02,826] [pool-1-thread-7] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] 06:19:02,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 06:19:02,826 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:19:02,827 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2025-05-18_06-19-02.log]
[testng] 06:19:02,827 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7988aee7 - End of configuration.
[testng] [2025-05-18 06:19:06,550] [pool-1-thread-6] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 06:19:06,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 06:19:06,551 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:19:06,551 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2025-05-18_06-19-06.log]
[testng] 06:19:06,552 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ae823ba - End of configuration.
[testng] [2025-05-18 06:19:11,490] [pool-1-thread-5] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 06:19:11,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 06:19:11,490 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:19:11,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2025-05-18_06-19-11.log]
[testng] 06:19:11,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ba0c04e - End of configuration.
[testng] [2025-05-18 06:19:15,670] [pool-1-thread-4] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 06:19:15,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 06:19:15,670 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:19:15,671 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2025-05-18_06-19-15.log]
[testng] 06:19:15,671 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b756b92 - End of configuration.
[testng] [2025-05-18 06:19:20,374] [pool-1-thread-3] Initializing /data/samples/3200R PICT0006.MRW:
[testng] 06:19:20,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 06:19:20,374 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:19:20,375 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2025-05-18_06-19-20.log]
[testng] 06:19:20,375 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23283b67 - End of configuration.
[testng] [2025-05-18 06:19:25,199] [pool-1-thread-2] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] 06:19:25,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 06:19:25,200 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 06:19:25,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2025-05-18_06-19-25.log]
[testng] 06:19:25,201 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5262b3ca - End of configuration.
[testng] [2025-05-18 06:20:04,647] [pool-1-thread-10] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] [2025-05-18 06:20:08,734] [pool-1-thread-2] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] [2025-05-18 06:20:12,968] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] [2025-05-18 06:20:17,636] [pool-1-thread-3] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2025-05-18 06:20:20,694] [pool-1-thread-4] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] [2025-05-18 06:20:24,863] [pool-1-thread-11] Initializing /data/samples/200R PICT0002.MRW:
[testng] [2025-05-18 06:20:29,603] [pool-1-thread-5] Initializing /data/samples/800R PICT0010.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 3 minutes 50 seconds
Finished: SUCCESS