Started by upstream project "BIOFORMATS-test-repo" build number 5
originally caused by:
Started by upstream project "Trigger" build number 6
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@6
[BIOFORMATS-test-folder@6] $ /bin/bash -xe /tmp/jenkins11752961866288541657.sh
+ '[' olympus-oir = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_637_merge_ci -v /uod/idr/repos/curated/olympus-oir:/data -v /uod/idr-scratch/merge-ci/curated/olympus-oir:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:20:13,292 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:20:13,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 00:20:13,295 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:20:13,296 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:20:13,296 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:20:13,297 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:20:13,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:20:13,297 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:20:13,298 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:20:13,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:20:13,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:20:13,298 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:20:13,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:20:13,550 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:20:13,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:20:13,581 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:20:13,590 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:20:13,591 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:20:13,591 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:20:13,591 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:20:13,591 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 00:20:13,592 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 00:20:13,592 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 294 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-18 00:20:13,606] [main] java.version = 1.8.0_342
[testng] 00:20:13,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:20:13,610 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:20:13,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-18_00-20-13.log]
[testng] 00:20:13,665 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-03-18 00:20:13,667] [main] testng.directory = /data
[testng] [2024-03-18 00:20:13,667] [main] testng.configDirectory = /config
[testng] [2024-03-18 00:20:13,690] [main] testng.multiplier = 1.0
[testng] [2024-03-18 00:20:13,691] [main] testng.in-memory = false
[testng] [2024-03-18 00:20:13,691] [main] testng.allow-missing = false
[testng] [2024-03-18 00:20:13,691] [main] user.language = fr
[testng] [2024-03-18 00:20:13,691] [main] user.country = FR
[testng] [2024-03-18 00:20:13,692] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-03-18 00:20:34,441] [main] ----------------------------------------
[testng] [2024-03-18 00:20:34,442] [main] Total files: 283
[testng] [2024-03-18 00:20:34,442] [main] Scan time: 20.749 s (73 ms/file)
[testng] [2024-03-18 00:20:34,442] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 186 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-18 00:30:20,734] [pool-1-thread-1] Initializing /data/olympus/_stitched 4x4 zstack 10X_XYZ_/stack1/frame_t_0.ets:
[testng] 00:30:20,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:30:20,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:20,735 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-18_00-30-20.log]
[testng] 00:30:20,736 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ccd5c08 - End of configuration.
[testng] [2024-03-18 00:30:20,812] [pool-1-thread-12] Initializing /data/qa-17409/Stitch_A01_G001-exported.ome.tif:
[testng] 00:30:20,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:30:20,812 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:20,813 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-18_00-30-20.log]
[testng] 00:30:20,813 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36195959 - End of configuration.
[testng] [2024-03-18 00:30:21,033] [pool-1-thread-11] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.ome.tif:
[testng] 00:30:21,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:30:21,033 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:21,034 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-18_00-30-21.log]
[testng] 00:30:21,035 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4149496e - End of configuration.
[testng] [2024-03-18 00:30:21,319] [pool-1-thread-10] Initializing /data/qa-17270/stack1.ome.tif:
[testng] 00:30:21,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:30:21,319 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:21,320 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-18_00-30-21.log]
[testng] 00:30:21,320 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2dc1862 - End of configuration.
[testng] [2024-03-18 00:30:21,621] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/Stitch_A01_G001_0001.oir:
[testng] 00:30:21,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:30:21,621 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:21,622 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-18_00-30-21.log]
[testng] 00:30:21,622 |-INFO in ch.qos.logback.core.sift.SiftProcessor@392f8486 - End of configuration.
[testng] [2024-03-18 00:30:21,950] [pool-1-thread-8] Initializing /data/public/etienne/coupe shg stack_0001.oir:
[testng] 00:30:21,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:30:21,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:21,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-18_00-30-21.log]
[testng] 00:30:21,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7cba794d - End of configuration.
[testng] [2024-03-18 00:30:22,514] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729_0019.oir:
[testng] 00:30:22,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:30:22,514 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:22,515 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-18_00-30-22.log]
[testng] 00:30:22,515 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32977da6 - End of configuration.
[testng] [2024-03-18 00:30:22,899] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729.oir:
[testng] 00:30:22,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:30:22,899 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:22,900 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-18_00-30-22.log]
[testng] 00:30:22,900 |-INFO in ch.qos.logback.core.sift.SiftProcessor@625baa59 - End of configuration.
[testng] [2024-03-18 00:30:23,291] [pool-1-thread-5] Initializing /data/olympus/spectral_scan_XYL.oir:
[testng] 00:30:23,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:30:23,291 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:23,292 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-18_00-30-23.log]
[testng] 00:30:23,292 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6a4b30f8 - End of configuration.
[testng] [2024-03-18 00:30:24,296] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W1-135 D6 New 20150818_0010.tif:
[testng] 00:30:24,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:30:24,296 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:24,297 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-18_00-30-24.log]
[testng] 00:30:24,297 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4efbb47e - End of configuration.
[testng] [2024-03-18 00:30:24,415] [pool-1-thread-3] Initializing /data/olympus/Clipboard-spectral_scan_XYL.tif:
[testng] 00:30:24,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:30:24,416 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:24,416 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-18_00-30-24.log]
[testng] 00:30:24,417 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2d90e277 - End of configuration.
[testng] [2024-03-18 00:30:24,561] [pool-1-thread-2] Initializing /data/qa-17270/alexa488.oir:
[testng] 00:30:24,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:30:24,561 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:30:24,562 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-18_00-30-24.log]
[testng] 00:30:24,562 |-INFO in ch.qos.logback.core.sift.SiftProcessor@407e7d3d - End of configuration.
[testng] [2024-03-18 00:30:27,940] [pool-1-thread-11] Initializing /data/olympus/2017-04-20/Clipboard.tif:
[testng] [2024-03-18 00:30:28,160] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2.ome.tif:
[testng] [2024-03-18 00:30:29,067] [pool-1-thread-4] Initializing /data/olympus/Clipboard-XYZt.tif:
[testng] [2024-03-18 00:30:29,363] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Clipboard-Image_0055_0001.tif:
[testng] [2024-03-18 00:30:29,658] [pool-1-thread-2] Initializing /data/qa-17270/Clipboard-alexa488.tif:
[testng] [2024-03-18 00:30:29,858] [pool-1-thread-1] Initializing /data/public/etienne/Clipboard-venus stack.tif:
[testng] [2024-03-18 00:30:30,417] [pool-1-thread-12] Initializing /data/qa-17270/image1.oir:
[testng] [2024-03-18 00:30:31,255] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Clipboard-Image_0079_0001.tif:
[testng] [2024-03-18 00:30:31,476] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x.oir:
[testng] [2024-03-18 00:30:32,177] [pool-1-thread-11] Initializing /data/qa-18802/20171020_JupGFPHisRFP_L3_30xSI_galvo_p5z_p1xy_better_than_nyquist.oir:
[testng] [2024-03-18 00:30:33,869] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.ome.tif:
[testng] [2024-03-18 00:30:34,506] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Clipboard-Image_0064_0001.tif:
[testng] [2024-03-18 00:30:34,866] [pool-1-thread-8] Initializing /data/qa-16871/Clipboard.tif:
[testng] [2024-03-18 00:30:35,153] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Clipboard-Image_0058_0001.tif:
[testng] [2024-03-18 00:30:35,956] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10-50 D2_0019.tif:
[testng] [2024-03-18 00:30:36,838] [pool-1-thread-12] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.ome.tif:
[testng] [2024-03-18 00:30:37,526] [pool-1-thread-2] Initializing /data/olympus/Clipboard-Stitched_XYZ.tif:
[testng] [2024-03-18 00:30:38,064] [pool-1-thread-1] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/Stitch_A01_G001.oir:
[testng] [2024-03-18 00:30:38,925] [pool-1-thread-9] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Clipboard-Image_0106_0001.tif:
[testng] [2024-03-18 00:30:41,159] [pool-1-thread-5] Initializing /data/qa-17270/alexa488.ome.tif:
[testng] [2024-03-18 00:30:41,722] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/20x_MATL_Cycle/matl.omp2info:
[testng] [2024-03-18 00:30:45,444] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.oir:
[testng] [2024-03-18 00:30:45,925] [pool-1-thread-7] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.oir:
[testng] [2024-03-18 00:30:46,551] [pool-1-thread-10] Initializing /data/qa-17222/ps245 red tubulin green 60x_5ADVMLE-1.oir.vsi:
[testng] [2024-03-18 00:30:46,873] [pool-1-thread-4] Initializing /data/qa-17270/stack1.oir:
[testng] [2024-03-18 00:30:49,566] [pool-1-thread-3] Initializing /data/olympus/40X_4CH_XY.oir:
[testng] [2024-03-18 00:30:50,416] [pool-1-thread-12] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/matl.omp2info:
[testng] [2024-03-18 00:30:57,430] [pool-1-thread-2] Initializing /data/olympus/Stitched_XYZ.vsi:
[testng] [2024-03-18 00:31:00,190] [pool-1-thread-9] Initializing /data/qa-17222/ps245 red tubulin green 60x.ome.tif:
[testng] [2024-03-18 00:31:00,999] [pool-1-thread-2] Initializing /data/public/etienne/Clipboard-coupe shg stack_0001.tif:
[testng] [2024-03-18 00:31:01,317] [pool-1-thread-5] Initializing /data/qa-16881/W4-45 D5 New 20150816_0011.ome.tif:
[testng] [2024-03-18 00:31:02,489] [pool-1-thread-10] Initializing /data/olympus/2017-11-20/stimulation_exp/stimulation_exp.oir:
[testng] [2024-03-18 00:31:11,217] [pool-1-thread-6] Initializing /data/qa-16881/W1-75 D11 New 20150825_0004.oir:
[testng] [2024-03-18 00:31:11,700] [pool-1-thread-7] Initializing /data/qa-21508/Stitch_A01_G008.oir:
[testng] [2024-03-18 00:31:12,282] [pool-1-thread-3] Initializing /data/qa-16881/P10-50 D2_0019.ome.tif:
[testng] [2024-03-18 00:31:14,056] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.oir:
[testng] [2024-03-18 00:31:14,539] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.ome.tif:
[testng] [2024-03-18 00:31:15,231] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Clipboard-Image_0099_0001.tif:
[testng] [2024-03-18 00:31:15,340] [pool-1-thread-9] Initializing /data/olympus/2017-04-20/mito_0006_0001.ome.tif:
[testng] [2024-03-18 00:31:16,447] [pool-1-thread-6] Initializing /data/olympus/_calcium sparks_XYt_/stack1/frame_t_0.ets:
[testng] [2024-03-18 00:31:16,810] [pool-1-thread-11] Initializing /data/olympus/calcium sparks_XYt.ome.tif:
[testng] [2024-03-18 00:31:17,106] [pool-1-thread-3] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Clipboard-Image_0091_0001.tif:
[testng] [2024-03-18 00:31:17,467] [pool-1-thread-1] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.ome.tif:
[testng] [2024-03-18 00:31:17,971] [pool-1-thread-9] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/matl.omp2info:
[testng] [2024-03-18 00:31:26,172] [pool-1-thread-5] Initializing /data/olympus/Clipboard-stitched 4x4 zstack 10X_XYZ.tif:
[testng] [2024-03-18 00:31:26,376] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.ome.tif:
[testng] [2024-03-18 00:31:27,327] [pool-1-thread-6] Initializing /data/qa-16881/P10-50 D2_0019.oir:
[testng] [2024-03-18 00:31:29,680] [pool-1-thread-3] Initializing /data/samples/channel-reorder/Stitched_XYZ-modified.oir:
[testng] [2024-03-18 00:31:31,689] [pool-1-thread-11] Initializing /data/olympus/Stitched_XYZ.ome.tif:
[testng] [2024-03-18 00:31:33,327] [pool-1-thread-1] Initializing /data/qa-16881/W11-180 D3 20151021_0024.oir:
[testng] [2024-03-18 00:31:33,912] [pool-1-thread-5] Initializing /data/public/etienne/coupe shg stack_0001.ome.tif:
[testng] [2024-03-18 00:31:34,241] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-stimulation_0001_LSM.tif:
[testng] [2024-03-18 00:31:37,812] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0006.tif:
[testng] [2024-03-18 00:31:38,114] [pool-1-thread-1] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.oir:
[testng] [2024-03-18 00:31:39,145] [pool-1-thread-2] Initializing /data/public/etienne/venus stack.ome.tif:
[testng] [2024-03-18 00:31:39,712] [pool-1-thread-11] Initializing /data/olympus/2021-07-19/FRAP_0006_LSM.oir:
[testng] [2024-03-18 00:31:44,799] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.ome.tif:
[testng] [2024-03-18 00:31:47,390] [pool-1-thread-5] Initializing /data/qa-17293/2-z-t_0001_LSM.ome.tif:
[testng] [2024-03-18 00:31:47,658] [pool-1-thread-2] Initializing /data/qa-17331/60x zstack RS.oir:
[testng] [2024-03-18 00:31:49,280] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/Clipboard.tif:
[testng] [2024-03-18 00:31:50,287] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.oir:
[testng] [2024-03-18 00:31:50,944] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.oir:
[testng] [2024-03-18 00:31:51,907] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/LILY POLLEN.oir:
[testng] [2024-03-18 00:31:56,679] [pool-1-thread-5] Initializing /data/qa-17335/1.ome.tif:
[testng] [2024-03-18 00:31:56,810] [pool-1-thread-1] Initializing /data/olympus/2021-03-23/Dataset01_incl_stitched_image/image_Cycle_02.oir:
[testng] [2024-03-18 00:31:57,089] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Clipboard-Image_0050_0001.tif:
[testng] [2024-03-18 00:31:59,079] [pool-1-thread-5] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.oir:
[testng] [2024-03-18 00:31:59,530] [pool-1-thread-3] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0024.tif:
[testng] [2024-03-18 00:31:59,732] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0064/Image_0064_0001.oir:
[testng] [2024-03-18 00:32:00,421] [pool-1-thread-1] Initializing /data/olympus/40X_4CH_XY.ome.tif:
[testng] [2024-03-18 00:32:01,923] [pool-1-thread-5] Initializing /data/qa-17270/Clipboard-stack1.tif:
[testng] [2024-03-18 00:32:02,210] [pool-1-thread-3] Initializing /data/martin/20170824_JupGFP_HisRFP_wL3_30xSI_4xzoom_0p5z_A01_G001_0001.oir:
[testng] [2024-03-18 00:34:22,335] [pool-1-thread-2] Initializing /data/qa-17335/Clipboard-1.tif:
[testng] [2024-03-18 00:34:22,581] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002_5ADVMLE.oir.vsi:
[testng] [2024-03-18 00:34:24,443] [pool-1-thread-5] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.ome.tif:
[testng] [2024-03-18 00:34:24,920] [pool-1-thread-2] Initializing /data/olympus/Clipboard-40X_4CH_XY.tif:
[testng] [2024-03-18 00:34:25,017] [pool-1-thread-7] Initializing /data/qa-16881/Clipboard-P10D1 20150729_0019.tif:
[testng] [2024-03-18 00:34:26,525] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2.tif:
[testng] [2024-03-18 00:34:26,834] [pool-1-thread-5] Initializing /data/qa-16881/Clipboard-W11-180 D3 20151021_0024.tif:
[testng] [2024-03-18 00:34:26,915] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W4-45 D5 New 20150816_0011.tif:
[testng] [2024-03-18 00:34:26,997] [pool-1-thread-7] Initializing /data/qa-16881/P10-50 D2_0006.oir:
[testng] [2024-03-18 00:34:29,434] [pool-1-thread-1] Initializing /data/qa-16881/P10-50 D2.oir:
[testng] [2024-03-18 00:34:30,751] [pool-1-thread-5] Initializing /data/olympus/2017-04-21/zebra shg.oir:
[testng] [2024-03-18 00:34:43,810] [pool-1-thread-2] Initializing /data/qa-16881/Clipboard-W1-75 D11 New 20150825_0004.tif:
[testng] [2024-03-18 00:34:45,782] [pool-1-thread-4] Initializing /data/qa-16881/Clipboard-W4-0 D14 New 20150828_0007.tif:
[testng] [2024-03-18 00:34:46,883] [pool-1-thread-2] Initializing /data/olympus/2017-11-20/xytz_golgi/xytz_golgi.oir:
[testng] [2024-03-18 00:34:53,582] [pool-1-thread-11] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001.oir:
[testng] [2024-03-18 00:34:55,183] [pool-1-thread-7] Initializing /data/qa-16881/W11-180 D3 20151021_0024.ome.tif:
[testng] [2024-03-18 00:34:56,430] [pool-1-thread-4] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.ome.tif:
[testng] [2024-03-18 00:34:57,143] [pool-1-thread-1] Initializing /data/gh-3779/10kDa.P19.ZDC.7xConcentrationAlexProtocol.HomogenizedDex.oir:
[testng] [2024-03-18 00:35:01,189] [pool-1-thread-7] Initializing /data/olympus/XYZt.vsi:
[testng] [2024-03-18 00:35:02,379] [pool-1-thread-7] Initializing /data/qa-17409/Stitch_A01_G001.oir:
[testng] [2024-03-18 00:35:07,945] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.oir:
[testng] [2024-03-18 00:35:09,573] [pool-1-thread-4] Initializing /data/olympus/Stitched_XYZ.oir:
[testng] [2024-03-18 00:35:12,512] [pool-1-thread-11] Initializing /data/qa-17270/Clipboard-image1.tif:
[testng] [2024-03-18 00:35:13,086] [pool-1-thread-6] Initializing /data/qa-17293/Clipboard.tif:
[testng] [2024-03-18 00:35:14,780] [pool-1-thread-11] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-LILY POLLEN.tif:
[testng] [2024-03-18 00:35:15,228] [pool-1-thread-6] Initializing /data/qa-16881/Clipboard-P10D1 20150729.tif:
[testng] [2024-03-18 00:35:16,539] [pool-1-thread-12] Initializing /data/olympus/not_opening_in_ImageJ/Image_0050/Image_0050_0001.ome.tif:
[testng] [2024-03-18 00:35:17,210] [pool-1-thread-11] Initializing /data/qa-17922/example_multipart.oir:
[testng] [2024-03-18 00:36:07,662] [pool-1-thread-6] Initializing /data/qa-17335/OSR-Z.ome.tif:
[testng] [2024-03-18 00:36:08,383] [pool-1-thread-12] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z_CONTROL.oir:
[testng] [2024-03-18 00:36:11,386] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0001_5ADVMLE.oir.vsi:
[testng] [2024-03-18 00:36:11,968] [pool-1-thread-6] Initializing /data/qa-16881/P10D1 20150729_0019.ome.tif:
[testng] [2024-03-18 00:36:13,887] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.oir:
[testng] [2024-03-18 00:36:24,635] [pool-1-thread-1] Initializing /data/qa-16881/Clipboard-P10-50 D2_0006.tif:
[testng] [2024-03-18 00:36:25,454] [pool-1-thread-4] Initializing /data/qa-17293/2-z-t_0001_LSM.oir:
[testng] [2024-03-18 00:36:27,027] [pool-1-thread-1] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Clipboard-Image_0001_0001.tif:
[testng] [2024-03-18 00:36:27,169] [pool-1-thread-12] Initializing /data/qa-17335/Clipboard-OSR-Z.tif:
[testng] [2024-03-18 00:36:28,554] [pool-1-thread-1] Initializing /data/olympus/calcium sparks.jpg:
[testng] [2024-03-18 00:36:28,750] [pool-1-thread-12] Initializing /data/cudmore/20190401__0005.oir:
[testng] [2024-03-18 00:36:55,323] [pool-1-thread-1] Initializing /data/olympus/2017-11-20/fish_overview/fish-overview-night.oir:
[testng] [2024-03-18 00:37:45,620] [pool-1-thread-4] Initializing /data/qa-17270/image1.ome.tif:
[testng] [2024-03-18 00:37:45,693] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.ome.tif:
[testng] [2024-03-18 00:37:45,828] [pool-1-thread-5] Initializing /data/qa-17919/f10187.oir:
[testng] [2024-03-18 00:38:16,437] [pool-1-thread-7] Initializing /data/public/etienne/amy slice z stack_0001.oir:
[testng] [2024-03-18 00:38:16,778] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Image_0043_0001.ome.tif:
[testng] [2024-03-18 00:38:18,653] [pool-1-thread-8] Initializing /data/olympus/2021-04-20/overview 2 x_Cycle_01/matl.omp2info:
[testng] [2024-03-18 00:38:18,904] [pool-1-thread-2] Initializing /data/public/etienne/amy slice z stack_0001.ome.tif:
[testng] [2024-03-18 00:38:19,491] [pool-1-thread-4] Initializing /data/olympus/40X_4CH_XY.vsi:
[testng] [2024-03-18 00:38:19,599] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0043/Clipboard-Image_0043_0001.tif:
[testng] [2024-03-18 00:38:21,537] [pool-1-thread-2] Initializing /data/olympus/2017-04-20/mito_0006_0001.oir:
[testng] [2024-03-18 00:38:22,444] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.ome.tif:
[testng] [2024-03-18 00:38:23,312] [pool-1-thread-4] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.ome.tif:
[testng] [2024-03-18 00:38:23,814] [pool-1-thread-7] Initializing /data/olympus/stitched 4x4 zstack 10X_XYZ.oir:
[testng] [2024-03-18 00:38:26,673] [pool-1-thread-8] Initializing /data/olympus/2021-07-19/2021-07-19 15_37_09-Original Metadata - FRAP_0006_LSM.oir.png:
[testng] [2024-03-18 00:38:27,123] [pool-1-thread-8] Initializing /data/qa-16881/W11-180 D3 20151021_0006.oir:
[testng] [2024-03-18 00:38:27,589] [pool-1-thread-4] Initializing /data/olympus/calcium sparks_XYt.oir:
[testng] [2024-03-18 00:38:32,531] [pool-1-thread-2] Initializing /data/olympus/not_opening_in_ImageJ/Image_0091/Image_0091_0001.ome.tif:
[testng] [2024-03-18 00:38:33,097] [pool-1-thread-6] Initializing /data/qa-16881/W11-180 D3 20151021_0006.ome.tif:
[testng] [2024-03-18 00:38:35,446] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.ome.tif:
[testng] [2024-03-18 00:38:36,405] [pool-1-thread-6] Initializing /data/qa-21577/R13L-S2-5_X20_ZOOM1_Z.oir:
[testng] [2024-03-18 00:38:38,599] [pool-1-thread-8] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.oir:
[testng] [2024-03-18 00:38:44,414] [pool-1-thread-2] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-Caged Glu-3 point.tif:
[testng] [2024-03-18 00:38:47,282] [pool-1-thread-2] Initializing /data/qa-16881/W4-0 D14 New 20150828_0007.oir:
[testng] [2024-03-18 00:38:48,345] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.ome.tif:
[testng] [2024-03-18 00:38:50,375] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.ome.tif:
[testng] [2024-03-18 00:38:52,434] [pool-1-thread-7] Initializing /data/qa-17222/ps245 red tubulin green 60x-1.oir.vsi:
[testng] [2024-03-18 00:38:53,110] [pool-1-thread-2] Initializing /data/olympus/Clipboard-calcium sparks_XYt.tif:
[testng] [2024-03-18 00:38:53,580] [pool-1-thread-6] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x.tif:
[testng] [2024-03-18 00:38:56,048] [pool-1-thread-7] Initializing /data/olympus/XYZt.ome.tif:
[testng] [2024-03-18 00:38:58,589] [pool-1-thread-6] Initializing /data/olympus/2021-03-23/Dataset02_incl_stitched_image/Stitch_A01_G001.oir:
[testng] [2024-03-18 00:38:59,474] [pool-1-thread-2] Initializing /data/qa-16881/P10D1 20150729_0024.oir:
[testng] [2024-03-18 00:39:03,610] [pool-1-thread-7] Initializing /data/olympus/not_opening_in_ImageJ/Image_0001/Image_0001_0001.ome.tif:
[testng] [2024-03-18 00:39:04,597] [pool-1-thread-10] Initializing /data/qa-16881/P10-50 D2_0006.ome.tif:
[testng] [2024-03-18 00:39:06,013] [pool-1-thread-6] Initializing /data/qa-17335/stimulation_0001_LSM.ome.tif:
[testng] [2024-03-18 00:39:07,426] [pool-1-thread-7] Initializing /data/qa-16881/P10D1 20150729.ome.tif:
[testng] [2024-03-18 00:39:08,551] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Clipboard-Image_0033_0001.tif:
[testng] [2024-03-18 00:39:09,717] [pool-1-thread-6] Initializing /data/qa-17222/ps245 red tubulin green 60x_0002.ome.tif:
[testng] [2024-03-18 00:39:11,344] [pool-1-thread-7] Initializing /data/olympus/2017-04-21/SampleImagesWS/PA-GFPv-2.oir:
[testng] [2024-03-18 00:39:20,726] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0033/Image_0033_0001.oir:
[testng] [2024-03-18 00:39:21,036] [pool-1-thread-2] Initializing /data/olympus/XYZt.oir:
[testng] [2024-03-18 00:39:36,489] [pool-1-thread-4] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0001.tif:
[testng] [2024-03-18 00:39:37,503] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-CagedATP Cag10.tif:
[testng] [2024-03-18 00:39:38,948] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0079/Image_0079_0001.oir:
[testng] [2024-03-18 00:39:40,141] [pool-1-thread-8] Initializing /data/qa-17222/Clipboard-ps245 red tubulin green 60x_0002.tif:
[testng] [2024-03-18 00:39:40,864] [pool-1-thread-4] Initializing /data/olympus/not_opening_in_ImageJ/Image_0099/Image_0099_0001.oir:
[testng] [2024-03-18 00:39:41,727] [pool-1-thread-10] Initializing /data/qa-16881/W1-135 D6 New 20150818_0010.oir:
[testng] [2024-03-18 00:39:43,083] [pool-1-thread-6] Initializing /data/olympus/not_opening_in_ImageJ/Image_0055/Image_0055_0001.oir:
[testng] [2024-03-18 00:39:44,809] [pool-1-thread-8] Initializing /data/olympus/spectral_scan_XYL.ome.tif:
[testng] [2024-03-18 00:39:46,058] [pool-1-thread-4] Initializing /data/qa-17335/stimulation_0001_LSM.oir:
[testng] [2024-03-18 00:39:50,002] [pool-1-thread-6] Initializing /data/olympus/2017-04-21/SampleImagesWS/Caged Glu-3 point.ome.tif:
[testng] [2024-03-18 00:39:50,585] [pool-1-thread-10] Initializing /data/olympus/not_opening_in_ImageJ/Image_0106/Image_0106_0001.ome.tif:
[testng] [2024-03-18 00:39:51,116] [pool-1-thread-8] Initializing /data/qa-16871/XY_0003.oir:
[testng] [2024-03-18 00:39:53,030] [pool-1-thread-6] Initializing /data/qa-16871/XY_0003.ome.tif:
[testng] [2024-03-18 00:39:53,685] [pool-1-thread-10] Initializing /data/olympus/2017-04-21/SampleImagesWS/CagedATP CaG10.oir:
[testng] [2024-03-18 00:39:57,093] [pool-1-thread-8] Initializing /data/qa-17409/Clipboard.tif:
[testng] [2024-03-18 00:39:58,816] [pool-1-thread-6] Initializing /data/qa-17917/f10010.oir:
[testng] [2024-03-18 00:41:25,201] [pool-1-thread-9] Initializing /data/qa-17335/1.oir:
[testng] [2024-03-18 00:41:26,658] [pool-1-thread-8] Initializing /data/qa-17331/Clipboard.tif:
[testng] [2024-03-18 00:41:28,119] [pool-1-thread-9] Initializing /data/olympus/2017-04-21/SampleImagesWS/Clipboard-PA-GFPv-2.tif:
[testng] [2024-03-18 00:41:30,307] [pool-1-thread-8] Initializing /data/olympus/not_opening_in_ImageJ/Image_0058/Image_0058_0001.ome.tif:
[testng] [2024-03-18 00:41:31,479] [pool-1-thread-9] Initializing /data/public/etienne/venus stack.oir:
[testng] [2024-03-18 00:41:37,473] [pool-1-thread-4] Initializing /data/public/etienne/Clipboard-amy slice z stack_0001.tif:
[testng] 01:31:58,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:31:58,864 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:31:58,865 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-18_01-31-58.log]
[testng] 01:31:58,866 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e3fa7a7 - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 9858, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 71 minutes 50 seconds
Finished: SUCCESS