Started by upstream project "BIOFORMATS-test-repo" build number 45
originally caused by:
Started by upstream project "Trigger" build number 52
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@2
[BIOFORMATS-test-folder@2] $ /bin/bash -xe /tmp/jenkins7457206467610688210.sh
+ '[' mrw = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_6464_merge_ci -v /uod/idr/repos/curated/mrw:/data -v /uod/idr-scratch/merge-ci/curated/mrw:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:12:56,789 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:12:56,791 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 02:12:56,791 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:12:56,792 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:12:56,792 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:12:56,793 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:12:56,793 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:12:56,793 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:12:56,793 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:12:56,794 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:12:56,794 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:12:56,794 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:12:57,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:12:57,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:12:57,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:12:57,147 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:12:57,160 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:12:57,161 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:12:57,161 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:12:57,162 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:12:57,162 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 02:12:57,163 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 02:12:57,163 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 370 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-26 02:12:57,179] [main] java.version = 1.8.0_342
[testng] 02:12:57,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:12:57,185 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:57,254 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-26_02-12-57.log]
[testng] 02:12:57,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-04-26 02:12:57,260] [main] testng.directory = /data
[testng] [2024-04-26 02:12:57,260] [main] testng.configDirectory = /config
[testng] [2024-04-26 02:12:57,295] [main] testng.multiplier = 1.0
[testng] [2024-04-26 02:12:57,295] [main] testng.in-memory = false
[testng] [2024-04-26 02:12:57,296] [main] testng.allow-missing = false
[testng] [2024-04-26 02:12:57,296] [main] user.language = en
[testng] [2024-04-26 02:12:57,296] [main] user.country = ${user.country}
[testng] [2024-04-26 02:12:57,296] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-04-26 02:12:57,766] [main] ----------------------------------------
[testng] [2024-04-26 02:12:57,767] [main] Total files: 19
[testng] [2024-04-26 02:12:57,767] [main] Scan time: 0.47 s (24 ms/file)
[testng] [2024-04-26 02:12:57,767] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 19 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-26 02:12:59,721] [pool-1-thread-1] Initializing /data/samples/05-Sep-11_nyc_swiatla_0612.mrw:
[testng] 02:12:59,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:12:59,722 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:59,723 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-26_02-12-59.log]
[testng] 02:12:59,723 |-INFO in ch.qos.logback.core.sift.SiftProcessor@c5fd7e8 - End of configuration.
[testng] [2024-04-26 02:12:59,763] [pool-1-thread-12] Initializing /data/samples/05-Aug-21_duperele_0353.mrw:
[testng] 02:12:59,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:12:59,763 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:59,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-26_02-12-59.log]
[testng] 02:12:59,765 |-INFO in ch.qos.logback.core.sift.SiftProcessor@647953af - End of configuration.
[testng] [2024-04-26 02:12:59,841] [pool-1-thread-11] Initializing /data/samples/05-Sep-07_nyc_0531.mrw:
[testng] 02:12:59,841 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:12:59,842 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:59,843 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-26_02-12-59.log]
[testng] 02:12:59,844 |-INFO in ch.qos.logback.core.sift.SiftProcessor@46a4b927 - End of configuration.
[testng] [2024-04-26 02:12:59,871] [pool-1-thread-10] Initializing /data/samples/100R PICT0001.MRW:
[testng] 02:12:59,871 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:12:59,872 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:59,873 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-26_02-12-59.log]
[testng] 02:12:59,874 |-INFO in ch.qos.logback.core.sift.SiftProcessor@274a5a38 - End of configuration.
[testng] [2024-04-26 02:12:59,904] [pool-1-thread-9] Initializing /data/samples/05-Sep-22_statua_0800.mrw:
[testng] 02:12:59,904 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:12:59,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:59,906 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-26_02-12-59.log]
[testng] 02:12:59,906 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3629b908 - End of configuration.
[testng] [2024-04-26 02:12:59,929] [pool-1-thread-8] Initializing /data/samples/200R PICT0002.MRW:
[testng] 02:12:59,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:12:59,929 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:12:59,930 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-26_02-12-59.log]
[testng] 02:12:59,931 |-INFO in ch.qos.logback.core.sift.SiftProcessor@485e6c9e - End of configuration.
[testng] [2024-04-26 02:13:00,021] [pool-1-thread-7] Initializing /data/samples/1600R PICT0005.MRW:
[testng] 02:13:00,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:13:00,022 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:00,023 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-26_02-13-00.log]
[testng] 02:13:00,023 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5cf57058 - End of configuration.
[testng] [2024-04-26 02:13:00,045] [pool-1-thread-6] Initializing /data/samples/05-Aug-17_bokeh_0215_400.mrw:
[testng] 02:13:00,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:13:00,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:00,047 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-26_02-13-00.log]
[testng] 02:13:00,047 |-INFO in ch.qos.logback.core.sift.SiftProcessor@559492d1 - End of configuration.
[testng] [2024-04-26 02:13:00,070] [pool-1-thread-5] Initializing /data/samples/05-Sep-14_sigma_0698.mrw:
[testng] 02:13:00,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:13:00,071 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:00,072 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-26_02-13-00.log]
[testng] 02:13:00,073 |-INFO in ch.qos.logback.core.sift.SiftProcessor@75c634d8 - End of configuration.
[testng] [2024-04-26 02:13:00,098] [pool-1-thread-4] Initializing /data/samples/400R PICT0003.MRW:
[testng] 02:13:00,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:13:00,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:00,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-26_02-13-00.log]
[testng] 02:13:00,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6db5885e - End of configuration.
[testng] [2024-04-26 02:13:00,120] [pool-1-thread-3] Initializing /data/samples/05-Sep-11_nyc_swiatla_0619.mrw:
[testng] 02:13:00,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:13:00,120 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:00,121 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-26_02-13-00.log]
[testng] 02:13:00,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@440b04a0 - End of configuration.
[testng] [2024-04-26 02:13:00,458] [pool-1-thread-2] Initializing /data/samples/05-Sep-10_nyc_swiatla_0584.mrw:
[testng] 02:13:00,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:13:00,459 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:13:00,460 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-26_02-13-00.log]
[testng] 02:13:00,461 |-INFO in ch.qos.logback.core.sift.SiftProcessor@67d06228 - End of configuration.
[testng] [2024-04-26 02:13:11,521] [pool-1-thread-8] Initializing /data/samples/05-Sep-22_statua_0818.mrw:
[testng] [2024-04-26 02:13:11,549] [pool-1-thread-7] Initializing /data/samples/800R PICT0010.MRW:
[testng] [2024-04-26 02:13:11,571] [pool-1-thread-4] Initializing /data/samples/05-Aug-17_bokeh_0214_400.mrw:
[testng] [2024-04-26 02:13:11,592] [pool-1-thread-6] Initializing /data/samples/05-Sep-03_duperele_0472.mrw:
[testng] [2024-04-26 02:13:11,612] [pool-1-thread-5] Initializing /data/samples/05-Sep-22_statua_0837.mrw:
[testng] [2024-04-26 02:13:11,634] [pool-1-thread-1] Initializing /data/samples/05-Aug-17_manhatan_0321.mrw:
[testng] [2024-04-26 02:13:11,658] [pool-1-thread-9] Initializing /data/samples/3200R PICT0006.MRW:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1007, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 27 seconds
Finished: SUCCESS