Started by upstream project "BIOFORMATS-test-repo" build number 46
originally caused by:
 Started by upstream project "Trigger" build number 53
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins18317320937032709355.sh
+ '[' tillvision = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_6607_merge_ci -v /uod/idr/repos/curated/tillvision:/data -v /uod/idr-scratch/merge-ci/curated/tillvision:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 01:44:45,023 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 01:44:45,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 01:44:45,025 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:44:45,026 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 01:44:45,026 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 01:44:45,027 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 01:44:45,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 01:44:45,027 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:44:45,028 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 01:44:45,029 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 01:44:45,029 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 01:44:45,029 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 01:44:45,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 01:44:45,231 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 01:44:45,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 01:44:45,263 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 01:44:45,269 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 01:44:45,270 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 01:44:45,270 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 01:44:45,270 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 01:44:45,270 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 01:44:45,272 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 01:44:45,272 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 244 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-27 01:44:45,283] [main] java.version = 11.0.16
   [testng] 01:44:45,286 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 01:44:45,287 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:44:45,335 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-27_01-44-45.log]
   [testng] 01:44:45,337 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-04-27 01:44:45,340] [main] testng.directory = /data
   [testng] [2024-04-27 01:44:45,340] [main] testng.configDirectory = /config
   [testng] [2024-04-27 01:44:45,352] [main] testng.multiplier = 1.0
   [testng] [2024-04-27 01:44:45,354] [main] testng.in-memory = false
   [testng] [2024-04-27 01:44:45,354] [main] testng.allow-missing = false
   [testng] [2024-04-27 01:44:45,354] [main] user.language = en
   [testng] [2024-04-27 01:44:45,354] [main] user.country = ${user.country}
   [testng] [2024-04-27 01:44:45,354] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-27 01:44:46,728] [main] ----------------------------------------
   [testng] [2024-04-27 01:44:46,728] [main] Total files: 46
   [testng] [2024-04-27 01:44:46,729] [main] Scan time: 1.374 s (29 ms/file)
   [testng] [2024-04-27 01:44:46,729] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 25 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-27 01:45:02,120] [pool-1-thread-1] Initializing /data/venu/060310/drug addition _BAM.vws: 
   [testng] 01:45:02,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 01:45:02,121 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:02,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-27_01-45-02.log]
   [testng] 01:45:02,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a1cda23 - End of configuration.
   [testng] [2024-04-27 01:45:02,236] [pool-1-thread-12] Initializing /data/imagesc-84715/not working.vws: 
   [testng] 01:45:02,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 01:45:02,236 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:02,237 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-27_01-45-02.log]
   [testng] 01:45:02,238 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2ec3a828 - End of configuration.
   [testng] [2024-04-27 01:45:02,392] [pool-1-thread-11] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated BAM_Wrkspc1.vws: 
   [testng] 01:45:02,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 01:45:02,392 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:02,393 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-27_01-45-02.log]
   [testng] 01:45:02,394 |-INFO in ch.qos.logback.core.sift.SiftProcessor@374ac1c7 - End of configuration.
   [testng] [2024-04-27 01:45:02,436] [pool-1-thread-10] Initializing /data/christian/080807ionophore/080807ionophore3.vws: 
   [testng] 01:45:02,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 01:45:02,437 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:02,437 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-27_01-45-02.log]
   [testng] 01:45:02,438 |-INFO in ch.qos.logback.core.sift.SiftProcessor@649ec830 - End of configuration.
   [testng] [2024-04-27 01:45:02,509] [pool-1-thread-9] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc1.vws: 
   [testng] 01:45:02,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 01:45:02,509 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:02,510 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-27_01-45-02.log]
   [testng] 01:45:02,510 |-INFO in ch.qos.logback.core.sift.SiftProcessor@fa78e24 - End of configuration.
   [testng] [2024-04-27 01:45:02,523] [pool-1-thread-8] Initializing /data/venu/060310/Fluorescence 340nm1_test 1.tif: 
   [testng] 01:45:02,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 01:45:02,523 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:02,524 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-27_01-45-02.log]
   [testng] 01:45:02,525 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2cf0c277 - End of configuration.
   [testng] [2024-04-27 01:45:02,604] [pool-1-thread-7] Initializing /data/gerhard/test.vws: 
   [testng] 01:45:02,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 01:45:02,604 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:02,605 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-27_01-45-02.log]
   [testng] 01:45:02,606 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3005b584 - End of configuration.
   [testng] [2024-04-27 01:45:02,791] [pool-1-thread-6] Initializing /data/oliver/TillVision-Data-2-from-Oliver-Mueller-Homburg-Germany/2006 DG2 V1 Indo-1 Ratte.vws: 
   [testng] 01:45:02,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 01:45:02,791 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:02,792 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-27_01-45-02.log]
   [testng] 01:45:02,792 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7518b3c - End of configuration.
   [testng] [2024-04-27 01:45:03,302] [pool-1-thread-5] Initializing /data/ian/non_working_tillvision_vws/20120404.vws: 
   [testng] 01:45:03,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 01:45:03,303 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:03,303 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-27_01-45-03.log]
   [testng] 01:45:03,304 |-INFO in ch.qos.logback.core.sift.SiftProcessor@22b62b39 - End of configuration.
   [testng] [2024-04-27 01:45:06,214] [pool-1-thread-4] Initializing /data/venu/060310/drug addition protocol testing_Wrkspc3.vws: 
   [testng] 01:45:06,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 01:45:06,214 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:06,215 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-27_01-45-06.log]
   [testng] 01:45:06,215 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76a2c8e7 - End of configuration.
   [testng] [2024-04-27 01:45:06,234] [pool-1-thread-3] Initializing /data/venu/060310/Visible parts of Fluorescence 380nm1_test1.tif: 
   [testng] 01:45:06,234 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 01:45:06,235 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:06,235 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-27_01-45-06.log]
   [testng] 01:45:06,236 |-INFO in ch.qos.logback.core.sift.SiftProcessor@10d9881e - End of configuration.
   [testng] [2024-04-27 01:45:06,271] [pool-1-thread-2] Initializing /data/venu/060310/1_glass bottom dish_fluorescence snapshot.tif: 
   [testng] 01:45:06,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 01:45:06,271 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 01:45:06,272 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-27_01-45-06.log]
   [testng] 01:45:06,273 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c335d57 - End of configuration.
   [testng] [2024-04-27 01:45:08,222] [pool-1-thread-3] Initializing /data/samples/fibre.vws: 
   [testng] [2024-04-27 01:45:08,239] [pool-1-thread-2] Initializing /data/venu/060310/1_glass bottom dish snapshot.tif: 
   [testng] [2024-04-27 01:45:08,270] [pool-1-thread-8] Initializing /data/venu/060310/1_ drug addition actual test_ glass_Wrkspc6.vws: 
   [testng] [2024-04-27 01:45:08,288] [pool-1-thread-9] Initializing /data/stephan/two sequences.vws: 
   [testng] [2024-04-27 01:45:08,537] [pool-1-thread-4] Initializing /data/andreas/090811E1.vws: 
   [testng] [2024-04-27 01:45:10,924] [pool-1-thread-7] Initializing /data/qinghai/TillvisIOn Sample Dataset/Bgr.vws: 
   [testng] [2024-04-27 01:45:11,374] [pool-1-thread-11] Initializing /data/ian/working_tillvision_vws/20120322.vws: 
   [testng] [2024-04-27 01:45:14,204] [pool-1-thread-3] Initializing /data/venu/060310/060310_glass_Wrkspc1.vws: 
   [testng] [2024-04-27 01:45:15,386] [pool-1-thread-10] Initializing /data/venu/061410/Differentiating MPCs on Matrigel coated glass_Wrkspc2.vws: 
   [testng] [2024-04-27 01:45:15,454] [pool-1-thread-2] Initializing /data/christian/080807epi/080807epi2.vws: 
   [testng] [2024-04-27 01:45:15,727] [pool-1-thread-8] Initializing /data/venu/061410/Rat LD muscle fibers Wrkspc3.vws: 
   [testng] [2024-04-27 01:45:16,415] [pool-1-thread-1] Initializing /data/imagesc-84715/working.vws: 
   [testng] [2024-04-27 01:45:17,160] [pool-1-thread-12] Initializing /data/andreas/090812E4.vws: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 1325, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 5 minutes 1 second
Finished: SUCCESS