Started by upstream project "BIOFORMATS-test-repo" build number 46
originally caused by:
 Started by upstream project "Trigger" build number 53
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins6900155000243690909.sh
+ '[' avi = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_6619_merge_ci -v /uod/idr/repos/curated/avi:/data -v /uod/idr-scratch/merge-ci/curated/avi:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:01:17,766 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:01:17,805 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:01:17,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:01:17,833 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:01:17,841 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:01:17,842 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:01:17,842 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:01:17,842 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:01:17,843 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@41a0aa7d - End of configuration.
   [testng] 02:01:17,843 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6574a52c - Registering current configuration as safe fallback point
   [testng] 02:01:17,843 |-INFO in ch.qos.logback.classic.util.ContextInitializer@6c1a5b54 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 491 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-04-27 02:01:17,854] [main] java.version = 11.0.16
   [testng] 02:01:17,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:01:17,857 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:01:18,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-27_02-01-17.log]
   [testng] 02:01:18,002 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-04-27 02:01:18,005] [main] testng.directory = /data
   [testng] [2024-04-27 02:01:18,005] [main] testng.configDirectory = /config
   [testng] [2024-04-27 02:01:18,179] [main] testng.multiplier = 1.0
   [testng] [2024-04-27 02:01:18,181] [main] testng.in-memory = false
   [testng] [2024-04-27 02:01:18,181] [main] testng.allow-missing = false
   [testng] [2024-04-27 02:01:18,181] [main] user.language = en
   [testng] [2024-04-27 02:01:18,181] [main] user.country = ${user.country}
   [testng] [2024-04-27 02:01:18,181] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-04-27 02:01:19,868] [main] ----------------------------------------
   [testng] [2024-04-27 02:01:19,868] [main] Total files: 40
   [testng] [2024-04-27 02:01:19,868] [main] Scan time: 1.687 s (42 ms/file)
   [testng] [2024-04-27 02:01:19,868] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 38 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-04-27 02:05:13,284] [pool-1-thread-1] Initializing /data/kurt/63x_6um.avi: 
   [testng] 02:05:13,284 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:05:13,285 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:13,287 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-27_02-05-13.log]
   [testng] 02:05:13,288 |-INFO in ch.qos.logback.core.sift.SiftProcessor@30f846e9 - End of configuration.
   [testng] [2024-04-27 02:05:13,363] [pool-1-thread-12] Initializing /data/ascb/TIRF.avi: 
   [testng] 02:05:13,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:05:13,363 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:13,365 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-27_02-05-13.log]
   [testng] 02:05:13,366 |-INFO in ch.qos.logback.core.sift.SiftProcessor@a9ce216 - End of configuration.
   [testng] [2024-04-27 02:05:13,534] [pool-1-thread-11] Initializing /data/curtis/mri-stack-ij-new.avi: 
   [testng] 02:05:13,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:05:13,534 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:13,535 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-27_02-05-13.log]
   [testng] 02:05:13,536 |-INFO in ch.qos.logback.core.sift.SiftProcessor@313594dc - End of configuration.
   [testng] [2024-04-27 02:05:13,552] [pool-1-thread-10] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_5.avi: 
   [testng] 02:05:13,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:05:13,552 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:13,553 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-27_02-05-13.log]
   [testng] 02:05:13,553 |-INFO in ch.qos.logback.core.sift.SiftProcessor@346e2887 - End of configuration.
   [testng] [2024-04-27 02:05:13,588] [pool-1-thread-9] Initializing /data/qa-7450/MVI_3610.AVI: 
   [testng] 02:05:13,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:05:13,588 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:13,589 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-27_02-05-13.log]
   [testng] 02:05:13,589 |-INFO in ch.qos.logback.core.sift.SiftProcessor@60b0dc54 - End of configuration.
   [testng] [2024-04-27 02:05:13,638] [pool-1-thread-8] Initializing /data/roger/spheroid1-crop.lsm movie 2.avi: 
   [testng] 02:05:13,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:05:13,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:13,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-27_02-05-13.log]
   [testng] 02:05:13,639 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3b8d7ce3 - End of configuration.
   [testng] [2024-04-27 02:05:13,719] [pool-1-thread-7] Initializing /data/chip_avi/Level002-DB-090.avi: 
   [testng] 02:05:13,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:05:13,720 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:13,721 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-27_02-05-13.log]
   [testng] 02:05:13,721 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2053e1a8 - End of configuration.
   [testng] [2024-04-27 02:05:13,746] [pool-1-thread-6] Initializing /data/jules/GUV_long15N_10_10mb_debut_26102011_4.avi: 
   [testng] 02:05:13,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:05:13,746 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:13,747 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-27_02-05-13.log]
   [testng] 02:05:13,748 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40e31214 - End of configuration.
   [testng] [2024-04-27 02:05:21,058] [pool-1-thread-5] Initializing /data/qa-5019/nemo-2_1_.avi: 
   [testng] 02:05:21,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:05:21,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:21,060 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-27_02-05-21.log]
   [testng] 02:05:21,061 |-INFO in ch.qos.logback.core.sift.SiftProcessor@719bde66 - End of configuration.
   [testng] [2024-04-27 02:05:21,097] [pool-1-thread-4] Initializing /data/pki/yinghua_USPI2-ASMKT772_111017100001_C10_f1.avi: 
   [testng] 02:05:21,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:05:21,098 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:21,099 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-27_02-05-21.log]
   [testng] 02:05:21,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6f82270 - End of configuration.
   [testng] [2024-04-27 02:05:21,135] [pool-1-thread-3] Initializing /data/chris/APZ04_009.avi: 
   [testng] 02:05:21,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:05:21,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:21,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-27_02-05-21.log]
   [testng] 02:05:21,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d33b420 - End of configuration.
   [testng] [2024-04-27 02:05:29,238] [pool-1-thread-2] Initializing /data/simon/24_bit_problem.avi: 
   [testng] 02:05:29,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:05:29,238 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:05:29,239 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-27_02-05-29.log]
   [testng] 02:05:29,240 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76ae332 - End of configuration.
   [testng] [2024-04-27 02:05:31,369] [pool-1-thread-10] Initializing /data/roger/op9middle40x.lsm movie.avi: 
   [testng] [2024-04-27 02:05:31,389] [pool-1-thread-9] Initializing /data/kurt/40x_6um_2.avi: 
   [testng] [2024-04-27 02:05:31,444] [pool-1-thread-11] Initializing /data/chip_avi/Level001-ES-083.avi: 
   [testng] [2024-04-27 02:05:31,478] [pool-1-thread-7] Initializing /data/roger/spheroid1-crop.lsm movie.avi: 
   [testng] [2024-04-27 02:05:31,546] [pool-1-thread-5] Initializing /data/william/worm.avi: 
   [testng] [2024-04-27 02:05:31,559] [pool-1-thread-4] Initializing /data/qa-4232/11051920xdrywithincubatoronthenoff_Subset.avi: 
   [testng] [2024-04-27 02:05:31,596] [pool-1-thread-12] Initializing /data/prairie/cornea dc and macs.AVI: 
   [testng] [2024-04-27 02:05:31,631] [pool-1-thread-2] Initializing /data/curtis/mri-stack-ij-old.avi: 
   [testng] [2024-04-27 02:05:31,723] [pool-1-thread-8] Initializing /data/roger/op9middle40x.lsm movie 3.avi: 
   [testng] [2024-04-27 02:05:32,096] [pool-1-thread-5] Initializing /data/roger/op9middle40x.lsm movie 4.avi: 
   [testng] [2024-04-27 02:05:32,279] [pool-1-thread-1] Initializing /data/qa-11011/M-flow10001.avi: 
   [testng] [2024-04-27 02:05:32,395] [pool-1-thread-2] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_3.avi: 
   [testng] [2024-04-27 02:05:32,629] [pool-1-thread-11] Initializing /data/kurt/40x_6um.avi: 
   [testng] [2024-04-27 02:05:32,822] [pool-1-thread-4] Initializing /data/jae/20xD_5minfor14h.avi: 
   [testng] [2024-04-27 02:05:33,778] [pool-1-thread-10] Initializing /data/roger/spheroid1.lsm movie.avi: 
   [testng] [2024-04-27 02:05:33,944] [pool-1-thread-2] Initializing /data/roger/op9middle40x.lsm movie 2.avi: 
   [testng] [2024-04-27 02:05:34,034] [pool-1-thread-12] Initializing /data/sample-avis/extra-chunk/HyperStack.avi: 
   [testng] [2024-04-27 02:05:34,044] [pool-1-thread-8] Initializing /data/qa-5019/nemo-2_10_20.avi: 
   [testng] [2024-04-27 02:05:34,197] [pool-1-thread-5] Initializing /data/jules/GUV_long15N_10_20mb_debut_25102011_1_BW.avi: 
   [testng] [2024-04-27 02:05:34,330] [pool-1-thread-9] Initializing /data/curtis/mri-stack-bf.avi: 
   [testng] [2024-04-27 02:05:34,359] [pool-1-thread-7] Initializing /data/qa-7336/2X_63X-DAPI-Emilin2_Filter_Render_Series.avi: 
   [testng] [2024-04-27 02:05:34,448] [pool-1-thread-12] Initializing /data/chip_avi/Level003-DB-089.avi: 
   [testng] [2024-04-27 02:05:34,878] [pool-1-thread-9] Initializing /data/chip_avi/Level004-WA-116.avi: 
   [testng] [2024-04-27 02:05:34,957] [pool-1-thread-8] Initializing /data/jcb/JCB 201203159/JCB_201203159_0_4.avi: 
   [testng] [2024-04-27 02:05:35,036] [pool-1-thread-12] Initializing /data/sample-avis/rgb-odd-width/HyperStack.avi: 
   [testng] [2024-04-27 02:05:35,104] [pool-1-thread-1] Initializing /data/qa-7560/Ex9 ALADIN WT KO KI_DIC_ 31_07_2013_M1.avi: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 2014, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 4 minutes 32 seconds
Finished: SUCCESS