Started by upstream project "BIOFORMATS-test-repo" build number 5 originally caused by: Started by upstream project "Trigger" build number 6 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins16884473880761852950.sh + '[' targa = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_664_merge_ci -v /uod/idr/repos/curated/targa:/data -v /uod/idr-scratch/merge-ci/curated/targa:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 00:31:28,602 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 00:31:28,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 00:31:28,604 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:28,606 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 00:31:28,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 00:31:28,606 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 00:31:28,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 00:31:28,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:28,607 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 00:31:28,608 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 00:31:28,608 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 00:31:28,608 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 00:31:28,874 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 00:31:28,875 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 00:31:28,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 00:31:28,905 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 00:31:28,915 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 00:31:28,915 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 00:31:28,915 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 00:31:28,916 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 00:31:28,916 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 00:31:28,917 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 00:31:28,917 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 310 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-18 00:31:28,930] [main] java.version = 1.8.0_342 [testng] 00:31:28,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 00:31:28,935 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:29,001 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-18_00-31-28.log] [testng] 00:31:29,004 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-18 00:31:29,008] [main] testng.directory = /data [testng] [2024-03-18 00:31:29,009] [main] testng.configDirectory = /config [testng] [2024-03-18 00:31:29,031] [main] testng.multiplier = 1.0 [testng] [2024-03-18 00:31:29,032] [main] testng.in-memory = false [testng] [2024-03-18 00:31:29,032] [main] testng.allow-missing = false [testng] [2024-03-18 00:31:29,032] [main] user.language = fr [testng] [2024-03-18 00:31:29,032] [main] user.country = FR [testng] [2024-03-18 00:31:29,032] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-18 00:31:29,628] [main] ---------------------------------------- [testng] [2024-03-18 00:31:29,628] [main] Total files: 21 [testng] [2024-03-18 00:31:29,628] [main] Scan time: 0.595 s (28 ms/file) [testng] [2024-03-18 00:31:29,628] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 21 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-18 00:31:32,041] [pool-1-thread-1] Initializing /data/samples/UTC16.TGA: [testng] 00:31:32,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 00:31:32,042 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:32,043 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-18_00-31-32.log] [testng] 00:31:32,043 |-INFO in ch.qos.logback.core.sift.SiftProcessor@32de963d - End of configuration. [testng] [2024-03-18 00:31:32,097] [pool-1-thread-12] Initializing /data/samples/UBW8.TGA: [testng] 00:31:32,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 00:31:32,097 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:32,098 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-18_00-31-32.log] [testng] 00:31:32,098 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7718d95c - End of configuration. [testng] [2024-03-18 00:31:32,189] [pool-1-thread-10] Initializing /data/samples/FLAG_T32.TGA: [testng] 00:31:32,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 00:31:32,190 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:32,191 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-18_00-31-32.log] [testng] 00:31:32,191 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72794789 - End of configuration. [testng] [2024-03-18 00:31:32,208] [pool-1-thread-11] Initializing /data/samples/XING_T24.TGA: [testng] 00:31:32,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 00:31:32,208 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:32,209 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-18_00-31-32.log] [testng] 00:31:32,210 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4c178879 - End of configuration. [testng] [2024-03-18 00:31:32,230] [pool-1-thread-6] Initializing /data/samples/CTC16.TGA: [testng] 00:31:32,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 00:31:32,230 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:32,231 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-18_00-31-32.log] [testng] 00:31:32,231 |-INFO in ch.qos.logback.core.sift.SiftProcessor@602edd28 - End of configuration. [testng] [2024-03-18 00:31:32,254] [pool-1-thread-9] Initializing /data/samples/FLAG_B32.TGA: [testng] 00:31:32,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 00:31:32,254 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:32,255 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-18_00-31-32.log] [testng] 00:31:32,256 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c2af610 - End of configuration. [testng] [2024-03-18 00:31:32,316] [pool-1-thread-8] Initializing /data/samples/CTC24.TGA: [testng] 00:31:32,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 00:31:32,317 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:32,319 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-18_00-31-32.log] [testng] 00:31:32,319 |-INFO in ch.qos.logback.core.sift.SiftProcessor@98fcc8 - End of configuration. [testng] [2024-03-18 00:31:32,423] [pool-1-thread-7] Initializing /data/samples/XING_B24.TGA: [testng] 00:31:32,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 00:31:32,423 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:32,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-18_00-31-32.log] [testng] 00:31:32,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@35261543 - End of configuration. [testng] [2024-03-18 00:31:32,638] [pool-1-thread-5] Initializing /data/samples/FLAG_T16.TGA: [testng] 00:31:32,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 00:31:32,638 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:32,639 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-18_00-31-32.log] [testng] 00:31:32,640 |-INFO in ch.qos.logback.core.sift.SiftProcessor@45a3324b - End of configuration. [testng] [2024-03-18 00:31:32,867] [pool-1-thread-4] Initializing /data/samples/FLAG_B24.TGA: [testng] 00:31:32,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 00:31:32,867 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:32,868 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-18_00-31-32.log] [testng] 00:31:32,869 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41a1f0d1 - End of configuration. [testng] [2024-03-18 00:31:33,048] [pool-1-thread-2] Initializing /data/samples/CBW8.TGA: [testng] 00:31:33,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 00:31:33,049 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:33,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-18_00-31-33.log] [testng] 00:31:33,050 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3559699d - End of configuration. [testng] [2024-03-18 00:31:33,078] [pool-1-thread-3] Initializing /data/samples/XING_T32.TGA: [testng] 00:31:33,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 00:31:33,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 00:31:33,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-18_00-31-33.log] [testng] 00:31:33,080 |-INFO in ch.qos.logback.core.sift.SiftProcessor@76b4d23c - End of configuration. [testng] [2024-03-18 00:31:35,547] [pool-1-thread-4] Initializing /data/samples/XING_B32.TGA: [testng] [2024-03-18 00:31:35,698] [pool-1-thread-9] Initializing /data/samples/MARBLES.TGA: [testng] [2024-03-18 00:31:35,836] [pool-1-thread-1] Initializing /data/samples/CCM8.TGA: [testng] [2024-03-18 00:31:35,991] [pool-1-thread-8] Initializing /data/samples/XING_T16.TGA: [testng] [2024-03-18 00:31:36,131] [pool-1-thread-10] Initializing /data/samples/UTC32.TGA: [testng] [2024-03-18 00:31:36,202] [pool-1-thread-6] Initializing /data/samples/XING_B16.TGA: [testng] [2024-03-18 00:31:36,269] [pool-1-thread-11] Initializing /data/samples/UCM8.TGA: [testng] [2024-03-18 00:31:36,330] [pool-1-thread-7] Initializing /data/samples/UTC24.TGA: [testng] [2024-03-18 00:31:36,383] [pool-1-thread-3] Initializing /data/samples/FLAG_B16.TGA: [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 1113, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 14 seconds Finished: SUCCESS