Started by upstream project "BIOFORMATS-test-repo" build number 5
originally caused by:
Started by upstream project "Trigger" build number 6
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@8
[BIOFORMATS-test-folder@8] $ /bin/bash -xe /tmp/jenkins12121800216536904111.sh
+ '[' bigtiff = slidebook ']'
++ date +%u
+ '[' 1 -le 1 ']'
+ DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR'
+ sudo docker run --rm --name BIOFORMATS-test-folder_669_merge_ci -v /uod/idr/repos/curated/bigtiff:/data -v /uod/idr-scratch/merge-ci/curated/bigtiff:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 00:32:14,674 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 00:32:14,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service.
[testng] 00:32:14,676 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:32:14,677 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 00:32:14,677 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 00:32:14,678 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 00:32:14,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 00:32:14,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:32:14,678 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 00:32:14,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 00:32:14,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 00:32:14,679 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 00:32:14,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 00:32:14,907 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 00:32:14,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 00:32:14,936 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 00:32:14,945 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 00:32:14,945 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 00:32:14,945 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 00:32:14,945 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 00:32:14,945 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration.
[testng] 00:32:14,946 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point
[testng] 00:32:14,946 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 268 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-03-18 00:32:14,956] [main] java.version = 1.8.0_342
[testng] 00:32:14,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 00:32:14,960 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:15,005 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-18_00-32-14.log]
[testng] 00:32:15,007 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-03-18 00:32:15,010] [main] testng.directory = /data
[testng] [2024-03-18 00:32:15,010] [main] testng.configDirectory = /config
[testng] [2024-03-18 00:32:15,022] [main] testng.multiplier = 1.0
[testng] [2024-03-18 00:32:15,023] [main] testng.in-memory = false
[testng] [2024-03-18 00:32:15,023] [main] testng.allow-missing = false
[testng] [2024-03-18 00:32:15,023] [main] user.language = fr
[testng] [2024-03-18 00:32:15,023] [main] user.country = FR
[testng] [2024-03-18 00:32:15,023] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-03-18 00:32:15,762] [main] ----------------------------------------
[testng] [2024-03-18 00:32:15,762] [main] Total files: 14
[testng] [2024-03-18 00:32:15,762] [main] Scan time: 0.739 s (52 ms/file)
[testng] [2024-03-18 00:32:15,762] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 13 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-03-18 00:32:23,994] [pool-1-thread-1] Initializing /data/samples/Classic.tif:
[testng] 00:32:23,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 00:32:23,994 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:23,995 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-18_00-32-23.log]
[testng] 00:32:23,995 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7ddd01b3 - End of configuration.
[testng] [2024-03-18 00:32:24,088] [pool-1-thread-12] Initializing /data/samples/BigTIFFSubIFD4.tif:
[testng] 00:32:24,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 00:32:24,089 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:24,090 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-18_00-32-24.log]
[testng] 00:32:24,090 |-INFO in ch.qos.logback.core.sift.SiftProcessor@634a5ae2 - End of configuration.
[testng] [2024-03-18 00:32:24,135] [pool-1-thread-11] Initializing /data/carlsen/Olympics8.tif:
[testng] 00:32:24,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 00:32:24,135 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:24,136 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-18_00-32-24.log]
[testng] 00:32:24,136 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1a09b359 - End of configuration.
[testng] [2024-03-18 00:32:24,198] [pool-1-thread-10] Initializing /data/samples/BigTIFFLong.tif:
[testng] 00:32:24,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 00:32:24,198 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:24,199 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-18_00-32-24.log]
[testng] 00:32:24,199 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4d30d59f - End of configuration.
[testng] [2024-03-18 00:32:24,258] [pool-1-thread-9] Initializing /data/samples/BigTIFFMotorolaLongStrips.tif:
[testng] 00:32:24,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 00:32:24,258 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:24,259 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-18_00-32-24.log]
[testng] 00:32:24,259 |-INFO in ch.qos.logback.core.sift.SiftProcessor@40386025 - End of configuration.
[testng] [2024-03-18 00:32:24,301] [pool-1-thread-8] Initializing /data/samples/BigTIFF.tif:
[testng] 00:32:24,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 00:32:24,301 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:24,301 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-18_00-32-24.log]
[testng] 00:32:24,302 |-INFO in ch.qos.logback.core.sift.SiftProcessor@285cf8d7 - End of configuration.
[testng] [2024-03-18 00:32:24,355] [pool-1-thread-7] Initializing /data/samples/BigTIFFLong8Tiles.tif:
[testng] 00:32:24,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 00:32:24,355 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:24,356 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-18_00-32-24.log]
[testng] 00:32:24,356 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e503aae - End of configuration.
[testng] [2024-03-18 00:32:24,405] [pool-1-thread-6] Initializing /data/samples/BigTIFFLong8.tif:
[testng] 00:32:24,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 00:32:24,406 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:24,407 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-18_00-32-24.log]
[testng] 00:32:24,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@d6ea72c - End of configuration.
[testng] [2024-03-18 00:32:24,457] [pool-1-thread-5] Initializing /data/colin/7S59P8I1_F00000012.btf:
[testng] 00:32:24,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 00:32:24,457 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:24,458 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-18_00-32-24.log]
[testng] 00:32:24,458 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6ac53ca1 - End of configuration.
[testng] [2024-03-18 00:32:26,455] [pool-1-thread-4] Initializing /data/samples/BigTIFFSubIFD8.tif:
[testng] 00:32:26,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 00:32:26,456 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:26,456 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-18_00-32-26.log]
[testng] 00:32:26,457 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66caacb8 - End of configuration.
[testng] [2024-03-18 00:32:26,516] [pool-1-thread-3] Initializing /data/samples/BigTIFFMotorola.tif:
[testng] 00:32:26,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 00:32:26,517 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:26,517 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-18_00-32-26.log]
[testng] 00:32:26,518 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4080f25e - End of configuration.
[testng] [2024-03-18 00:32:26,571] [pool-1-thread-2] Initializing /data/carlsen/Olympics8-lzw.tif:
[testng] 00:32:26,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 00:32:26,571 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 00:32:26,572 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-18_00-32-26.log]
[testng] 00:32:26,572 |-INFO in ch.qos.logback.core.sift.SiftProcessor@545c743c - End of configuration.
[testng] [2024-03-18 00:32:29,531] [pool-1-thread-9] Initializing /data/carlsen/Olympics8-raw.tif:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 689, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 31 seconds
Finished: SUCCESS