Started by upstream project "BIOFORMATS-test-repo" build number 47
originally caused by:
Started by upstream project "Trigger" build number 54
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@4
[BIOFORMATS-test-folder@4] $ /bin/bash -xe /tmp/jenkins9226013180690250169.sh
+ '[' leica-scn = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_6822_merge_ci -v /uod/idr/repos/curated/leica-scn:/data -v /uod/idr-scratch/merge-ci/curated/leica-scn:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:15:31,836 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:15:31,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:15:31,837 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:15:31,838 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:15:31,839 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:15:31,839 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:15:31,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:15:31,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:15:31,840 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:15:31,841 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:15:31,841 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:15:31,842 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:15:32,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:15:32,036 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:15:32,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:15:32,059 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:15:32,065 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:15:32,065 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:15:32,065 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:15:32,066 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:15:32,066 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:15:32,066 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:15:32,066 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 226 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-28 02:15:32,080] [main] java.version = 17.0.2
[testng] 02:15:32,084 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:15:32,085 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:32,133 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-28_02-15-32.log]
[testng] 02:15:32,134 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-04-28 02:15:32,136] [main] testng.directory = /data
[testng] [2024-04-28 02:15:32,136] [main] testng.configDirectory = /config
[testng] [2024-04-28 02:15:32,145] [main] testng.multiplier = 1.0
[testng] [2024-04-28 02:15:32,145] [main] testng.in-memory = false
[testng] [2024-04-28 02:15:32,146] [main] testng.allow-missing = false
[testng] [2024-04-28 02:15:32,146] [main] user.language = en
[testng] [2024-04-28 02:15:32,146] [main] user.country = ${user.country}
[testng] [2024-04-28 02:15:32,146] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-28 02:15:45,210] [main] ----------------------------------------
[testng] [2024-04-28 02:15:45,210] [main] Total files: 12
[testng] [2024-04-28 02:15:45,211] [main] Scan time: 13.064 s (1088 ms/file)
[testng] [2024-04-28 02:15:45,211] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 12 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-28 02:15:46,849] [pool-1-thread-1] Initializing /data/scott/ImageCollection_0000000418_2010-10-27 13_31_31Z.scn:
[testng] 02:15:46,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:15:46,850 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:46,851 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-28_02-15-46.log]
[testng] 02:15:46,851 |-INFO in ch.qos.logback.core.sift.SiftProcessor@124a0a9f - End of configuration.
[testng] [2024-04-28 02:15:46,937] [pool-1-thread-12] Initializing /data/qa-10469/Slide_907790L_DAPI_Ki67.scn:
[testng] 02:15:46,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:15:46,937 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:46,939 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-04-28_02-15-46.log]
[testng] 02:15:46,939 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b6eb06 - End of configuration.
[testng] [2024-04-28 02:15:47,095] [pool-1-thread-11] Initializing /data/mihaela/UCLAD_0000000280_2011-02-10 13_32_55Z.scn:
[testng] 02:15:47,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:15:47,095 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:47,096 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-28_02-15-47.log]
[testng] 02:15:47,096 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12b4a65b - End of configuration.
[testng] [2024-04-28 02:15:47,168] [pool-1-thread-10] Initializing /data/qa-17671/132223-12_022a1963-b32e-467f-8242-b51a5295951f.SCN:
[testng] 02:15:47,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:15:47,168 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:47,169 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-28_02-15-47.log]
[testng] 02:15:47,169 |-INFO in ch.qos.logback.core.sift.SiftProcessor@53d0d6b4 - End of configuration.
[testng] [2024-04-28 02:15:47,245] [pool-1-thread-9] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46 opened usig LOCI.tif:
[testng] 02:15:47,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:15:47,245 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:47,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-28_02-15-47.log]
[testng] 02:15:47,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7fc10941 - End of configuration.
[testng] [2024-04-28 02:15:47,294] [pool-1-thread-8] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46.scn:
[testng] 02:15:47,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:15:47,294 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:47,295 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-28_02-15-47.log]
[testng] 02:15:47,308 |-INFO in ch.qos.logback.core.sift.SiftProcessor@9510fe7 - End of configuration.
[testng] [2024-04-28 02:15:47,377] [pool-1-thread-7] Initializing /data/public/openslide/Leica-3/Leica-3.scn:
[testng] 02:15:47,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:15:47,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:47,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-28_02-15-47.log]
[testng] 02:15:47,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a939cda - End of configuration.
[testng] [2024-04-28 02:15:47,471] [pool-1-thread-6] Initializing /data/public/openslide/Leica-1/Leica-1.scn:
[testng] 02:15:47,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:15:47,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:47,473 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-28_02-15-47.log]
[testng] 02:15:47,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3be1c107 - End of configuration.
[testng] [2024-04-28 02:15:47,568] [pool-1-thread-5] Initializing /data/qa-11049/HP15.4994_2015-04-28.scn:
[testng] 02:15:47,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:15:47,569 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:47,569 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-28_02-15-47.log]
[testng] 02:15:47,570 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6278ac4 - End of configuration.
[testng] [2024-04-28 02:15:47,646] [pool-1-thread-4] Initializing /data/michael/collection_0000008286_2012-05-23 17_20_46 fullresolution.jpg:
[testng] 02:15:47,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:15:47,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:47,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-28_02-15-47.log]
[testng] 02:15:47,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2e04997b - End of configuration.
[testng] [2024-04-28 02:15:47,740] [pool-1-thread-3] Initializing /data/scott/Oral_Biology_13 (1).scn:
[testng] 02:15:47,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:15:47,740 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:47,741 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-28_02-15-47.log]
[testng] 02:15:47,742 |-INFO in ch.qos.logback.core.sift.SiftProcessor@466cf65b - End of configuration.
[testng] [2024-04-28 02:15:48,009] [pool-1-thread-2] Initializing /data/public/openslide/Leica-2/Leica-2.scn:
[testng] 02:15:48,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:15:48,010 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:15:48,011 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-28_02-15-48.log]
[testng] 02:15:48,011 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5a9a706d - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 636, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 1 minute 38 seconds
Finished: SUCCESS