Started by upstream project "BIOFORMATS-test-repo" build number 47
originally caused by:
Started by upstream project "Trigger" build number 54
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins2269514740953905229.sh
+ '[' nikon-jp2 = slidebook ']'
++ date +%u
+ '[' 7 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_6843_merge_ci -v /uod/idr/repos/curated/nikon-jp2:/data -v /uod/idr-scratch/merge-ci/curated/nikon-jp2:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
[javac] warning: [options] bootstrap class path not set in conjunction with -source 8
[javac] 1 warning
test-automated:
[testng] Could not load field socket from SocketImpl: java.lang.NoSuchFieldException: socket
[testng] Could not load field serverSocket from SocketImpl: java.lang.NoSuchFieldException: serverSocket
[testng] File leak detector installed
[testng] 02:38:10,254 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
[testng] 02:38:10,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - No custom configurators were discovered as a service.
[testng] 02:38:10,255 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:38:10,256 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
[testng] 02:38:10,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
[testng] 02:38:10,257 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
[testng] 02:38:10,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
[testng] 02:38:10,257 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:38:10,258 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
[testng] 02:38:10,258 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
[testng] 02:38:10,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
[testng] 02:38:10,259 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
[testng] 02:38:10,433 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:38:10,434 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:38:10,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:38:10,458 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:38:10,464 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:38:10,464 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:38:10,464 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:38:10,464 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:38:10,464 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@576d5deb - End of configuration.
[testng] 02:38:10,465 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6fdbe764 - Registering current configuration as safe fallback point
[testng] 02:38:10,465 |-INFO in ch.qos.logback.classic.util.ContextInitializer@d6e7bab - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 207 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-04-28 02:38:10,474] [main] java.version = 17.0.2
[testng] 02:38:10,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:38:10,478 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:10,519 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-04-28_02-38-10.log]
[testng] 02:38:10,521 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37313c65 - End of configuration.
[testng] [2024-04-28 02:38:10,523] [main] testng.directory = /data
[testng] [2024-04-28 02:38:10,523] [main] testng.configDirectory = /config
[testng] [2024-04-28 02:38:10,532] [main] testng.multiplier = 1.0
[testng] [2024-04-28 02:38:10,533] [main] testng.in-memory = false
[testng] [2024-04-28 02:38:10,533] [main] testng.allow-missing = false
[testng] [2024-04-28 02:38:10,533] [main] user.language = en
[testng] [2024-04-28 02:38:10,533] [main] user.country = ${user.country}
[testng] [2024-04-28 02:38:10,534] [main] Maximum heap size = 15360 MB
[testng] Scanning for files...
[testng] [2024-04-28 02:38:11,055] [main] ----------------------------------------
[testng] [2024-04-28 02:38:11,055] [main] Total files: 11
[testng] [2024-04-28 02:38:11,055] [main] Scan time: 0.521 s (47 ms/file)
[testng] [2024-04-28 02:38:11,055] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 11 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-04-28 02:38:13,525] [pool-1-thread-1] Initializing /data/kira/DapiFitcTexRed008B.tif:
[testng] 02:38:13,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:38:13,526 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:13,527 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-04-28_02-38-13.log]
[testng] 02:38:13,528 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6e9e3d15 - End of configuration.
[testng] [2024-04-28 02:38:13,610] [pool-1-thread-11] Initializing /data/kira/DapiFitcTexRed008.jp2:
[testng] 02:38:13,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:38:13,611 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:13,612 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-04-28_02-38-13.log]
[testng] 02:38:13,613 |-INFO in ch.qos.logback.core.sift.SiftProcessor@243451b3 - End of configuration.
[testng] [2024-04-28 02:38:13,772] [pool-1-thread-10] Initializing /data/kira/DapiFitcTexRed003.jpg:
[testng] 02:38:13,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:38:13,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:13,774 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-04-28_02-38-13.log]
[testng] 02:38:13,774 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11ee3b2 - End of configuration.
[testng] [2024-04-28 02:38:13,829] [pool-1-thread-9] Initializing /data/kira/DapiFitcTexRed006.png:
[testng] 02:38:13,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:38:13,829 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:13,830 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-04-28_02-38-13.log]
[testng] 02:38:13,830 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c50cd18 - End of configuration.
[testng] [2024-04-28 02:38:13,840] [pool-1-thread-8] Initializing /data/kira/DapiFitcTexRed004.tif:
[testng] 02:38:13,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:38:13,840 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:13,841 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-04-28_02-38-13.log]
[testng] 02:38:13,842 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1163c717 - End of configuration.
[testng] [2024-04-28 02:38:13,950] [pool-1-thread-7] Initializing /data/kira/DapiFitcTexRed008R.tif:
[testng] 02:38:13,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:38:13,950 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:13,951 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-04-28_02-38-13.log]
[testng] 02:38:13,951 |-INFO in ch.qos.logback.core.sift.SiftProcessor@336e1e6a - End of configuration.
[testng] [2024-04-28 02:38:14,045] [pool-1-thread-6] Initializing /data/kira/DapiFitcTexRed008BGR.tif:
[testng] 02:38:14,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:38:14,045 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:14,046 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-04-28_02-38-14.log]
[testng] 02:38:14,046 |-INFO in ch.qos.logback.core.sift.SiftProcessor@33626144 - End of configuration.
[testng] [2024-04-28 02:38:14,121] [pool-1-thread-5] Initializing /data/kira/DapiFitcTexRed007.gif:
[testng] 02:38:14,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:38:14,122 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:14,123 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-04-28_02-38-14.log]
[testng] 02:38:14,123 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5ab93932 - End of configuration.
[testng] [2024-04-28 02:38:14,161] [pool-1-thread-4] Initializing /data/kira/DapiFitcTexRed005.bmp:
[testng] 02:38:14,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:38:14,161 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:14,162 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-04-28_02-38-14.log]
[testng] 02:38:14,162 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7aeef088 - End of configuration.
[testng] [2024-04-28 02:38:14,173] [pool-1-thread-3] Initializing /data/kira/DapiFitcTexRed008G.tif:
[testng] 02:38:14,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:38:14,173 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:14,174 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-04-28_02-38-14.log]
[testng] 02:38:14,174 |-INFO in ch.qos.logback.core.sift.SiftProcessor@54c4b4ea - End of configuration.
[testng] [2024-04-28 02:38:14,246] [pool-1-thread-2] Initializing /data/kira/DapiFitcTexRed001.jp2:
[testng] 02:38:14,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:38:14,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:38:14,247 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-04-28_02-38-14.log]
[testng] 02:38:14,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1c63811e - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 583, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 19 seconds
Finished: SUCCESS