Started by upstream project "BIOFORMATS-test-repo" build number 5 originally caused by: Started by upstream project "Trigger" build number 6 originally caused by: Started by timer Running as SYSTEM Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder [BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins18347852930490235574.sh + '[' metamorph = slidebook ']' ++ date +%u + '[' 1 -le 1 ']' + DOCKER_ARGS='-Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR' + sudo docker run --rm --name BIOFORMATS-test-folder_711_merge_ci -v /uod/idr/repos/curated/metamorph:/data -v /uod/idr-scratch/merge-ci/curated/metamorph:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12 -Duser.language=fr -Duser.country=FR Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml [echo] isSnapshot = true init-title: [echo] ----------=========== bio-formats-testing-framework ===========---------- init-timestamp: init: copy-resources: compile: [resolver:resolve] Resolving artifacts compile-tests: [resolver:resolve] Resolving artifacts [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test test-automated: [testng] File leak detector installed [testng] 01:13:30,769 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14 [testng] 01:13:30,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - No custom configurators were discovered as a service. [testng] 01:13:30,771 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:13:30,772 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator [testng] 01:13:30,773 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo] [testng] 01:13:30,773 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo] [testng] 01:13:30,773 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 1 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY [testng] 01:13:30,773 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:13:30,774 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator [testng] 01:13:30,774 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}] [testng] 01:13:30,774 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml] [testng] 01:13:30,774 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml] [testng] 01:13:31,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout] [testng] 01:13:31,017 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender] [testng] 01:13:31,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT] [testng] 01:13:31,046 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender] [testng] 01:13:31,055 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG [testng] 01:13:31,055 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO [testng] 01:13:31,055 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT] [testng] 01:13:31,056 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng] [testng] 01:13:31,056 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@1ddf84b8 - End of configuration. [testng] 01:13:31,057 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@5e82df6a - Registering current configuration as safe fallback point [testng] 01:13:31,057 |-INFO in ch.qos.logback.classic.util.ContextInitializer@197d671 - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 283 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY [testng] [2024-03-18 01:13:31,070] [main] java.version = 1.8.0_342 [testng] 01:13:31,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main] [testng] 01:13:31,074 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:13:31,120 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-03-18_01-13-31.log] [testng] 01:13:31,122 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration. [testng] [2024-03-18 01:13:31,124] [main] testng.directory = /data [testng] [2024-03-18 01:13:31,124] [main] testng.configDirectory = /config [testng] [2024-03-18 01:13:31,137] [main] testng.multiplier = 1.0 [testng] [2024-03-18 01:13:31,137] [main] testng.in-memory = false [testng] [2024-03-18 01:13:31,137] [main] testng.allow-missing = false [testng] [2024-03-18 01:13:31,137] [main] user.language = fr [testng] [2024-03-18 01:13:31,137] [main] user.country = FR [testng] [2024-03-18 01:13:31,138] [main] Maximum heap size = 13653 MB [testng] Scanning for files... [testng] [2024-03-18 01:20:47,839] [main] ---------------------------------------- [testng] [2024-03-18 01:20:47,839] [main] Total files: 7329 [testng] [2024-03-18 01:20:47,839] [main] Scan time: 436.701 s (59 ms/file) [testng] [2024-03-18 01:20:47,839] [main] ---------------------------------------- [testng] Building list of tests... [testng] Ready to test 209 files [testng] [TestNG] Running: [testng] Bio-Formats software test suite [testng] [testng] [2024-03-18 01:26:39,111] [pool-1-thread-1] Initializing /data/chris/test2_w2_s1_t2.stk: [testng] 01:26:39,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1] [testng] 01:26:39,112 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:39,113 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-03-18_01-26-39.log] [testng] 01:26:39,113 |-INFO in ch.qos.logback.core.sift.SiftProcessor@599d684e - End of configuration. [testng] [2024-03-18 01:26:39,562] [pool-1-thread-12] Initializing /data/samples/zserEight.stk: [testng] 01:26:39,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12] [testng] 01:26:39,563 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:39,563 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-03-18_01-26-39.log] [testng] 01:26:39,564 |-INFO in ch.qos.logback.core.sift.SiftProcessor@49dacde2 - End of configuration. [testng] [2024-03-18 01:26:39,942] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w3Filter TRITC.jpg: [testng] 01:26:39,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11] [testng] 01:26:39,942 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:39,943 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-03-18_01-26-39.log] [testng] 01:26:39,943 |-INFO in ch.qos.logback.core.sift.SiftProcessor@42d42b99 - End of configuration. [testng] [2024-03-18 01:26:40,028] [pool-1-thread-10] Initializing /data/graham/G_Wright raw.stk: [testng] 01:26:40,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10] [testng] 01:26:40,029 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:40,029 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-03-18_01-26-40.log] [testng] 01:26:40,030 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b38a810 - End of configuration. [testng] [2024-03-18 01:26:40,451] [pool-1-thread-9] Initializing /data/mike/TEST 1_7_w2EN GFP_s1_t61.STK: [testng] 01:26:40,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9] [testng] 01:26:40,451 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:40,452 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-03-18_01-26-40.log] [testng] 01:26:40,452 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7961f271 - End of configuration. [testng] [2024-03-18 01:26:40,908] [pool-1-thread-8] Initializing /data/alex/13/LJN_Y1136_13_w2FITC_t2.STK: [testng] 01:26:40,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8] [testng] 01:26:40,908 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:40,909 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-03-18_01-26-40.log] [testng] 01:26:40,909 |-INFO in ch.qos.logback.core.sift.SiftProcessor@14eca8d9 - End of configuration. [testng] [2024-03-18 01:26:41,353] [pool-1-thread-7] Initializing /data/grant/XYZC_Image_w1FITC.STK: [testng] 01:26:41,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7] [testng] 01:26:41,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:41,353 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-03-18_01-26-41.log] [testng] 01:26:41,354 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5eef9e0 - End of configuration. [testng] [2024-03-18 01:26:41,772] [pool-1-thread-6] Initializing /data/aaron/L15_CTRL_FC1d_416_Da1.stk: [testng] 01:26:41,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6] [testng] 01:26:41,773 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:41,773 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-03-18_01-26-41.log] [testng] 01:26:41,773 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2fca2938 - End of configuration. [testng] [2024-03-18 01:26:42,246] [pool-1-thread-5] Initializing /data/andressa/RPE/Sparse/Serum/Color Combine.tif: [testng] 01:26:42,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5] [testng] 01:26:42,246 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:42,246 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-03-18_01-26-42.log] [testng] 01:26:42,247 |-INFO in ch.qos.logback.core.sift.SiftProcessor@571d676b - End of configuration. [testng] [2024-03-18 01:26:42,647] [pool-1-thread-4] Initializing /data/lee/20130116-u2os-celldensitytest-72h-96h_m08_s9_w2766e46f1-81be-45a2-88b1-abe8da58c47a.tif: [testng] 01:26:42,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4] [testng] 01:26:42,647 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:42,648 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-03-18_01-26-42.log] [testng] 01:26:42,648 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5e4165af - End of configuration. [testng] [2024-03-18 01:26:43,027] [pool-1-thread-3] Initializing /data/josh/2101to800.stk: [testng] 01:26:43,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3] [testng] 01:26:43,027 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:43,028 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-03-18_01-26-43.log] [testng] 01:26:43,028 |-INFO in ch.qos.logback.core.sift.SiftProcessor@639b19d - End of configuration. [testng] [2024-03-18 01:26:45,662] [pool-1-thread-2] Initializing /data/jacek/YFP2trans.tif: [testng] 01:26:45,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2] [testng] 01:26:45,663 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender] [testng] 01:26:45,663 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-03-18_01-26-45.log] [testng] 01:26:45,664 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66b638c8 - End of configuration. [testng] [2024-03-18 01:26:48,702] [pool-1-thread-11] Initializing /data/josh/EditedMovies/2101to600a.stk: [testng] [2024-03-18 01:26:56,024] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w1Filter DAPI.TIF: [testng] [2024-03-18 01:26:56,576] [pool-1-thread-1] Initializing /data/josh/2101to600astk.stk: [testng] [2024-03-18 01:27:12,699] [pool-1-thread-10] Initializing /data/qa-31304/Well _C6_1.tif: [testng] [2024-03-18 01:27:13,174] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w1Filter DAPI.TIF: [testng] [2024-03-18 01:27:13,575] [pool-1-thread-9] Initializing /data/ascb/mt racgap1 dna.tif: [testng] [2024-03-18 01:27:13,955] [pool-1-thread-4] Initializing /data/ved/Expt01_w1CFP FRET-S ND0.5_t1.TIF: [testng] [2024-03-18 01:27:14,424] [pool-1-thread-2] Initializing /data/lee/397_w1447 laser_s17_t1_bad.TIF: [testng] [2024-03-18 01:27:14,921] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Sparse/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-18 01:27:18,587] [pool-1-thread-12] Initializing /data/tristan/data IJM/mw3/MDA_MW3(GFP-RFP-GLP)_w1GFP.TIF: [testng] [2024-03-18 01:27:19,147] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-3.tif: [testng] [2024-03-18 01:27:19,660] [pool-1-thread-6] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s4t41_w1Laser4054BD4BP_s1_t1.stk: [testng] [2024-03-18 01:27:20,491] [pool-1-thread-2] Initializing /data/alex/15/LJN_Y1136_15_w2DAPI_t2.STK: [testng] [2024-03-18 01:27:20,903] [pool-1-thread-10] Initializing /data/hms/HCT116_w1Phase FITC_s7_t1.TIF: [testng] [2024-03-18 01:27:22,469] [pool-1-thread-8] Initializing /data/lee/IXMtest_P24_s9_w560D948A4-4D16-49D0-9080-7575267498F9.tif: [testng] [2024-03-18 01:27:22,951] [pool-1-thread-7] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t41_w1Laser4054BD4BP_t1.stk: [testng] [2024-03-18 01:27:25,883] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine-2.tif: [testng] [2024-03-18 01:27:26,431] [pool-1-thread-9] Initializing /data/samples/single-series-test/test_w1.TIF: [testng] [2024-03-18 01:27:28,285] [pool-1-thread-3] Initializing /data/grant/XYZCT_Image_w1FITC_t1.STK: [testng] [2024-03-18 01:27:29,744] [pool-1-thread-5] Initializing /data/steve/Experiment2.stk: [testng] [2024-03-18 01:27:31,459] [pool-1-thread-8] Initializing /data/chris/exp1_w1CSU GREEN_s3_t001.stk: [testng] [2024-03-18 01:27:32,466] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t2.TIF: [testng] [2024-03-18 01:27:33,200] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-18 01:27:33,948] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-4.tif: [testng] [2024-03-18 01:27:34,537] [pool-1-thread-2] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-18 01:27:35,072] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-18 01:27:35,073] [pool-1-thread-5] Initializing /data/cumol-test-series/23.001: [testng] [2024-03-18 01:27:35,744] [pool-1-thread-4] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c1s1t1.tif: [testng] [2024-03-18 01:27:37,473] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-18 01:27:39,850] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t2.TIF: [testng] [2024-03-18 01:27:40,537] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-18 01:27:40,981] [pool-1-thread-4] Initializing /data/thomas/test.tif: [testng] [2024-03-18 01:27:41,713] [pool-1-thread-7] Initializing /data/graham/G_Wright deconvolved.stk: [testng] [2024-03-18 01:27:43,541] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t2.TIF: [testng] [2024-03-18 01:27:44,351] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-18 01:27:45,301] [pool-1-thread-3] Initializing /data/qa-16915/m-04.tif: [testng] [2024-03-18 01:27:46,405] [pool-1-thread-7] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment3_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-18 01:27:47,028] [pool-1-thread-4] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-18 01:27:48,664] [pool-1-thread-10] Initializing /data/imagesc-39526/bottom/956662_PVTom_L7day_4x_z10um_bottom_Region-1_nTiles-029_1_conf561_s1.stk: [testng] [2024-03-18 01:27:50,620] [pool-1-thread-8] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-18 01:27:51,162] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-18 01:27:52,409] [pool-1-thread-3] Initializing /data/josh/2101to400astk.stk: [testng] [2024-03-18 01:27:57,434] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t2.TIF: [testng] [2024-03-18 01:27:58,012] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-18 01:27:58,966] [pool-1-thread-7] Initializing /data/ascb/mt aim.tif: [testng] [2024-03-18 01:27:59,918] [pool-1-thread-5] Initializing /data/ascb/mt mklp1.tif: [testng] [2024-03-18 01:28:01,061] [pool-1-thread-12] Initializing /data/qa-16915/m-02.tif: [testng] [2024-03-18 01:28:02,120] [pool-1-thread-4] Initializing /data/samples/zserSixteen.stk: [testng] [2024-03-18 01:28:02,874] [pool-1-thread-8] Initializing /data/chris-de-graffenried/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-18 01:28:03,946] [pool-1-thread-7] Initializing /data/sebastien-besson/002/120119_VimMito_002_w1DIC_t1.TIF: [testng] [2024-03-18 01:28:08,801] [pool-1-thread-5] Initializing /data/josh/2101to600f.stk: [testng] [2024-03-18 01:28:15,862] [pool-1-thread-4] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-18 01:28:17,389] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge.TIF: [testng] [2024-03-18 01:28:18,352] [pool-1-thread-12] Initializing /data/jcb/201008090/Color Combine.stk: [testng] [2024-03-18 01:28:19,483] [pool-1-thread-2] Initializing /data/qa-17827/G28P2E10-2 x5.TIF: [testng] [2024-03-18 01:28:22,446] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-18 01:28:23,005] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Chh488.stk: [testng] [2024-03-18 01:28:24,909] [pool-1-thread-12] Initializing /data/josh/EditedMovies/2101to600b.stk: [testng] [2024-03-18 01:28:28,094] [pool-1-thread-2] Initializing /data/dave/Z Series.stk: [testng] [2024-03-18 01:28:28,948] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-18 01:28:31,065] [pool-1-thread-6] Initializing /data/benedikt/LosslessCompressedSTK.stk: [testng] [2024-03-18 01:28:33,031] [pool-1-thread-8] Initializing /data/jayne/2celltest10fpstl65power.stk: [testng] [2024-03-18 01:28:34,124] [pool-1-thread-4] Initializing /data/alex/48h/48h_siGW25_w2FITC.TIF: [testng] [2024-03-18 01:28:34,554] [pool-1-thread-11] Initializing /data/jmuhlich/rgb_w1_s1_t1.TIF: [testng] [2024-03-18 01:28:34,970] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/Color Combine.tif: [testng] [2024-03-18 01:28:36,815] [pool-1-thread-9] Initializing /data/stephane/Lame7-E5-Y+-001.stk: [testng] [2024-03-18 01:28:38,417] [pool-1-thread-8] Initializing /data/andressa/RPE/Full Confluency/Fibronectin/Color Combine.tif: [testng] [2024-03-18 01:28:38,858] [pool-1-thread-2] Initializing 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WTChlor.2_w20 Brightfield_s4.TIF: [testng] [2024-03-18 01:28:50,651] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t12_w2Laser4914BD4BP_OverView.tif: [testng] [2024-03-18 01:28:51,039] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-18 01:28:51,286] [pool-1-thread-3] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-18 01:28:52,391] [pool-1-thread-9] Initializing /data/andressa/RPE/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-18 01:28:54,293] [pool-1-thread-2] Initializing /data/chris-de-graffenried/2011-05-30/ND C4 488 PLK 5682_w1sRFP.stk: [testng] [2024-03-18 01:28:56,379] [pool-1-thread-8] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s2_t1.TIF: [testng] [2024-03-18 01:28:57,151] [pool-1-thread-8] Used files list does not include base file [testng] [2024-03-18 01:28:57,475] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/Color Combine-5.tif: [testng] [2024-03-18 01:28:58,204] [pool-1-thread-12] Initializing /data/chris/exp1_w2CSU RED_s3_t002.stk: [testng] [2024-03-18 01:29:01,995] [pool-1-thread-12] Initializing /data/qa-16907/1_w1Single SPI 405.TIF: [testng] [2024-03-18 01:29:03,221] [pool-1-thread-10] Initializing /data/qa-16915/m-02-488.ome.tif: [testng] [2024-03-18 01:29:04,546] [pool-1-thread-3] Initializing /data/imagesc-39526/20200622_GDF9_D21_MT Ovary_1/MT_Ovary-11_w1conf640_s1.stk: [testng] [2024-03-18 01:29:06,949] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to400b.stk: [testng] [2024-03-18 01:29:13,274] [pool-1-thread-5] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-18 01:29:13,896] [pool-1-thread-1] Initializing /data/josh/2101to600e.stk: [testng] [2024-03-18 01:29:16,162] [pool-1-thread-2] Initializing /data/samples/zseries.stk: [testng] [2024-03-18 01:29:16,580] [pool-1-thread-10] Initializing /data/grant/X.STK: [testng] [2024-03-18 01:29:18,412] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw1/MDA_mw1(GFP)_w1GFP.TIF: [testng] [2024-03-18 01:29:19,471] [pool-1-thread-2] Initializing /data/sebastien-besson/new/120711_D2_001/120711_D2_001_w1DUAL 491-561_t1.TIF: [testng] [2024-03-18 01:29:20,665] [pool-1-thread-12] Initializing /data/tristan/data IJM/tl/MDA_TL_t1.TIF: [testng] [2024-03-18 01:29:23,353] [pool-1-thread-10] Initializing /data/samples/10xcalib.tif: [testng] [2024-03-18 01:29:25,183] [pool-1-thread-11] Initializing /data/qa-16915/m-02-561.ome.tif: [testng] [2024-03-18 01:29:26,802] [pool-1-thread-5] Initializing /data/chris/exp1_w1_s1_t1.tif: [testng] [2024-03-18 01:29:27,712] [pool-1-thread-10] Initializing /data/samples/diatoms3d.stk: [testng] [2024-03-18 01:29:29,675] [pool-1-thread-11] Initializing /data/david/tl4.tif: [testng] [2024-03-18 01:29:30,336] [pool-1-thread-8] Initializing /data/qa-16915/m-04-561.tif: [testng] [2024-03-18 01:29:31,232] [pool-1-thread-3] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w2Filter FITC.TIF: [testng] [2024-03-18 01:29:31,701] [pool-1-thread-5] Initializing /data/qa-16915/m-01.tif: [testng] [2024-03-18 01:29:32,978] [pool-1-thread-10] Initializing /data/alex/Selected FITC.stk: [testng] [2024-03-18 01:29:33,340] [pool-1-thread-12] Initializing /data/jcb/201008090/3T3_ShhN_C_DIC.stk: [testng] [2024-03-18 01:29:34,040] [pool-1-thread-1] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w3Filter TRITC.TIF: [testng] [2024-03-18 01:29:35,162] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw1_z/MDA_z_MW1(GFP)_w1GFP.TIF: [testng] [2024-03-18 01:29:37,181] [pool-1-thread-3] Initializing /data/andressa/RPE/Sparse/Serum/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-18 01:29:37,956] [pool-1-thread-8] Initializing /data/josh/EKM49/EKM49_w2568 -TRITC-_t1.TIF: [testng] [2024-03-18 01:29:39,120] [pool-1-thread-10] Initializing /data/josh/EditedMovies/2101to600e.stk: [testng] [2024-03-18 01:29:40,699] [pool-1-thread-1] Initializing /data/andressa/RPE/Full Confluency/Serum/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-18 01:29:41,257] [pool-1-thread-6] Initializing /data/ascb/golgi marker.tif: [testng] [2024-03-18 01:29:41,669] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w2Filter FITC.TIF: [testng] [2024-03-18 01:29:42,499] [pool-1-thread-5] Initializing /data/tristan/data IJM/tl_ z/MDA_TL_z_t1.TIF: [testng] [2024-03-18 01:29:42,902] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 3.tif: [testng] [2024-03-18 01:29:43,809] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t1.TIF: [testng] [2024-03-18 01:29:44,427] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-18 01:29:46,126] [pool-1-thread-6] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w3Filter TRITC.TIF: [testng] [2024-03-18 01:29:46,743] [pool-1-thread-12] Initializing /data/dan/CavAlpha1D_51490_engG4_F_101111_1.tif: [testng] [2024-03-18 01:29:47,641] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Serum/Color Combine.tif: [testng] [2024-03-18 01:29:48,572] [pool-1-thread-3] Initializing /data/gh-2613/ScanSlide_exp1_rep0_w1confGFP_s1.tif: [testng] [2024-03-18 01:29:51,194] [pool-1-thread-6] Initializing /data/aaron/metamorph.stk: [testng] [2024-03-18 01:29:51,591] [pool-1-thread-1] Initializing /data/sebastien-besson/new/D2Test/120711/120711_D2Test_001_w1DUAL 491-561.TIF: [testng] [2024-03-18 01:29:51,959] [pool-1-thread-11] Initializing /data/qa-16915/m-04-488.tif: [testng] [2024-03-18 01:29:53,019] [pool-1-thread-5] Initializing /data/ascb/golgi marker 2.tif: [testng] [2024-03-18 01:29:53,884] [pool-1-thread-12] Initializing /data/jmuhlich/metamorph_scan_rgb/Scan 20x obj 40_w1_s1_t1.TIF: [testng] [2024-03-18 01:29:54,561] [pool-1-thread-3] Initializing 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/data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s2_t1.TIF: [testng] [2024-03-18 01:30:39,142] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-18 01:30:39,160] [pool-1-thread-5] Initializing /data/olivier/01/CDYL_D0_frap_100x_01_w1491-DOUBLE-GFP-DsRed_t1.TIF: [testng] [2024-03-18 01:30:44,056] [pool-1-thread-1] Initializing /data/josh/EditedMovies/2101to400a.stk: [testng] [2024-03-18 01:30:47,018] [pool-1-thread-9] Initializing /data/sebastien-besson/new/D2Test/120711/Experiment4_w1CFP-YFP FRET 446.TIF: [testng] [2024-03-18 01:30:48,761] [pool-1-thread-2] Initializing /data/tristan/data IJM/mw3_z/MDA_z_MW3(GFP_RFP_GLP)_w3GLP.TIF: [testng] [2024-03-18 01:30:50,522] [pool-1-thread-12] Initializing /data/qa-16915/m-01-488.ome.tif: [testng] [2024-03-18 01:30:54,576] [pool-1-thread-12] Initializing /data/chris/exp1_w1CSU GREEN_s3_t002.stk: [testng] [2024-03-18 01:30:55,534] [pool-1-thread-9] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_3_w3Filter TRITC.TIF: [testng] [2024-03-18 01:30:57,416] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Sparse/Collagen/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-18 01:30:58,287] [pool-1-thread-12] Initializing /data/doil/001-23 dapi.stk: [testng] [2024-03-18 01:31:03,744] [pool-1-thread-9] Initializing /data/andressa/RPE/Full Confluency/Collagen/120806_2_w1Filter DAPI.TIF: [testng] [2024-03-18 01:31:06,333] [pool-1-thread-11] Initializing /data/josh/2101to600b.stk: [testng] [2024-03-18 01:31:10,192] [pool-1-thread-1] Initializing /data/imagesc-wafle-2020-08-18/2020-07-31 BB3084 MT3 DAY 4 reactivation/BB3084 in MT3_1_w1SDC488_s1_t1.stk: [testng] [2024-03-18 01:31:16,566] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.jpg: [testng] [2024-03-18 01:31:18,585] [pool-1-thread-8] Initializing /data/ascb/mt prc1 kif4 1.tif: [testng] [2024-03-18 01:31:19,545] [pool-1-thread-2] Initializing /data/andressa/RPE/Sparse/Fibronectin/Color Combine.tif: [testng] [2024-03-18 01:31:21,050] [pool-1-thread-9] Initializing /data/sebastien-besson/plk1/plk1_561nm_eb3_3_t1.TIF: [testng] [2024-03-18 01:31:21,898] [pool-1-thread-8] Initializing /data/jcb/201008090/3T3_ShhN_C_Nhh594.stk: [testng] [2024-03-18 01:31:23,398] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s1_t1.TIF: [testng] [2024-03-18 01:31:23,869] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-18 01:31:25,243] [pool-1-thread-8] Initializing /data/andressa/MCF-10A/Sparse/Collagen/Color Combine.tif: [testng] [2024-03-18 01:31:26,191] [pool-1-thread-9] Initializing /data/josh/EditedMovies/2101to800.stk: [testng] [2024-03-18 01:31:28,586] [pool-1-thread-3] Initializing /data/chris-de-graffenried/2011-11-01/DOX FAZ1 568 PLK 4881_w1Cy3.stk: [testng] [2024-03-18 01:31:31,164] [pool-1-thread-8] Initializing /data/gh-2613/ScanSlide_exp1_rep1_w1confGFP_s1.stk: [testng] [2024-03-18 01:31:36,457] [pool-1-thread-3] Initializing /data/sebastien-besson/new/04/04_w1Both lasers_t1.TIF: [testng] [2024-03-18 01:31:40,442] [pool-1-thread-11] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z1c2s4t11_w1Laser4054BD4BP_OverView.tif: [testng] [2024-03-18 01:31:40,779] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-18 01:31:41,455] [pool-1-thread-9] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w3DIC Confocal_s2_t1.TIF: [testng] [2024-03-18 01:31:41,972] [pool-1-thread-9] Used files list does not include base file [testng] [2024-03-18 01:31:44,405] [pool-1-thread-2] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t2.TIF: [testng] [2024-03-18 01:31:44,969] [pool-1-thread-2] Used files list does not include base file [testng] [2024-03-18 01:31:45,676] [pool-1-thread-11] Initializing /data/ascb/C9 Stack.tif: [testng] [2024-03-18 01:31:48,466] [pool-1-thread-8] Initializing /data/alex/14/LJN_Y1136_14_w2FITC_t2.STK: [testng] [2024-03-18 01:31:51,331] [pool-1-thread-11] Initializing /data/chris/test2_w2_s1_t1.stk: [testng] [2024-03-18 01:31:53,838] [pool-1-thread-11] Initializing /data/tristan/data IJM/mw2/MDA_mw2(GFP-RFP)_w1GFP.TIF: [testng] [2024-03-18 01:31:57,177] [pool-1-thread-8] Initializing /data/chris/Stream-2(partial).stk: [testng] [2024-03-18 01:32:03,778] [pool-1-thread-6] Initializing /data/andressa/RPE/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-18 01:32:06,690] [pool-1-thread-11] Initializing /data/heiko/sample_2x2.stk: [testng] [2024-03-18 01:32:08,607] [pool-1-thread-6] Initializing /data/ascb/monopolar mt aim.tif: [testng] [2024-03-18 01:32:09,835] [pool-1-thread-9] Initializing /data/sebastien/GA-2222 raf-1_w2Mono 475 nm.STK: [testng] [2024-03-18 01:32:11,674] [pool-1-thread-11] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w2561-620-60-TR_s1_t1.TIF: [testng] [2024-03-18 01:32:12,323] [pool-1-thread-11] Used files list does not include base file [testng] [2024-03-18 01:32:13,070] [pool-1-thread-12] Initializing /data/ascb/RNA dye MT.tif: [testng] [2024-03-18 01:32:13,659] [pool-1-thread-6] Initializing /data/jcb/201007118/si133_J3_5_w18- 30- GFP_t1.STK: [testng] [2024-03-18 01:32:18,084] [pool-1-thread-8] Initializing /data/samples/test-plate/test_s10_t1.tif: [testng] [2024-03-18 01:32:26,406] [pool-1-thread-9] Initializing /data/ascb/C1 Stack.stk: [testng] [2024-03-18 01:32:27,031] [pool-1-thread-2] Initializing /data/heiko/metadata_3x3.jpg: [testng] [2024-03-18 01:32:29,109] [pool-1-thread-2] Initializing /data/jerome/deconv.STK: [testng] [2024-03-18 01:32:30,946] [pool-1-thread-12] Initializing /data/andressa/RPE/Full Confluency/Collagen/Color Combine 2.tif: [testng] [2024-03-18 01:32:33,619] [pool-1-thread-9] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c2s1t11_w1Laser4054BD4BP.stk: [testng] [2024-03-18 01:32:34,751] [pool-1-thread-2] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w2Filter FITC.TIF: [testng] [2024-03-18 01:32:36,674] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Collagen/120806_Confluent_Col_MCF10A_2_Merge_contrast.tif: [testng] [2024-03-18 01:32:39,765] [pool-1-thread-2] Initializing /data/jae/RGB_s34.tif: [testng] [2024-03-18 01:32:42,162] [pool-1-thread-9] Initializing /data/bill/OX218B3/OX218B3_w1488nm- 30-_t1.STK: [testng] [2024-03-18 01:32:45,415] [pool-1-thread-12] Initializing /data/mat/MM_NDSTACK/TEST6_thumb_w1491-525-50-FITC_s1_t2.TIF: [testng] [2024-03-18 01:32:46,396] [pool-1-thread-12] Used files list does not include base file [testng] [2024-03-18 01:32:46,418] [pool-1-thread-11] Initializing /data/strand/TS_200nm_3_w2Fluo GFP -100-.TIF: [testng] [2024-03-18 01:32:48,681] [pool-1-thread-2] Initializing /data/steve/Experiment2.tif: [testng] [2024-03-18 01:32:52,731] [pool-1-thread-2] Initializing /data/grant/Scale_bar_100um_XY_image.TIF: [testng] [2024-03-18 01:32:55,065] [pool-1-thread-11] Initializing /data/andressa/RPE/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-18 01:32:58,933] [pool-1-thread-7] Initializing /data/qa-16915/m-01-561.ome.tif: [testng] [2024-03-18 01:33:01,483] [pool-1-thread-2] Initializing /data/bill/FromBillM_New_MM_MDAdata/RWeD62u7dF1Mom1_w1CelegansDIC 100x_t1.TIF: [testng] [2024-03-18 01:33:10,649] [pool-1-thread-7] Initializing /data/josh/EditedMovies/2101to600f.stk: [testng] [2024-03-18 01:33:16,676] [pool-1-thread-11] Initializing /data/aaron/RR11_2 TRAINED mid lobIX 63X GFP568_s1.STK: [testng] [2024-03-18 01:33:20,685] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Sparse/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-18 01:33:22,150] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_1_w1Filter DAPI.TIF: [testng] [2024-03-18 01:33:26,351] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Serum/Color Combine.tif: [testng] [2024-03-18 01:33:30,986] [pool-1-thread-12] Initializing /data/fabrice/100722ac-2_w1RED_s1_t1.TIF: [testng] [2024-03-18 01:33:32,295] [pool-1-thread-11] Initializing /data/sebastian/CLC2_GFP root4/0.1% DMSO root4001.tif: [testng] [2024-03-18 01:33:34,950] [pool-1-thread-12] Initializing /data/thomas/t_test2001.tif: [testng] [2024-03-18 01:33:36,806] [pool-1-thread-11] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_4_w3Filter TRITC.TIF: [testng] [2024-03-18 01:33:39,309] [pool-1-thread-12] Initializing /data/andressa/MCF-10A/Full Confluency/Fibronectin/120806_2_w2Filter FITC.TIF: [testng] [2024-03-18 01:33:40,087] [pool-1-thread-7] Initializing /data/chris/exp1_w2CSU RED_s3_t001.stk: [testng] [2024-03-18 01:33:42,998] [pool-1-thread-11] Initializing /data/ascb/mt prc1 kif4 2.tif: [testng] [2024-03-18 01:33:43,443] [pool-1-thread-2] Initializing /data/ascb/mt prc1 kif4.tif: [testng] [2024-03-18 01:33:44,564] [pool-1-thread-7] Initializing /data/pang/z-stack/Z Series.tif: [testng] [2024-03-18 01:33:45,369] [pool-1-thread-12] Initializing /data/jan-eglinger/benchmark_v1_2018_x64y64z5c1s1t11_Laser4054BD4BP.stk: [testng] [2024-03-18 01:33:46,132] [pool-1-thread-12] Used files list does not include base file [testng] [testng] =============================================== [testng] Bio-Formats software test suite [testng] Total tests run: 11077, Failures: 0, Skips: 0 [testng] =============================================== [testng] BUILD SUCCESSFUL Total time: 67 minutes 7 seconds Finished: SUCCESS