Started by upstream project "BIOFORMATS-test-repo" build number 52
originally caused by:
Started by upstream project "Trigger" build number 59
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder
[BIOFORMATS-test-folder] $ /bin/bash -xe /tmp/jenkins3441348656403406253.sh
+ '[' mias = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_7677_merge_ci -v /uod/idr/repos/curated/mias:/data -v /uod/idr-scratch/merge-ci/curated/mias:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 03:00:15,700 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 03:00:15,748 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 03:00:15,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 03:00:15,779 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 03:00:15,789 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 03:00:15,789 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 03:00:15,789 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 03:00:15,789 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 03:00:15,789 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 03:00:15,790 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 03:00:15,790 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 500 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-03 03:00:15,820] [main] java.version = 1.8.0_342
[testng] 03:00:15,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 03:00:15,828 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:00:15,877 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-03_03-00-15.log]
[testng] 03:00:15,879 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-03 03:00:15,881] [main] testng.directory = /data
[testng] [2024-05-03 03:00:15,882] [main] testng.configDirectory = /config
[testng] [2024-05-03 03:00:15,894] [main] testng.multiplier = 1.0
[testng] [2024-05-03 03:00:15,895] [main] testng.in-memory = false
[testng] [2024-05-03 03:00:15,895] [main] testng.allow-missing = false
[testng] [2024-05-03 03:00:15,895] [main] user.language = en
[testng] [2024-05-03 03:00:15,895] [main] user.country = ${user.country}
[testng] [2024-05-03 03:00:15,895] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-03 03:00:26,642] [main] ----------------------------------------
[testng] [2024-05-03 03:00:26,642] [main] Total files: 12
[testng] [2024-05-03 03:00:26,643] [main] Scan time: 10.747 s (895 ms/file)
[testng] [2024-05-03 03:00:26,643] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 7 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-03 03:01:02,347] [pool-1-thread-1] Initializing /data/frans/NEO-Exp13072008-long-protokol/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif:
[testng] 03:01:02,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 03:01:02,348 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:01:02,349 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-03_03-01-02.log]
[testng] 03:01:02,350 |-INFO in ch.qos.logback.core.sift.SiftProcessor@655712ec - End of configuration.
[testng] [2024-05-03 03:01:02,883] [pool-1-thread-7] Initializing /data/frans/NEO-Exp13072008-long-protokol/004-365700055549/Well0001/mode1_z000_t000_im1_1.tif:
[testng] 03:01:02,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 03:01:02,884 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:01:02,885 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-03_03-01-02.log]
[testng] 03:01:02,886 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6c1c624a - End of configuration.
[testng] [2024-05-03 03:01:03,471] [pool-1-thread-6] Initializing /data/frans/One MNU Plate/001/Well0014/mode1_z000_t000_im1_1.tif:
[testng] 03:01:03,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 03:01:03,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:01:03,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-03_03-01-03.log]
[testng] 03:01:03,473 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3a6ddfa3 - End of configuration.
[testng] [2024-05-03 03:01:03,576] [pool-1-thread-5] Initializing /data/frans/MIAS 3 D set 2 july 13 2009/001/0018/1/001_001_000_000.tif:
[testng] 03:01:03,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 03:01:03,576 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:01:03,577 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-03_03-01-03.log]
[testng] 03:01:03,577 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5f2e4797 - End of configuration.
[testng] [2024-05-03 03:01:03,655] [pool-1-thread-4] Initializing /data/frans/siRNA_PRIM1_03102008/001-365700055641/Well0001/mode1_z000_t000_im1_1.tif:
[testng] 03:01:03,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 03:01:03,655 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:01:03,656 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-03_03-01-03.log]
[testng] 03:01:03,656 |-INFO in ch.qos.logback.core.sift.SiftProcessor@214593ca - End of configuration.
[testng] [2024-05-03 03:01:04,315] [pool-1-thread-3] Initializing /data/frans/MIAS 3D set 3 july 13 2009/001/0074/1/001_001_000_000.tif:
[testng] 03:01:04,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 03:01:04,316 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:01:04,316 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-03_03-01-04.log]
[testng] 03:01:04,317 |-INFO in ch.qos.logback.core.sift.SiftProcessor@79b07596 - End of configuration.
[testng] [2024-05-03 03:01:04,377] [pool-1-thread-2] Initializing /data/frans/NEO-Exp13072008-long-protokol/005-365700055480/Well0001/mode1_z000_t000_im1_1.tif:
[testng] 03:01:04,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 03:01:04,377 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 03:01:04,381 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-03_03-01-04.log]
[testng] 03:01:04,382 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec28a6d - End of configuration.
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 371, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 14 minutes 55 seconds
Finished: SUCCESS