Started by upstream project "BIOFORMATS-test-repo" build number 53
originally caused by:
 Started by upstream project "Trigger" build number 60
 originally caused by:
  Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@7
[BIOFORMATS-test-folder@7] $ /bin/bash -xe /tmp/jenkins6910876274919785854.sh
+ '[' scanr = slidebook ']'
++ date +%u
+ '[' 6 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_7807_merge_ci -v /uod/idr/repos/curated/scanr:/data -v /uod/idr-scratch/merge-ci/curated/scanr:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
     [echo] isSnapshot = true

init-title:
     [echo] ----------=========== bio-formats-testing-framework ===========----------

init-timestamp:

init:

copy-resources:

compile:
[resolver:resolve] Resolving artifacts

compile-tests:
[resolver:resolve] Resolving artifacts
    [javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
    [javac] warning: [options] bootstrap class path not set in conjunction with -source 8
    [javac] 1 warning

test-automated:
   [testng] WARNING: An illegal reflective access operation has occurred
   [testng] WARNING: Illegal reflective access by org.kohsuke.file_leak_detector.Listener (file:/home/build/.m2/repository/org/kohsuke/file-leak-detector/1.18/file-leak-detector-1.18-jar-with-dependencies.jar) to field java.net.SocketImpl.socket
   [testng] WARNING: Please consider reporting this to the maintainers of org.kohsuke.file_leak_detector.Listener
   [testng] WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
   [testng] WARNING: All illegal access operations will be denied in a future release
   [testng] File leak detector installed
   [testng] 02:23:22,753 |-INFO in ch.qos.logback.classic.LoggerContext[default] - This is logback-classic version 1.3.14
   [testng] 02:23:22,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - No custom configurators were discovered as a service.
   [testng] 02:23:22,755 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:23:22,756 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.joran.SerializedModelConfigurator
   [testng] 02:23:22,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.scmo]
   [testng] 02:23:22,757 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback.scmo]
   [testng] 02:23:22,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.joran.SerializedModelConfigurator.configure() call lasted 2 milliseconds. ExecutionStatus=INVOKE_NEXT_IF_ANY
   [testng] 02:23:22,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Trying to configure with ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:23:22,758 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - Constructed configurator of type class ch.qos.logback.classic.util.DefaultJoranConfigurator
   [testng] 02:23:22,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [${logback.configurationFile}]
   [testng] 02:23:22,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Could NOT find resource [logback-test.xml]
   [testng] 02:23:22,759 |-INFO in ch.qos.logback.classic.LoggerContext[default] - Found resource [logback.xml] at [file:/bio-formats-build/bioformats/components/test-suite/logback.xml]
   [testng] 02:23:22,952 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
   [testng] 02:23:22,953 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
   [testng] 02:23:22,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
   [testng] 02:23:22,980 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
   [testng] 02:23:22,986 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
   [testng] 02:23:22,986 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
   [testng] 02:23:22,986 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
   [testng] 02:23:22,987 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
   [testng] 02:23:22,987 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@2794eab6 - End of configuration.
   [testng] 02:23:22,988 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@6c1a5b54 - Registering current configuration as safe fallback point
   [testng] 02:23:22,988 |-INFO in ch.qos.logback.classic.util.ContextInitializer@3a6bb9bf - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 230 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
   [testng] [2024-05-04 02:23:22,997] [main] java.version = 11.0.16
   [testng] 02:23:23,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
   [testng] 02:23:23,001 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:23:23,050 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-04_02-23-23.log]
   [testng] 02:23:23,052 |-INFO in ch.qos.logback.core.sift.SiftProcessor@642a7222 - End of configuration.
   [testng] [2024-05-04 02:23:23,054] [main] testng.directory = /data
   [testng] [2024-05-04 02:23:23,055] [main] testng.configDirectory = /config
   [testng] [2024-05-04 02:23:23,065] [main] testng.multiplier = 1.0
   [testng] [2024-05-04 02:23:23,067] [main] testng.in-memory = false
   [testng] [2024-05-04 02:23:23,067] [main] testng.allow-missing = false
   [testng] [2024-05-04 02:23:23,067] [main] user.language = en
   [testng] [2024-05-04 02:23:23,067] [main] user.country = ${user.country}
   [testng] [2024-05-04 02:23:23,067] [main] Maximum heap size = 15360 MB
   [testng] Scanning for files...
   [testng] [2024-05-04 02:28:26,026] [main] ----------------------------------------
   [testng] [2024-05-04 02:28:26,026] [main] Total files: 2169
   [testng] [2024-05-04 02:28:26,026] [main] Scan time: 302.959 s (139 ms/file)
   [testng] [2024-05-04 02:28:26,027] [main] ----------------------------------------
   [testng] Building list of tests...
   [testng] Ready to test 17 files
   [testng] [TestNG] Running:
   [testng]   Bio-Formats software test suite
   [testng] 
   [testng] [2024-05-04 02:46:49,996] [pool-1-thread-1] Initializing /data/gideon/experiment_descriptor.xml: 
   [testng] 02:46:49,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
   [testng] 02:46:49,997 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:46:49,999 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-04_02-46-49.log]
   [testng] 02:46:50,000 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4da7e242 - End of configuration.
   [testng] [2024-05-04 02:47:24,078] [pool-1-thread-12] Initializing /data/christian/example/experiment_descriptor.xml: 
   [testng] 02:47:24,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
   [testng] 02:47:24,079 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:24,080 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-04_02-47-24.log]
   [testng] 02:47:24,081 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64603d86 - End of configuration.
   [testng] [2024-05-04 02:47:24,227] [pool-1-thread-11] Initializing /data/public/idr0009/0307-10--2007-05-30/experiment_descriptor.xml: 
   [testng] 02:47:24,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
   [testng] 02:47:24,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:47:24,228 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-04_02-47-24.log]
   [testng] 02:47:24,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@11654eb0 - End of configuration.
   [testng] [2024-05-04 02:48:33,816] [pool-1-thread-10] Initializing /data/ruben/280809_8wellLT_008/experiment_descriptor.xml: 
   [testng] 02:48:33,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
   [testng] 02:48:33,816 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:48:33,818 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-04_02-48-33.log]
   [testng] 02:48:33,818 |-INFO in ch.qos.logback.core.sift.SiftProcessor@72c3e033 - End of configuration.
   [testng] [2024-05-04 02:48:33,987] [pool-1-thread-9] Initializing /data/ruben/161009test2/151009_002/experiment_descriptor.xml: 
   [testng] 02:48:33,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
   [testng] 02:48:33,987 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:48:33,988 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-04_02-48-33.log]
   [testng] 02:48:33,988 |-INFO in ch.qos.logback.core.sift.SiftProcessor@6408ed43 - End of configuration.
   [testng] [2024-05-04 02:51:41,353] [pool-1-thread-8] Initializing /data/ruben/20100827_004/experiment_descriptor.xml: 
   [testng] 02:51:41,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
   [testng] 02:51:41,353 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:51:41,355 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-04_02-51-41.log]
   [testng] 02:51:41,355 |-INFO in ch.qos.logback.core.sift.SiftProcessor@4ce6eb86 - End of configuration.
   [testng] [2024-05-04 02:53:55,835] [pool-1-thread-7] Initializing /data/juergen/Experiment/experiment_descriptor.xml: 
   [testng] 02:53:55,835 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
   [testng] 02:53:55,836 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:53:55,837 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-04_02-53-55.log]
   [testng] 02:53:55,838 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2de9afe0 - End of configuration.
   [testng] [2024-05-04 02:53:56,139] [pool-1-thread-6] Initializing /data/jcb/201301120/p2/experiment_descriptor.xml: 
   [testng] 02:53:56,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
   [testng] 02:53:56,139 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:53:56,140 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-04_02-53-56.log]
   [testng] 02:53:56,140 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3ec07414 - End of configuration.
   [testng] [2024-05-04 02:55:53,762] [pool-1-thread-5] Initializing /data/embl/170309_Sec13_GM130m_001/experiment_descriptor.xml: 
   [testng] 02:55:53,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
   [testng] 02:55:53,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:55:53,764 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-04_02-55-53.log]
   [testng] 02:55:53,764 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7a05838c - End of configuration.
   [testng] [2024-05-04 02:57:13,227] [pool-1-thread-4] Initializing /data/embl/Maik_001/experiment_descriptor.xml: 
   [testng] 02:57:13,227 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
   [testng] 02:57:13,228 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:57:13,229 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-04_02-57-13.log]
   [testng] 02:57:13,229 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5b0c17d3 - End of configuration.
   [testng] [2024-05-04 02:57:23,199] [pool-1-thread-3] Initializing /data/ruben/TestPlate_Mock_01_001/experiment_descriptor.xml: 
   [testng] 02:57:23,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
   [testng] 02:57:23,199 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:57:23,200 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-04_02-57-23.log]
   [testng] 02:57:23,200 |-INFO in ch.qos.logback.core.sift.SiftProcessor@18645a88 - End of configuration.
   [testng] [2024-05-04 02:57:41,462] [pool-1-thread-2] Initializing /data/nadine/experiment_descriptor.xml: 
   [testng] 02:57:41,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
   [testng] 02:57:41,463 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
   [testng] 02:57:41,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-04_02-57-41.log]
   [testng] 02:57:41,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2b67197e - End of configuration.
   [testng] [2024-05-04 02:57:44,232] [pool-1-thread-12] Initializing /data/ruben/12-05-25_009/experiment_descriptor.xml: 
   [testng] [2024-05-04 02:58:14,879] [pool-1-thread-2] Initializing /data/ruben/161009test2/151009_001/experiment_descriptor.xml: 
   [testng] [2024-05-04 03:02:09,242] [pool-1-thread-7] Initializing /data/jcb/201301120/p17/experiment_descriptor.xml: 
   [testng] [2024-05-04 03:04:19,622] [pool-1-thread-10] Initializing /data/ruben/scanr_no_labels/Peter/experiment_descriptor.xml: 
   [testng] [2024-05-04 03:05:33,436] [pool-1-thread-4] Initializing /data/ruben/plate_002/experiment_descriptor.xml: 
   [testng] 
   [testng] ===============================================
   [testng] Bio-Formats software test suite
   [testng] Total tests run: 901, Failures: 0, Skips: 0
   [testng] ===============================================
   [testng] 

BUILD SUCCESSFUL
Total time: 46 minutes 50 seconds
Finished: SUCCESS