Started by upstream project "BIOFORMATS-test-repo" build number 59
originally caused by:
Started by upstream project "Trigger" build number 66
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@3
[BIOFORMATS-test-folder@3] $ /bin/bash -xe /tmp/jenkins16643729307581206572.sh
+ '[' bmp = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_8690_merge_ci -v /uod/idr/repos/curated/bmp:/data -v /uod/idr-scratch/merge-ci/curated/bmp:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 01:23:39,878 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 01:23:39,995 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 01:23:40,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 01:23:40,060 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 01:23:40,114 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 01:23:40,114 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 01:23:40,114 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 01:23:40,114 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 01:23:40,115 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 01:23:40,115 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 01:23:40,116 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 830 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-10 01:23:40,128] [main] java.version = 1.8.0_342
[testng] 01:23:40,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 01:23:40,132 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:40,361 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_01-23-40.log]
[testng] 01:23:40,363 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-10 01:23:40,425] [main] testng.directory = /data
[testng] [2024-05-10 01:23:40,426] [main] testng.configDirectory = /config
[testng] [2024-05-10 01:23:40,540] [main] testng.multiplier = 1.0
[testng] [2024-05-10 01:23:40,541] [main] testng.in-memory = false
[testng] [2024-05-10 01:23:40,541] [main] testng.allow-missing = false
[testng] [2024-05-10 01:23:40,541] [main] user.language = en
[testng] [2024-05-10 01:23:40,541] [main] user.country = ${user.country}
[testng] [2024-05-10 01:23:40,541] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-10 01:23:41,465] [main] ----------------------------------------
[testng] [2024-05-10 01:23:41,466] [main] Total files: 31
[testng] [2024-05-10 01:23:41,466] [main] Scan time: 0.924 s (29 ms/file)
[testng] [2024-05-10 01:23:41,466] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 31 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-10 01:23:43,334] [pool-1-thread-1] Initializing /data/bk/ch_00.bmp:
[testng] 01:23:43,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 01:23:43,335 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,336 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_01-23-43.log]
[testng] 01:23:43,336 |-INFO in ch.qos.logback.core.sift.SiftProcessor@77abbc79 - End of configuration.
[testng] [2024-05-10 01:23:43,356] [pool-1-thread-12] Initializing /data/dennis/kidney_TFl_Five.bmp:
[testng] 01:23:43,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 01:23:43,357 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,358 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_01-23-43.log]
[testng] 01:23:43,358 |-INFO in ch.qos.logback.core.sift.SiftProcessor@306bca0a - End of configuration.
[testng] [2024-05-10 01:23:43,366] [pool-1-thread-9] Initializing /data/big-images/6kx6k.bmp:
[testng] 01:23:43,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 01:23:43,366 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,367 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_01-23-43.log]
[testng] 01:23:43,368 |-INFO in ch.qos.logback.core.sift.SiftProcessor@64c088b5 - End of configuration.
[testng] [2024-05-10 01:23:43,377] [pool-1-thread-11] Initializing /data/ticket-12971/foo.bmp:
[testng] 01:23:43,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 01:23:43,378 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,378 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_01-23-43.log]
[testng] 01:23:43,379 |-INFO in ch.qos.logback.core.sift.SiftProcessor@23755da5 - End of configuration.
[testng] [2024-05-10 01:23:43,405] [pool-1-thread-10] Initializing /data/brian/images/raw_a.bmp:
[testng] 01:23:43,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 01:23:43,405 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,406 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_01-23-43.log]
[testng] 01:23:43,407 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1e851908 - End of configuration.
[testng] [2024-05-10 01:23:43,414] [pool-1-thread-7] Initializing /data/brian/images/23srp5dksub.bmp:
[testng] 01:23:43,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 01:23:43,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_01-23-43.log]
[testng] 01:23:43,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37447c4b - End of configuration.
[testng] [2024-05-10 01:23:43,423] [pool-1-thread-8] Initializing /data/brian/images/kidney_TFl_1_greyscale.bmp:
[testng] 01:23:43,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 01:23:43,424 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,424 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_01-23-43.log]
[testng] 01:23:43,425 |-INFO in ch.qos.logback.core.sift.SiftProcessor@20b03cdd - End of configuration.
[testng] [2024-05-10 01:23:43,431] [pool-1-thread-5] Initializing /data/big-images/6kx6k-grey.bmp:
[testng] 01:23:43,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 01:23:43,431 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,432 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_01-23-43.log]
[testng] 01:23:43,432 |-INFO in ch.qos.logback.core.sift.SiftProcessor@37d4b1c5 - End of configuration.
[testng] [2024-05-10 01:23:43,445] [pool-1-thread-6] Initializing /data/curtis/image3.bmp:
[testng] 01:23:43,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 01:23:43,445 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,446 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_01-23-43.log]
[testng] 01:23:43,447 |-INFO in ch.qos.logback.core.sift.SiftProcessor@25dfb2b5 - End of configuration.
[testng] [2024-05-10 01:23:43,461] [pool-1-thread-4] Initializing /data/big-images/8kx8k.bmp:
[testng] 01:23:43,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 01:23:43,462 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,463 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_01-23-43.log]
[testng] 01:23:43,464 |-INFO in ch.qos.logback.core.sift.SiftProcessor@12531d6a - End of configuration.
[testng] [2024-05-10 01:23:43,480] [pool-1-thread-3] Initializing /data/dennis/kidney_TFl_One.bmp:
[testng] 01:23:43,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 01:23:43,481 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,481 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_01-23-43.log]
[testng] 01:23:43,482 |-INFO in ch.qos.logback.core.sift.SiftProcessor@74a0bb90 - End of configuration.
[testng] [2024-05-10 01:23:43,495] [pool-1-thread-2] Initializing /data/curtis/image5.bmp:
[testng] 01:23:43,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 01:23:43,496 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 01:23:43,497 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_01-23-43.log]
[testng] 01:23:43,497 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7f6f909d - End of configuration.
[testng] [2024-05-10 01:23:45,798] [pool-1-thread-12] Initializing /data/curtis/image1.bmp:
[testng] [2024-05-10 01:23:45,802] [pool-1-thread-3] Initializing /data/stephane/holo0908.bmp:
[testng] [2024-05-10 01:23:45,811] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Eight.bmp:
[testng] [2024-05-10 01:23:45,819] [pool-1-thread-8] Initializing /data/dennis/kidney_TFl_Seven.bmp:
[testng] [2024-05-10 01:23:45,827] [pool-1-thread-11] Initializing /data/curtis/image2.bmp:
[testng] [2024-05-10 01:23:45,839] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Six.bmp:
[testng] [2024-05-10 01:23:45,848] [pool-1-thread-2] Initializing /data/big-images/8kx8k-grey.bmp:
[testng] [2024-05-10 01:23:45,860] [pool-1-thread-6] Initializing /data/dennis/kidney_TFl_Three.bmp:
[testng] [2024-05-10 01:23:45,869] [pool-1-thread-1] Initializing /data/frank/cell_mask_error.bmp:
[testng] [2024-05-10 01:23:46,338] [pool-1-thread-11] Initializing /data/brian/images/raw_a_rg.tiff:
[testng] [2024-05-10 01:23:46,368] [pool-1-thread-12] Initializing /data/brian/images/DMSOHigh_001.bmp:
[testng] [2024-05-10 01:23:46,858] [pool-1-thread-1] Initializing /data/dennis/kidney_TFl_Two.bmp:
[testng] [2024-05-10 01:23:46,898] [pool-1-thread-6] Initializing /data/brian/images/raw_a_rg.bmp:
[testng] [2024-05-10 01:23:46,994] [pool-1-thread-10] Initializing /data/dennis/kidney_TFl_Four.bmp:
[testng] [2024-05-10 01:23:46,999] [pool-1-thread-7] Initializing /data/dennis/kidney_TFl_Nine.bmp:
[testng] [2024-05-10 01:23:47,005] [pool-1-thread-8] Initializing /data/curtis/image4.bmp:
[testng] [2024-05-10 01:23:47,127] [pool-1-thread-6] Initializing /data/bk/100427RBTLPC_FD3__A___5_T_001_ch_00_image_00025_Z_001.bmp:
[testng] [2024-05-10 01:23:47,216] [pool-1-thread-8] Initializing /data/qa-4538/22577136_Figure 2_A_ATF6 (GST)_13572.bmp:
[testng] [2024-05-10 01:23:47,237] [pool-1-thread-11] Initializing /data/brian/images/kidney_TFl_1.bmp:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 1643, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 32 seconds
Finished: SUCCESS