Started by upstream project "BIOFORMATS-test-repo" build number 59
originally caused by:
Started by upstream project "Trigger" build number 66
originally caused by:
Started by timer
Running as SYSTEM
Building remotely on docker (swarm) in workspace /home/omero/workspace/BIOFORMATS-test-folder@9
[BIOFORMATS-test-folder@9] $ /bin/bash -xe /tmp/jenkins10336929098672071265.sh
+ '[' mng = slidebook ']'
++ date +%u
+ '[' 5 -le 1 ']'
+ sudo docker run --rm --name BIOFORMATS-test-folder_8773_merge_ci -v /uod/idr/repos/curated/mng:/data -v /uod/idr-scratch/merge-ci/curated/mng:/config snoopycrimecop/bioformats:merge_ci -Dtestng.memory=15g -Dtestng.threadCount=12
Buildfile: /bio-formats-build/bioformats/components/test-suite/build.xml
[echo] isSnapshot = true
init-title:
[echo] ----------=========== bio-formats-testing-framework ===========----------
init-timestamp:
init:
copy-resources:
compile:
[resolver:resolve] Resolving artifacts
compile-tests:
[resolver:resolve] Resolving artifacts
[javac] Compiling 1 source file to /bio-formats-build/bioformats/components/test-suite/test
test-automated:
[testng] File leak detector installed
[testng] 02:16:01,634 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [stdout]
[testng] 02:16:01,734 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.core.ConsoleAppender]
[testng] 02:16:01,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [SIFT]
[testng] 02:16:01,762 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [ch.qos.logback.classic.sift.SiftingAppender]
[testng] 02:16:01,784 |-INFO in ch.qos.logback.classic.model.processor.LoggerModelHandler - Setting level of logger [loci.tests.testng] to DEBUG
[testng] 02:16:01,785 |-INFO in ch.qos.logback.classic.model.processor.RootLoggerModelHandler - Setting level of ROOT logger to INFO
[testng] 02:16:01,785 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [SIFT] to Logger[ROOT]
[testng] 02:16:01,785 |-INFO in ch.qos.logback.core.model.processor.AppenderRefModelHandler - Attaching appender named [stdout] to Logger[loci.tests.testng]
[testng] 02:16:01,785 |-INFO in ch.qos.logback.core.model.processor.DefaultProcessor@5c30a9b0 - End of configuration.
[testng] 02:16:01,786 |-INFO in ch.qos.logback.classic.joran.JoranConfigurator@7a69b07 - Registering current configuration as safe fallback point
[testng] 02:16:01,786 |-INFO in ch.qos.logback.classic.util.ContextInitializer@5e82df6a - ch.qos.logback.classic.util.DefaultJoranConfigurator.configure() call lasted 555 milliseconds. ExecutionStatus=DO_NOT_INVOKE_NEXT_IF_ANY
[testng] [2024-05-10 02:16:01,797] [main] java.version = 1.8.0_342
[testng] 02:16:01,800 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-main]
[testng] 02:16:01,801 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:02,097 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-main] - File property is set to [target/bio-formats-test-main-2024-05-10_02-16-02.log]
[testng] 02:16:02,100 |-INFO in ch.qos.logback.core.sift.SiftProcessor@36fc695d - End of configuration.
[testng] [2024-05-10 02:16:02,124] [main] testng.directory = /data
[testng] [2024-05-10 02:16:02,124] [main] testng.configDirectory = /config
[testng] [2024-05-10 02:16:02,214] [main] testng.multiplier = 1.0
[testng] [2024-05-10 02:16:02,214] [main] testng.in-memory = false
[testng] [2024-05-10 02:16:02,214] [main] testng.allow-missing = false
[testng] [2024-05-10 02:16:02,214] [main] user.language = en
[testng] [2024-05-10 02:16:02,214] [main] user.country = ${user.country}
[testng] [2024-05-10 02:16:02,214] [main] Maximum heap size = 13653 MB
[testng] Scanning for files...
[testng] [2024-05-10 02:16:03,557] [main] ----------------------------------------
[testng] [2024-05-10 02:16:03,557] [main] Total files: 78
[testng] [2024-05-10 02:16:03,557] [main] Scan time: 1.343 s (17 ms/file)
[testng] [2024-05-10 02:16:03,557] [main] ----------------------------------------
[testng] Building list of tests...
[testng] Ready to test 78 files
[testng] [TestNG] Running:
[testng] Bio-Formats software test suite
[testng]
[testng] [2024-05-10 02:16:17,270] [pool-1-thread-1] Initializing /data/images/I01SCRL.mng:
[testng] 02:16:17,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-1]
[testng] 02:16:17,270 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,271 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-1] - File property is set to [target/bio-formats-test-pool-1-thread-1-2024-05-10_02-16-17.log]
[testng] 02:16:17,272 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c980d6 - End of configuration.
[testng] [2024-05-10 02:16:17,326] [pool-1-thread-12] Initializing /data/images/png/Delta-rgbEight.png:
[testng] 02:16:17,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-12]
[testng] 02:16:17,326 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,327 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-12] - File property is set to [target/bio-formats-test-pool-1-thread-12-2024-05-10_02-16-17.log]
[testng] 02:16:17,328 |-INFO in ch.qos.logback.core.sift.SiftProcessor@380e4d67 - End of configuration.
[testng] [2024-05-10 02:16:17,333] [pool-1-thread-11] Initializing /data/images/Delta-gray1.mng:
[testng] 02:16:17,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-11]
[testng] 02:16:17,334 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,334 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-11] - File property is set to [target/bio-formats-test-pool-1-thread-11-2024-05-10_02-16-17.log]
[testng] 02:16:17,335 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3c28800 - End of configuration.
[testng] [2024-05-10 02:16:17,351] [pool-1-thread-10] Initializing /data/images/MNGTERM0.mng:
[testng] 02:16:17,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-10]
[testng] 02:16:17,351 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,352 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-10] - File property is set to [target/bio-formats-test-pool-1-thread-10-2024-05-10_02-16-17.log]
[testng] 02:16:17,352 |-INFO in ch.qos.logback.core.sift.SiftProcessor@66edcb42 - End of configuration.
[testng] [2024-05-10 02:16:17,367] [pool-1-thread-9] Initializing /data/images/PNGBASxx.mng:
[testng] 02:16:17,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-9]
[testng] 02:16:17,368 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,369 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-9] - File property is set to [target/bio-formats-test-pool-1-thread-9-2024-05-10_02-16-17.log]
[testng] 02:16:17,369 |-INFO in ch.qos.logback.core.sift.SiftProcessor@1d67dd55 - End of configuration.
[testng] [2024-05-10 02:16:17,397] [pool-1-thread-8] Initializing /data/images/MNGTERM3-4.mng:
[testng] 02:16:17,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-8]
[testng] 02:16:17,398 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,398 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-8] - File property is set to [target/bio-formats-test-pool-1-thread-8-2024-05-10_02-16-17.log]
[testng] 02:16:17,398 |-INFO in ch.qos.logback.core.sift.SiftProcessor@7c957425 - End of configuration.
[testng] [2024-05-10 02:16:17,414] [pool-1-thread-7] Initializing /data/images/PNGGxxxx.mng:
[testng] 02:16:17,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-7]
[testng] 02:16:17,414 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,414 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-7] - File property is set to [target/bio-formats-test-pool-1-thread-7-2024-05-10_02-16-17.log]
[testng] 02:16:17,415 |-INFO in ch.qos.logback.core.sift.SiftProcessor@5483ff67 - End of configuration.
[testng] [2024-05-10 02:16:17,432] [pool-1-thread-6] Initializing /data/images/PROM-BASN-zfil.mng:
[testng] 02:16:17,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-6]
[testng] 02:16:17,432 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,433 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-6] - File property is set to [target/bio-formats-test-pool-1-thread-6-2024-05-10_02-16-17.log]
[testng] 02:16:17,433 |-INFO in ch.qos.logback.core.sift.SiftProcessor@2df0a5e2 - End of configuration.
[testng] [2024-05-10 02:16:17,453] [pool-1-thread-5] Initializing /data/images/Delta-gray16.mng:
[testng] 02:16:17,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-5]
[testng] 02:16:17,453 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,454 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-5] - File property is set to [target/bio-formats-test-pool-1-thread-5-2024-05-10_02-16-17.log]
[testng] 02:16:17,454 |-INFO in ch.qos.logback.core.sift.SiftProcessor@3fa8319f - End of configuration.
[testng] [2024-05-10 02:16:17,471] [pool-1-thread-4] Initializing /data/images/png/PROM-zfil.png:
[testng] 02:16:17,471 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-4]
[testng] 02:16:17,472 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,472 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-4] - File property is set to [target/bio-formats-test-pool-1-thread-4-2024-05-10_02-16-17.log]
[testng] 02:16:17,472 |-INFO in ch.qos.logback.core.sift.SiftProcessor@41b6cfd8 - End of configuration.
[testng] [2024-05-10 02:16:17,476] [pool-1-thread-3] Initializing /data/images/MNGTERM3-8.mng:
[testng] 02:16:17,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-3]
[testng] 02:16:17,477 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,477 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-3] - File property is set to [target/bio-formats-test-pool-1-thread-3-2024-05-10_02-16-17.log]
[testng] 02:16:17,477 |-INFO in ch.qos.logback.core.sift.SiftProcessor@26feb409 - End of configuration.
[testng] [2024-05-10 02:16:17,490] [pool-1-thread-2] Initializing /data/images/Delta-rgb-a8w.mng:
[testng] 02:16:17,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - Processing appender named [logfile-pool-1-thread-2]
[testng] 02:16:17,491 |-INFO in ch.qos.logback.core.model.processor.AppenderModelHandler - About to instantiate appender of type [loci.tests.testng.TimestampedLogFileAppender]
[testng] 02:16:17,491 |-INFO in loci.tests.testng.TimestampedLogFileAppender[logfile-pool-1-thread-2] - File property is set to [target/bio-formats-test-pool-1-thread-2-2024-05-10_02-16-17.log]
[testng] 02:16:17,491 |-INFO in ch.qos.logback.core.sift.SiftProcessor@69fbe04c - End of configuration.
[testng] [2024-05-10 02:16:19,346] [pool-1-thread-10] Initializing /data/images/Delta-gray-a16w.mng:
[testng] [2024-05-10 02:16:19,368] [pool-1-thread-3] Initializing /data/images/png/Delta-gray-aEightB.png:
[testng] [2024-05-10 02:16:19,371] [pool-1-thread-8] Initializing /data/images/MNGTERM3-1.mng:
[testng] [2024-05-10 02:16:19,381] [pool-1-thread-11] Initializing /data/images/Delta-gray-a8w.mng:
[testng] [2024-05-10 02:16:19,404] [pool-1-thread-5] Initializing /data/images/Delta-rgb-a16b.mng:
[testng] [2024-05-10 02:16:19,426] [pool-1-thread-2] Initializing /data/images/Waves2.mng:
[testng] [2024-05-10 02:16:19,436] [pool-1-thread-6] Initializing /data/images/png/MNGPAST16a.png:
[testng] [2024-05-10 02:16:19,439] [pool-1-thread-12] Initializing /data/images/png/MNGPAST-eightB.png:
[testng] [2024-05-10 02:16:19,443] [pool-1-thread-1] Initializing /data/images/MNGTERM3-2.mng:
[testng] [2024-05-10 02:16:19,459] [pool-1-thread-4] Initializing /data/roger/Well C4_01.mng:
[testng] [2024-05-10 02:16:21,928] [pool-1-thread-7] Initializing /data/images/png/Delta-gray-aEightW.png:
[testng] [2024-05-10 02:16:21,931] [pool-1-thread-9] Initializing /data/images/home.mng:
[testng] [2024-05-10 02:16:22,237] [pool-1-thread-6] Initializing /data/images/scrollOne.mng:
[testng] [2024-05-10 02:16:22,259] [pool-1-thread-7] Initializing /data/roger/Well E6_01.mng:
[testng] [2024-05-10 02:16:24,944] [pool-1-thread-3] Initializing /data/images/PNGCH-CC.mng:
[testng] [2024-05-10 02:16:25,009] [pool-1-thread-12] Initializing /data/images/png/MNGPAST16b.png:
[testng] [2024-05-10 02:16:25,057] [pool-1-thread-9] Initializing /data/images/MNGTERM1.mng:
[testng] [2024-05-10 02:16:25,078] [pool-1-thread-2] Initializing /data/images/scrollTwo.mng:
[testng] [2024-05-10 02:16:25,111] [pool-1-thread-8] Initializing /data/images/png/PROM-repl.png:
[testng] [2024-05-10 02:16:25,115] [pool-1-thread-1] Initializing /data/images/png/MNGPAST-eightA.png:
[testng] [2024-05-10 02:16:25,177] [pool-1-thread-10] Initializing /data/images/Delta-gray-a8b.mng:
[testng] [2024-05-10 02:16:25,255] [pool-1-thread-11] Initializing /data/images/PROM-BASI-zfil.mng:
[testng] [2024-05-10 02:16:25,278] [pool-1-thread-5] Initializing /data/images/png/Delta-gray-a16w.png:
[testng] [2024-05-10 02:16:25,327] [pool-1-thread-6] Initializing /data/images/png/Delta-grayFour.png:
[testng] [2024-05-10 02:16:25,333] [pool-1-thread-12] Initializing /data/images/MNGTERM3-3.mng:
[testng] [2024-05-10 02:16:25,355] [pool-1-thread-1] Initializing /data/images/Delta-gray8.mng:
[testng] [2024-05-10 02:16:25,383] [pool-1-thread-3] Initializing /data/roger/Well B3_01.mng:
[testng] [2024-05-10 02:16:27,950] [pool-1-thread-8] Initializing /data/images/png/Delta-rgb-a16b.png:
[testng] [2024-05-10 02:16:27,967] [pool-1-thread-5] Initializing /data/images/PNGFxxxx.mng:
[testng] [2024-05-10 02:16:27,996] [pool-1-thread-6] Initializing /data/images/Waves1.mng:
[testng] [2024-05-10 02:16:28,011] [pool-1-thread-9] Initializing /data/images/png/Delta-grayTwo.png:
[testng] [2024-05-10 02:16:28,083] [pool-1-thread-8] Initializing /data/images/Delta-rgbEight.mng:
[testng] [2024-05-10 02:16:28,094] [pool-1-thread-12] Initializing /data/images/MNGPAST_eightA.mng:
[testng] [2024-05-10 02:16:28,136] [pool-1-thread-1] Initializing /data/images/Waves3.mng:
[testng] [2024-05-10 02:16:28,145] [pool-1-thread-9] Initializing /data/images/MNGTERM3-6.mng:
[testng] [2024-05-10 02:16:28,173] [pool-1-thread-11] Initializing /data/images/PROM-BASI-repl.mng:
[testng] [2024-05-10 02:16:28,190] [pool-1-thread-6] Initializing /data/images/png/Delta-grayEight.png:
[testng] [2024-05-10 02:16:28,209] [pool-1-thread-10] Initializing /data/images/Delta-gray4.mng:
[testng] [2024-05-10 02:16:28,295] [pool-1-thread-12] Initializing /data/images/MNGTERM3-0.mng:
[testng] [2024-05-10 02:16:28,328] [pool-1-thread-5] Initializing /data/images/buttonTwo.mng:
[testng] [2024-05-10 02:16:28,340] [pool-1-thread-6] Initializing /data/images/MNGPAST16b.mng:
[testng] [2024-05-10 02:16:28,351] [pool-1-thread-8] Initializing /data/images/png/Delta-rgb-aEightB.png:
[testng] [2024-05-10 02:16:28,377] [pool-1-thread-1] Initializing /data/images/png/Delta-grayOne.png:
[testng] [2024-05-10 02:16:28,391] [pool-1-thread-9] Initializing /data/images/png/Delta-rgb-aEightW.png:
[testng] [2024-05-10 02:16:28,495] [pool-1-thread-2] Initializing /data/images/Delta-gray-a16b.mng:
[testng] [2024-05-10 02:16:28,566] [pool-1-thread-1] Initializing /data/images/MNGPAST_eightB.mng:
[testng] [2024-05-10 02:16:28,575] [pool-1-thread-8] Initializing /data/images/png/Delta-rgb-a16w.png:
[testng] [2024-05-10 02:16:28,578] [pool-1-thread-10] Initializing /data/images/Delta-gray2.mng:
[testng] [2024-05-10 02:16:28,613] [pool-1-thread-11] Initializing /data/images/PNGSxxxx.mng:
[testng] [2024-05-10 02:16:28,658] [pool-1-thread-9] Initializing /data/images/PROM-BASN-repl.mng:
[testng] [2024-05-10 02:16:28,676] [pool-1-thread-12] Initializing /data/images/Delta-rgb-a16w.mng:
[testng] [2024-05-10 02:16:28,705] [pool-1-thread-6] Initializing /data/images/png/Delta-gray-a16b.png:
[testng] [2024-05-10 02:16:28,731] [pool-1-thread-5] Initializing /data/images/png/Delta-rgb16.png:
[testng] [2024-05-10 02:16:28,812] [pool-1-thread-8] Initializing /data/images/MNGPAST16a.mng:
[testng] [2024-05-10 02:16:28,848] [pool-1-thread-6] Initializing /data/images/PNGCMSPx.mng:
[testng] [2024-05-10 02:16:28,864] [pool-1-thread-1] Initializing /data/images/MNGTERM3-5.mng:
[testng] [2024-05-10 02:16:28,890] [pool-1-thread-5] Initializing /data/images/scrollThree.mng:
[testng] [2024-05-10 02:16:28,984] [pool-1-thread-2] Initializing /data/images/australia1.mng:
[testng] [2024-05-10 02:16:29,053] [pool-1-thread-8] Initializing /data/images/buttonOne.mng:
[testng] [2024-05-10 02:16:29,062] [pool-1-thread-10] Initializing /data/images/MNGTERM3-7.mng:
[testng] [2024-05-10 02:16:29,122] [pool-1-thread-9] Initializing /data/images/DUTCH-two.mng:
[testng] [2024-05-10 02:16:29,146] [pool-1-thread-12] Initializing /data/images/Delta-rgb16.mng:
[testng] [2024-05-10 02:16:29,194] [pool-1-thread-1] Initializing /data/images/MNGTERM2.mng:
[testng] [2024-05-10 02:16:29,263] [pool-1-thread-5] Initializing /data/images/Delta-rgb-a8b.mng:
[testng] [2024-05-10 02:16:29,305] [pool-1-thread-8] Initializing /data/roger/Well D2_01.mng:
[testng] [2024-05-10 02:16:32,431] [pool-1-thread-6] Initializing /data/images/png/Delta-graySixteen.png:
[testng]
[testng] ===============================================
[testng] Bio-Formats software test suite
[testng] Total tests run: 4134, Failures: 0, Skips: 0
[testng] ===============================================
[testng]
BUILD SUCCESSFUL
Total time: 56 seconds
Finished: SUCCESS